Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

20436486 .. 20446421

Gene Structure 9936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGAAACATTTTTGCTATATACAAGCCCATCTTGCATGGACTAATGAAGCTGGCCGGGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCAGTGGACGGCATCATAACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTATACGTACCCGATCTCATCTTCTTCGGTGAATCCATTACGGATAAGCCCGACCGGTCGCCTGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGAGGCCTTTGTTGTGACTTCCACCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGCAATGTTTGACAACCAAAGGGAGAGGGAAGAACTTCTAAAGGCTTTGGTTATCAGTGACGAGGATTTCACTGTGGCTAATTATCCACAGAGGGTGTATCTTTTGTGGGGAGCGAATGACAAGATCTTCGACATAGAATCTGGAAGCAACCTCAACAAGCAATTAGGCAACAACGCATCAGTCTATCATATAGAGAAAGCAGGTCACCTTGTTCAAATGGAGCGACCATTCGTTTATAACAGCCAGCTCAAGAAAATTTTGGCTTCTGTGTCCGAAGATGTGCACCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

252

Amino Acids

28.13

Weight (kDa)

5.98

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	24 - 126	4.8e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	26 - 231	2.4e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
Acc36I	ACCTGC	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	720
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	165, 332
AfiI	CCNNNNNNNGG	3 cut(s)	285, 340, 408
AgeI	ACCGGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	227, 382, 680
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	5 cut(s)	52, 259, 294, 328, 712
AluI	AGCT	5 cut(s)	52, 259, 294, 328, 712
Alw21I	GWGCWC	2 cut(s)	278, 750
Alw44I	GTGCAC	2 cut(s)	274, 746
AoxI	GGCC	2 cut(s)	54, 348
ApaLI	GTGCAC	2 cut(s)	274, 746
ApoI	RAATTY	1 cut(s)	720
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AsiGI	ACCGGT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	498
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	197, 662
BaeGI	GKGCMC	2 cut(s)	278, 750
Bbv12I	GWGCWC	2 cut(s)	278, 750
BccI	CCATC	2 cut(s)	38, 313
BceAI	ACGGC	3 cut(s)	59, 121, 140
BcnI	CCSGG	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	656
BglII	AGATCT	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	2 cut(s)	117, 650
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	75, 243
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 340, 408
Bse118I	RCCGGY	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	75, 243
BseLI	CCNNNNNNNGG	3 cut(s)	285, 340, 408
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	210
BseSI	GKGCMC	2 cut(s)	278, 750
Bsh1285I	CGRYCG	2 cut(s)	211, 215
BshFI	GGCC	2 cut(s)	56, 350
BshTI	ACCGGT	1 cut(s)	210
BsiEI	CGRYCG	2 cut(s)	211, 215
BsiHKAI	GWGCWC	2 cut(s)	278, 750
BsiSI	CCGG	3 cut(s)	57, 211, 402
BslI	CCNNNNNNNGG	3 cut(s)	285, 340, 408
BsnI	GGCC	2 cut(s)	56, 350
Bsp1286I	GDGCHC	2 cut(s)	278, 750
Bsp143I	GATC	2 cut(s)	169, 588
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	56, 350
BspCNI	CTCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	75, 243
BssMI	GATC	2 cut(s)	169, 588
BssNAI	GTATAC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	243
Bst1107I	GTATAC	1 cut(s)	160
Bst4CI	ACNGT	4 cut(s)	92, 370, 429, 538
BstACI	GRCGYC	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	54, 72, 710
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	668
BstKTI	GATC	2 cut(s)	172, 591
BstMBI	GATC	2 cut(s)	169, 588
BstMCI	CGRYCG	2 cut(s)	211, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 300
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	56
BstSLI	GKGCMC	2 cut(s)	278, 750
BstSNI	TACGTA	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	588
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	588
BstZ17I	GTATAC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	56, 350
BtgI	CCRYGG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 526, 534
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	3 cut(s)	54, 72, 710
Cfr10I	RCCGGY	1 cut(s)	210
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	164, 331
CspAI	ACCGGT	1 cut(s)	210
CviAII	CATG	3 cut(s)	38, 117, 304
CviQI	GTAC	2 cut(s)	164, 331
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	171, 590
DpnII	GATC	2 cut(s)	169, 588
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	338
Eco105I	TACGTA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	668
EcoO65I	GGTNACC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	41, 120, 307
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	3 cut(s)	37, 116, 303
FblI	GTMKAC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	56, 350
HapII	CCGG	3 cut(s)	57, 211, 402
HgaI	GACGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	41, 120, 307
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	3 cut(s)	188, 452, 602
HpaII	CCGG	3 cut(s)	57, 211, 402
HphI	GGTGA	2 cut(s)	197, 662
Hpy166II	GTNNAC	4 cut(s)	103, 160, 276, 748
Hpy188I	TCNGA	2 cut(s)	436, 739
Hpy188III	TCNNGA	3 cut(s)	449, 606, 715
Hpy8I	GTNNAC	4 cut(s)	103, 160, 276, 748
Hpy99I	CGWCG	1 cut(s)	401
HpyCH4III	ACNGT	4 cut(s)	92, 370, 429, 538
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	37, 276, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 300
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	41, 120, 307
Kzo9I	GATC	2 cut(s)	169, 588
LmnI	GCTCC	4 cut(s)	325, 464, 575, 685
LweI	GCATC	2 cut(s)	117, 650
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	358, 521, 668
MalI	GATC	2 cut(s)	171, 590
MboI	GATC	2 cut(s)	169, 588
MboII	GAAGA	6 cut(s)	77, 169, 172, 506, 583, 752
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	2 cut(s)	278, 750
MluCI	AATT	4 cut(s)	122, 544, 626, 720
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	9 cut(s)	246, 264, 293, 340, 405, 483, 520, 549, 626
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	281, 371
MspI	CCGG	3 cut(s)	57, 211, 402
MspR9I	CCNGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	34, 300
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	169, 588
NlaIII	CATG	3 cut(s)	41, 120, 307
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	3 cut(s)	358, 521, 668
OliI	CACNNNNGTG	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	188, 602
PflFI	GACNNNGTC	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	210
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Ppu21I	YACGTR	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	702
PspEI	GGTNACC	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	588
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	2 cut(s)	165, 332
RsaNI	GTAC	2 cut(s)	164, 331
RseI	CAYNNNNRTG	2 cut(s)	281, 371
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	169, 588
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	2 cut(s)	278, 750
SfaNI	GCATC	2 cut(s)	117, 650
SmiMI	CAYNNNNRTG	2 cut(s)	281, 371
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SnaBI	TACGTA	1 cut(s)	163
Sse9I	AATT	4 cut(s)	122, 544, 626, 720
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	92, 370, 429, 538
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	65, 594
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	4 cut(s)	122, 544, 626, 720
TfiI	GAWTC	2 cut(s)	188, 602
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	105, 526, 541
TseFI	GTSAC	3 cut(s)	358, 521, 668
Tsp45I	GTSAC	3 cut(s)	358, 521, 668
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	2 cut(s)	212, 379
TspRI	CASTG	3 cut(s)	105, 526, 541
Tth111I	GACNNNGTC	1 cut(s)	455
VneI	GTGCAC	2 cut(s)	274, 746
XapI	RAATTY	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.