Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Reverse (-)

51931441 .. 51937679

Gene Structure 6239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGAAACATTTTTGCAATATACAAGCCCATCTTGCATGGACTAATGAAGCTGGCCGGGGTGAGACCCCAAACCCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCAGTGGACGGCATCATTACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCGACCGGTCGCCGGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGAGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCCGGACTTGGGAGAATTGGGTTCTCACGGTGGTCGGATTACTTGCTTGCTGACTCGGTCAAAGGAGTGAGAAACATTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGATTGGGTATACAGACACTATTTGGAAGTAATGTTTGACAACCGAAGGGAGAGGAAGAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

8.9

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	49 - 175	2.6e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	51 - 174	1.3e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	2 cut(s)	258, 271
AcoI	YGGCCR	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	240, 407
AfiI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	302, 457, 557
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	4 cut(s)	52, 334, 369, 403
AluI	AGCT	4 cut(s)	52, 334, 369, 403
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	258, 271
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	54, 423
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	563
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	38, 388
BceAI	ACGGC	3 cut(s)	134, 196, 215
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	77, 652
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	2 cut(s)	58, 90
BmiI	GGNNCC	2 cut(s)	114, 265
BmrFI	CCNGG	2 cut(s)	58, 90
BmsI	GCATC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	57, 150, 318
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
Bse118I	RCCGGY	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	57, 150, 318
BseLI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	550
Bsh1285I	CGRYCG	2 cut(s)	286, 290
BshFI	GGCC	2 cut(s)	56, 425
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	2 cut(s)	286, 290
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	4 cut(s)	57, 286, 293, 477
BslI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	56, 425
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	81, 244, 263
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	2 cut(s)	56, 425
BspLI	GGNNCC	2 cut(s)	114, 265
BspPI	GGATC	2 cut(s)	258, 271
BspTNI	GGTCTC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	57, 150, 318
BssMI	GATC	3 cut(s)	81, 244, 263
BssNAI	GTATAC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	97, 167, 504
BstACI	GRCGYC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	54, 147, 522
BstDSI	CCRYGG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	84, 247, 266
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	3 cut(s)	81, 244, 263
BstMCI	CGRYCG	2 cut(s)	286, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 375
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	56, 88
BstSLI	GKGCMC	1 cut(s)	353
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	56, 425
BtgI	CCRYGG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	3 cut(s)	54, 147, 522
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	285
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	239, 406
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	3 cut(s)	38, 192, 379
CviQI	GTAC	2 cut(s)	239, 406
DpnI	GATC	3 cut(s)	83, 246, 265
DpnII	GATC	3 cut(s)	81, 244, 263
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	413
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	41, 195, 382
FaiI	YATR	7 cut(s)	22, 39, 193, 372, 380, 449, 598
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	3 cut(s)	37, 191, 378
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	77, 652
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	56, 425
HapII	CCGG	4 cut(s)	57, 286, 293, 477
HgaI	GACGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	41, 195, 382
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	527
HpaII	CCGG	4 cut(s)	57, 286, 293, 477
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	4 cut(s)	178, 235, 351, 598
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	4 cut(s)	178, 235, 351, 598
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	3 cut(s)	97, 167, 504
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	17, 37, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 375
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	41, 195, 382
Kzo9I	GATC	3 cut(s)	81, 244, 263
LmnI	GCTCC	2 cut(s)	400, 446
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	77, 652
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	83, 246, 265
MboI	GATC	3 cut(s)	81, 244, 263
MboII	GAAGA	5 cut(s)	145, 152, 244, 247, 575
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	3 cut(s)	197, 489, 558
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	321, 339, 368, 415, 588, 633
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	4 cut(s)	57, 286, 293, 477
MspR9I	CCNGG	2 cut(s)	58, 90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	34, 375
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	81, 244, 263
NlaIII	CATG	3 cut(s)	41, 195, 382
NlaIV	GGNNCC	2 cut(s)	114, 265
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 234
PdmI	GAANNNNTTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	530
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Ppu21I	YACGTR	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	114, 265
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	530
RsaI	GTAC	2 cut(s)	240, 407
RsaNI	GTAC	2 cut(s)	239, 406
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	3 cut(s)	81, 244, 263
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	2 cut(s)	58, 90
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	6 cut(s)	54, 240, 336, 350, 371, 405
SfaNI	GCATC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	356
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	3 cut(s)	197, 489, 558
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	77, 652
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	56, 88
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	97, 167, 504
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	84, 131, 140
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	3 cut(s)	197, 489, 558
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	62, 116
TspGWI	ACGGA	3 cut(s)	287, 433, 454
TspRI	CASTG	1 cut(s)	180
Tth111I	GACNNNGTC	1 cut(s)	530
VneI	GTGCAC	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	77, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.