Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Reverse (-)

12800430 .. 12803388

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G095900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTGAACTTTTTTTCAGTATACAAGTTTATTCTACATGGAATTATGAAACTAGTTGGGGTGAGACCCCAAACTGTCGAAATAGAGCCAGGAACGATCATGAACTTCTGGGTCTCTAGTAATATCCCCAACAAAATTGCAAACACACCAAAGAAATCGAAGCCAGCCGTGGTGTTCCTTCATGGCTTTACAATGGATGGTATTTTCACATGGCAACTTCAAGTGCTATCTTTGGCCAAAAACTACACCGTTTATGTCCCGGACTTTCTCTTCTTCGGGGGATCCATCACAGATAAATCGGATAGGTCACCGGAGTTTCAAGCCGAGTGTGTTGCCAAGGGTTTGAGGAGCATGGGGGTAGAGAGGTGCACCTTGGTGGGGTTTAGCTATGGTGGGATGGTTGGGTTCAAAATGGCTGAGTTGTACCCCAATTTGGTGGAGTCCATTGTGGTGACTGGTTCAGTTTTGGCTTTGACCAGATCCATCAGTGATGCTTCTCTTGAAAGACTTGGGTTCAAATGCTGGCCCGATTACTTGCTTCCTAACTCAGTCAAAGATGTGAGAAACATGTTAGAAATTGCTACCTACAAATTTCCATATCTCCCTGATTGGATTTACAAAGATTGTTTCGAGGTTATGTTTGGCAACAGAAAGGAGAGAGAAGAACTTCTAGGGGCATTGGTAGTTGATGACAAGGTCTCGACCATTGCTGATTTTCCACAGAGAGTGCATCTTTTGTGGGGAGAGAATGACAAAATTTTCAACATGGAAACAGCCAGGAACCTAAGAATATATTTACAGGCAATTGGGAGGCAGCGCAAAACTGCAGTCTATAGAGGAGGCAGGCCACCTTTTGCATATAGAAAAACCCTTCGTTTTCAACAAGCAGCTCAAGGAAATTCTTGCTTCTTTTTCGGAAGATGTGCACCAAGACTGAAGAGACCATTTATGTTTTTGCTTTTTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

324

Amino Acids

36.96

Weight (kDa)

9.53

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AclWI	GGATC	3 cut(s)	276, 289, 474
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	3 cut(s)	590, 756, 898
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	378, 433
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	7 cut(s)	221, 320, 409, 503, 517, 763, 881
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	88, 776
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	2 cut(s)	387, 890
AluI	AGCT	2 cut(s)	387, 890
Alw21I	GWGCWC	2 cut(s)	371, 928
Alw26I	GTCTC	4 cut(s)	58, 118, 703, 934
Alw44I	GTGCAC	2 cut(s)	367, 924
AlwI	GGATC	3 cut(s)	276, 289, 474
AoxI	GGCC	3 cut(s)	234, 524, 845
ApaLI	GTGCAC	2 cut(s)	367, 924
ApeKI	GCWGC	2 cut(s)	814, 887
ApoI	RAATTY	3 cut(s)	590, 756, 898
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	4 cut(s)	16, 73, 300, 463
BaeGI	GKGCMC	2 cut(s)	371, 928
BalI	TGGCCA	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	371, 928
BbvI	GCAGC	2 cut(s)	826, 899
BccI	CCATC	4 cut(s)	191, 293, 391, 491
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	2 cut(s)	90, 778
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	58, 118, 703, 934
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 117, 671
BfmI	CTRYAG	2 cut(s)	825, 832
BisI	GCNGC	2 cut(s)	815, 888
BlsI	GCNGC	2 cut(s)	816, 889
Bme1390I	CCNGG	3 cut(s)	90, 260, 778
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	283, 782
BmrFI	CCNGG	3 cut(s)	90, 260, 778
BmsI	GCATC	2 cut(s)	481, 739
BpuEI	CTTGAG	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	260
BsaI	GGTCTC	4 cut(s)	58, 118, 703, 934
BsaJI	CCNNGG	3 cut(s)	168, 336, 372
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 433
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	90, 778
BseDI	CCNNGG	3 cut(s)	168, 336, 372
BseGI	GGATG	2 cut(s)	202, 402
BseLI	CCNNNNNNNGG	2 cut(s)	378, 433
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	408, 561
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	361, 852
BseSI	GKGCMC	2 cut(s)	371, 928
BseXI	GCAGC	2 cut(s)	826, 899
BshFI	GGCC	3 cut(s)	236, 526, 847
BsiHKAI	GWGCWC	2 cut(s)	371, 928
BsiSI	CCGG	2 cut(s)	260, 311
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	378, 433
BsmAI	GTCTC	4 cut(s)	58, 118, 703, 934
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	236, 526, 847
Bso31I	GGTCTC	4 cut(s)	58, 118, 703, 934
Bsp1286I	GDGCHC	2 cut(s)	371, 928
Bsp143I	GATC	3 cut(s)	96, 281, 479
BspANI	GGCC	3 cut(s)	236, 526, 847
BspCNI	CTCAG	2 cut(s)	409, 560
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	283, 782
BspMAI	CTGCAG	1 cut(s)	829
BspPI	GGATC	3 cut(s)	276, 289, 474
BspTNI	GGTCTC	4 cut(s)	58, 118, 703, 934
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	168, 336, 372
BssMI	GATC	3 cut(s)	96, 281, 479
BssNAI	GTATAC	1 cut(s)	22
BssT1I	CCWWGG	2 cut(s)	336, 372
Bst1107I	GTATAC	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	90, 778
Bst4CI	ACNGT	2 cut(s)	76, 250
Bst6I	CTCTTC	2 cut(s)	275, 932
BstC8I	GCNNGC	3 cut(s)	165, 524, 845
BstDEI	CTNAG	3 cut(s)	417, 547, 785
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	202, 402
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	3 cut(s)	99, 284, 482
BstMAI	GTCTC	4 cut(s)	58, 118, 703, 934
BstMBI	GATC	3 cut(s)	96, 281, 479
BstNI	CCWGG	2 cut(s)	90, 778
BstNSI	RCATGY	1 cut(s)	571
BstPI	GGTNACC	1 cut(s)	306
BstSCI	CCNGG	3 cut(s)	88, 258, 776
BstSFI	CTRYAG	2 cut(s)	825, 832
BstSLI	GKGCMC	2 cut(s)	371, 928
BstV1I	GCAGC	2 cut(s)	826, 899
BstX2I	RGATCY	2 cut(s)	281, 479
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	2 cut(s)	281, 479
BstZ17I	GTATAC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	236, 526, 847
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	202, 402
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	3 cut(s)	165, 524, 845
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	819
Cfr13I	GGNCC	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	7 cut(s)	38, 100, 182, 210, 352, 568, 766
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	417, 547, 785
DpnI	GATC	3 cut(s)	98, 283, 481
DpnII	GATC	3 cut(s)	96, 281, 479
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	275, 932
EarI	CTCTTC	2 cut(s)	275, 932
Eco130I	CCWWGG	2 cut(s)	336, 372
Eco31I	GGTCTC	4 cut(s)	58, 118, 703, 934
Eco57I	CTGAAG	1 cut(s)	956
Eco91I	GGTNACC	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	88, 776
EcoT14I	CCWWGG	2 cut(s)	336, 372
ErhI	CCWWGG	2 cut(s)	336, 372
FaeI	CATG	7 cut(s)	41, 103, 185, 213, 355, 571, 769
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	7 cut(s)	37, 99, 181, 209, 351, 567, 765
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	815, 888
FokI	GGATG	2 cut(s)	209, 409
Fsp4HI	GCNGC	2 cut(s)	815, 888
FspBI	CTAG	3 cut(s)	53, 117, 671
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	2 cut(s)	815, 888
HaeIII	GGCC	3 cut(s)	236, 526, 847
HapII	CCGG	2 cut(s)	260, 311
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	7 cut(s)	41, 103, 185, 213, 355, 571, 769
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	2 cut(s)	260, 311
HphI	GGTGA	4 cut(s)	16, 73, 300, 463
Hpy166II	GTNNAC	4 cut(s)	7, 22, 369, 926
Hpy188I	TCNGA	2 cut(s)	301, 917
Hpy188III	TCNNGA	3 cut(s)	100, 500, 700
Hpy8I	GTNNAC	4 cut(s)	7, 22, 369, 926
HpyAV	CCTTC	2 cut(s)	188, 881
HpyCH4III	ACNGT	2 cut(s)	76, 250
HpyCH4V	TGCA	6 cut(s)	140, 369, 730, 827, 857, 926
HpyF3I	CTNAG	3 cut(s)	417, 547, 785
Hsp92II	CATG	7 cut(s)	41, 103, 185, 213, 355, 571, 769
HspAI	GCGC	1 cut(s)	817
Kzo9I	GATC	3 cut(s)	96, 281, 479
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	826, 899
LweI	GCATC	2 cut(s)	481, 739
MaeI	CTAG	3 cut(s)	53, 117, 671
MaeIII	GTNAC	2 cut(s)	306, 451
MalI	GATC	3 cut(s)	98, 283, 481
MboI	GATC	3 cut(s)	96, 281, 479
MboII	GAAGA	5 cut(s)	262, 265, 674, 930, 949
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	2 cut(s)	281, 479
MhlI	GDGCHC	2 cut(s)	371, 928
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	8 cut(s)	42, 135, 430, 576, 590, 756, 804, 898
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	6 cut(s)	339, 357, 625, 804, 830, 833
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	963
MslI	CAYNNNNRTG	2 cut(s)	374, 449
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	2 cut(s)	260, 311
MspR9I	CCNGG	3 cut(s)	90, 260, 778
MunI	CAATTG	1 cut(s)	804
MvaI	CCWGG	2 cut(s)	90, 778
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	96, 281, 479
NlaIII	CATG	7 cut(s)	41, 103, 185, 213, 355, 571, 769
NlaIV	GGNNCC	2 cut(s)	283, 782
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	306, 451
NspI	RCATGY	1 cut(s)	571
OliI	CACNNNNGTG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	99
PciI	ACATGT	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	666
PflFI	GACNNNGTC	1 cut(s)	695
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	816, 889
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	88, 776
PspEI	GGTNACC	1 cut(s)	306
PspGI	CCWGG	2 cut(s)	88, 776
PspN4I	GGNNCC	2 cut(s)	283, 782
PspPI	GGNCC	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	2 cut(s)	281, 479
PsyI	GACNNNGTC	1 cut(s)	695
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	374, 449
SaqAI	TTAA	1 cut(s)	963
SatI	GCNGC	2 cut(s)	815, 888
Sau3AI	GATC	3 cut(s)	96, 281, 479
Sau96I	GGNCC	1 cut(s)	525
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	3 cut(s)	90, 260, 778
SduI	GDGCHC	2 cut(s)	371, 928
SfaNI	GCATC	2 cut(s)	481, 739
SfcI	CTRYAG	2 cut(s)	825, 832
SmiMI	CAYNNNNRTG	2 cut(s)	374, 449
SmlI	CTYRAG	1 cut(s)	891
SmoI	CTYRAG	1 cut(s)	891
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	8 cut(s)	42, 135, 430, 576, 590, 756, 804, 898
SspMI	CTAG	3 cut(s)	53, 117, 671
StyD4I	CCNGG	3 cut(s)	88, 258, 776
StyI	CCWWGG	2 cut(s)	336, 372
TaaI	ACNGT	2 cut(s)	76, 250
TaqI	TCGA	4 cut(s)	78, 158, 630, 701
TasI	AATT	8 cut(s)	42, 135, 430, 576, 590, 756, 804, 898
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	306, 451
TseI	GCWGC	2 cut(s)	814, 887
Tsp45I	GTSAC	2 cut(s)	306, 451
TspDTI	ATGAA	3 cut(s)	62, 116, 170
TspRI	CASTG	1 cut(s)	493
Tth111I	GACNNNGTC	1 cut(s)	695
VneI	GTGCAC	2 cut(s)	367, 924
XapI	RAATTY	3 cut(s)	590, 756, 898
XceI	RCATGY	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	3 cut(s)	53, 117, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.