Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

27708324 .. 27710683

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAAACATTTTTGCAATATGCCAGCCCATCTTGCATGGAGTAATGAAGCTAGCAGGGGTGAGACCCCAAACCCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTTCTGAAACCAACTCGAAAAAGTCGAAGCCCGCCGTGGTCTTTCTTCACGGATTTGCAGTGGACGGCATCATAACATGGCAATTTCAAGTCCTATCTCTCGCCAGAGACTACGCCATTTACGTACCCGATCTTATCTTCTTCGGCGGATCCATCACGGATAAACCCGACCGGTCGCCGGAGTTCCAAGCCGAGTGTGTGGCGAAGGGTTTGAGGAAGCTTGGGGTGAAGAGGTGCACCCTTGTGGGGTTGAGCTACGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTATACCCTGATATGGTTGAGGCCGTTGTCGTGACTTGCTCCGTTATGGCTTTGACCAAGTCCGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCCGACTCGGTCAAAGGAGTCAGAGACATTTTTGAAATTGCTGCCTACGAGTTTCCTCACCTTCCTGATTGGATCTACAGACAATACTTGGAAGTAATGTTTGACAACCGCAAGGAGAGGGAAGAACTTCTTGAGGCTTTGGTCATCCGTGACGAAGATTTCGCCGTGCCTAACTTTCCACAGAGGGTGTATCTTTTGTGGGGAGCGAATGACAAGATCTTCGACATAGACACTGCAAGCGACCTCAACAGGCAATTAGGCAACAACGCATCAGTGGATCTTATAGAAAAGGCAGGTCACCTTGTTCAAATGGAGCGACCATTCATGTATAACAGGCAGCTCAGGAAATTTTTGGCGTCTTTATCAGAAGATATGCACCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

303

Amino Acids

34.17

Weight (kDa)

5.37

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	49 - 281	4.9e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	51 - 281	2e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	806
AciI	CCGC	4 cut(s)	147, 261, 398, 631
AclWI	GGATC	4 cut(s)	258, 271, 602, 807
AcsI	RAATTY	1 cut(s)	869
AcyI	GRCGYC	2 cut(s)	474, 878
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	203, 557, 830
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	52, 334, 369, 403, 862
AluI	AGCT	5 cut(s)	52, 334, 369, 403, 862
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	58, 216, 540
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	4 cut(s)	258, 271, 602, 807
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	423
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	563, 859
ApoI	RAATTY	1 cut(s)	869
ArsI	GACNNNNNNTTYG	4 cut(s)	665, 697, 725, 757
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	648
AsuHPI	GGTGA	4 cut(s)	73, 352, 572, 812
AsuNHI	GCTAGC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	550, 871
BccI	CCATC	3 cut(s)	38, 275, 388
BceAI	ACGGC	4 cut(s)	134, 196, 410, 671
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	58, 216, 540
BfaI	CTAG	3 cut(s)	53, 77, 907
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	806
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	2 cut(s)	564, 860
BlsI	GCNGC	2 cut(s)	565, 861
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	114, 265
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	192, 800
BmtI	GCTAGC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	863
BpuEI	CTTGAG	1 cut(s)	674
BsaAI	YACGTR	1 cut(s)	238
BsaHI	GRCGYC	2 cut(s)	474, 878
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
Bse118I	RCCGGY	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BseMII	CTCAG	1 cut(s)	877
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	550, 871
Bsh1285I	CGRYCG	2 cut(s)	286, 290
BshFI	GGCC	1 cut(s)	425
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	2 cut(s)	286, 290
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	286, 293, 477
BslI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BsmAI	GTCTC	3 cut(s)	58, 216, 540
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
BspACI	CCGC	4 cut(s)	147, 261, 398, 631
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	876
BspLI	GGNNCC	2 cut(s)	114, 265
BspMI	ACCTGC	1 cut(s)	806
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	4 cut(s)	258, 271, 602, 807
BspTNI	GGTCTC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
BssNI	GRCGYC	2 cut(s)	474, 878
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	97, 504
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	2 cut(s)	474, 878
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	26, 54, 147, 760
BstDEI	CTNAG	1 cut(s)	863
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	666
BstKTI	GATC	6 cut(s)	84, 247, 266, 597, 741, 802
BstMAI	GTCTC	3 cut(s)	58, 216, 540
BstMBI	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
BstMCI	CGRYCG	2 cut(s)	286, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 375
BstNI	CCWGG	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	353
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	550, 871
BstX2I	RGATCY	4 cut(s)	263, 594, 738, 799
BstYI	RGATCY	4 cut(s)	263, 594, 738, 799
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	666
BtsI	GCAGTG	2 cut(s)	180, 753
BtsIMutI	CAGTG	3 cut(s)	180, 753, 801
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	4 cut(s)	26, 54, 147, 760
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	285
CseI	GACGC	2 cut(s)	482, 867
Csp6I	GTAC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	4 cut(s)	38, 192, 379, 847
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	863
DpnI	GATC	6 cut(s)	83, 246, 265, 596, 740, 801
DpnII	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	2 cut(s)	276, 413
Eco105I	TACGTA	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	818
EcoO65I	GGTNACC	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	4 cut(s)	41, 195, 382, 850
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FatI	CATG	4 cut(s)	37, 191, 378, 846
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	564, 860
FokI	GGATG	1 cut(s)	653
Fsp4HI	GCNGC	2 cut(s)	564, 860
FspBI	CTAG	3 cut(s)	53, 77, 907
GluI	GCNGC	2 cut(s)	564, 860
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	3 cut(s)	286, 293, 477
HgaI	GACGC	2 cut(s)	482, 867
Hin1I	GRCGYC	2 cut(s)	474, 878
Hin1II	CATG	4 cut(s)	41, 195, 382, 850
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	527, 540
HpaII	CCGG	3 cut(s)	286, 293, 477
HphI	GGTGA	4 cut(s)	73, 352, 572, 812
Hpy166II	GTNNAC	2 cut(s)	178, 351
Hpy188I	TCNGA	4 cut(s)	121, 511, 545, 889
Hpy188III	TCNNGA	5 cut(s)	433, 524, 587, 653, 865
Hpy8I	GTNNAC	2 cut(s)	178, 351
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	126, 313, 593
HpyCH4III	ACNGT	2 cut(s)	97, 504
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	17, 37, 173, 351, 758, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 375
HpyF3I	CTNAG	1 cut(s)	863
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	2 cut(s)	474, 878
Hsp92II	CATG	4 cut(s)	41, 195, 382, 850
Kzo9I	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
LmnI	GCTCC	4 cut(s)	400, 446, 725, 835
Lsp1109I	GCAGC	2 cut(s)	550, 871
LweI	GCATC	2 cut(s)	192, 800
MaeI	CTAG	3 cut(s)	53, 77, 907
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	433, 671, 818
MalI	GATC	6 cut(s)	83, 246, 265, 596, 740, 801
MboI	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
MboII	GAAGA	8 cut(s)	152, 244, 247, 355, 656, 689, 733, 902
MflI	RGATCY	4 cut(s)	263, 594, 738, 799
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	4 cut(s)	197, 558, 776, 869
MlyI	GAGTC	2 cut(s)	521, 549
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	3 cut(s)	286, 293, 477
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	34, 375
NdeII	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	41, 195, 382, 850
NlaIV	GGNNCC	2 cut(s)	114, 265
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	3 cut(s)	433, 671, 818
OliI	CACNNNNGTG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 234
PdmI	GAANNNNTTC	1 cut(s)	648
PflFI	GACNNNGTC	2 cut(s)	460, 530
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	565, 861
PleI	GAGTC	2 cut(s)	521, 548
PpsI	GAGTC	2 cut(s)	521, 548
Ppu21I	YACGTR	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	88
PspEI	GGTNACC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	114, 265
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	4 cut(s)	263, 594, 738, 799
PsyI	GACNNNGTC	2 cut(s)	460, 530
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	564, 860
Sau3AI	GATC	6 cut(s)	81, 244, 263, 594, 738, 799
SchI	GAGTC	2 cut(s)	521, 549
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	192, 800
SfcI	CTRYAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	4 cut(s)	197, 558, 776, 869
SsiI	CCGC	4 cut(s)	147, 261, 398, 631
SspMI	CTAG	3 cut(s)	53, 77, 907
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	97, 504
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	84, 131, 140, 744
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	4 cut(s)	197, 558, 776, 869
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	3 cut(s)	180, 760, 801
TseFI	GTSAC	3 cut(s)	433, 671, 818
TseI	GCWGC	2 cut(s)	563, 859
Tsp45I	GTSAC	3 cut(s)	433, 671, 818
TspDTI	ATGAA	3 cut(s)	62, 116, 835
TspGWI	ACGGA	6 cut(s)	180, 287, 387, 433, 454, 659
TspRI	CASTG	3 cut(s)	180, 760, 801
Tth111I	GACNNNGTC	2 cut(s)	460, 530
VneI	GTGCAC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	3 cut(s)	53, 77, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.