Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

15523783 .. 15525432

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGATGAAATGGAGTCCGACCCGGATCAGGGATTGGATAATGGTGGTGAGTTTTCGTTAAAGGCTCTTAATTTGATGAAATTTGATGGAAATGGAGGGTGGAATGGTTGGATTGGCGGCAGGACGACGAGGGAGGCTCAGCTGGCCGGGGTGAGACCCCAAACCCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCAGTGGACGGCATCATAACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCGACCGGTCGCCGGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGATGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTGCCCCGATTTGGTTGAGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCGGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGTGAGAAACCTTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGGGTCTACAGACACTATTTGGAAGTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

236

Amino Acids

26.0

Weight (kDa)

5.3

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	79 - 184	1.2e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	81 - 203	2.4e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	566
AciI	CCGC	3 cut(s)	117, 488, 566
AclWI	GGATC	3 cut(s)	33, 348, 361
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	5 cut(s)	28, 29, 382, 450, 505
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	392, 547, 647
AjnI	CCWGG	2 cut(s)	178, 676
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	4 cut(s)	142, 424, 459, 493
AluI	AGCT	4 cut(s)	142, 424, 459, 493
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	148
Alw44I	GTGCAC	1 cut(s)	439
AlwI	GGATC	3 cut(s)	33, 348, 361
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	144, 513
ApaLI	GTGCAC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	80
AsiGI	ACCGGT	1 cut(s)	375
AsuC2I	CCSGG	2 cut(s)	23, 148
AsuHPI	GGTGA	2 cut(s)	59, 163
BaeGI	GKGCMC	2 cut(s)	443, 500
BamHI	GGATCC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	3 cut(s)	80, 424, 478
BceAI	ACGGC	3 cut(s)	224, 286, 305
BciT130I	CCWGG	2 cut(s)	180, 678
BcnI	CCSGG	2 cut(s)	23, 148
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	684
BisI	GCNGC	2 cut(s)	118, 654
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	2 cut(s)	119, 655
Bme1390I	CCNGG	4 cut(s)	23, 148, 180, 678
BmiI	GGNNCC	2 cut(s)	204, 355
BmrFI	CCNGG	4 cut(s)	23, 148, 180, 678
BmsI	GCATC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	23, 148
BsaAI	YACGTR	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	4 cut(s)	147, 240, 408, 677
BsaWI	WCCGGW	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 29, 382, 450, 505
Bse118I	RCCGGY	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	180, 678
BseDI	CCNNGG	4 cut(s)	147, 240, 408, 677
BseGI	GGATG	2 cut(s)	10, 435
BseLI	CCNNNNNNNGG	5 cut(s)	28, 29, 382, 450, 505
BseMII	CTCAG	1 cut(s)	152
BseSI	GKGCMC	2 cut(s)	443, 500
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	566
Bsh1285I	CGRYCG	2 cut(s)	376, 380
BshFI	GGCC	2 cut(s)	146, 515
BshTI	ACCGGT	1 cut(s)	375
BsiEI	CGRYCG	2 cut(s)	376, 380
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	4 cut(s)	23, 147, 376, 383
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	5 cut(s)	28, 29, 382, 450, 505
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	146, 515
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	443, 500
Bsp143I	GATC	4 cut(s)	25, 171, 334, 353
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	3 cut(s)	117, 488, 566
BspANI	GGCC	2 cut(s)	146, 515
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	204, 355
BspPI	GGATC	3 cut(s)	33, 348, 361
BspTNI	GGTCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	4 cut(s)	147, 240, 408, 677
BssMI	GATC	4 cut(s)	25, 171, 334, 353
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	180, 678
Bst4CI	ACNGT	3 cut(s)	187, 257, 594
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	144, 237
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	10, 435
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	4 cut(s)	28, 174, 337, 356
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	4 cut(s)	25, 171, 334, 353
BstMCI	CGRYCG	2 cut(s)	376, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 465
BstNI	CCWGG	2 cut(s)	180, 678
BstSCI	CCNGG	4 cut(s)	21, 146, 178, 676
BstSFI	CTRYAG	1 cut(s)	684
BstSLI	GKGCMC	2 cut(s)	443, 500
BstSNI	TACGTA	1 cut(s)	328
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	146, 515
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	10, 435
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	144, 237
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	375
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	329
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	2 cut(s)	282, 469
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	4 cut(s)	27, 173, 336, 355
DpnII	GATC	4 cut(s)	25, 171, 334, 353
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	503
Eco105I	TACGTA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	178, 676
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	285, 472
FaiI	YATR	7 cut(s)	278, 283, 462, 470, 539, 705, 709
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	2 cut(s)	281, 468
FauI	CCCGC	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	2 cut(s)	118, 654
FokI	GGATG	2 cut(s)	17, 442
Fsp4HI	GCNGC	2 cut(s)	118, 654
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	2 cut(s)	118, 654
HaeIII	GGCC	2 cut(s)	146, 515
HapII	CCGG	4 cut(s)	23, 147, 376, 383
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	285, 472
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	2 cut(s)	14, 617
HpaII	CCGG	4 cut(s)	23, 147, 376, 383
HphI	GGTGA	2 cut(s)	59, 163
Hpy166II	GTNNAC	4 cut(s)	268, 325, 441, 684
Hpy188I	TCNGA	2 cut(s)	19, 601
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	4 cut(s)	268, 325, 441, 684
Hpy99I	CGWCG	2 cut(s)	130, 566
HpyCH4III	ACNGT	3 cut(s)	187, 257, 594
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 465
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	285, 472
Kzo9I	GATC	4 cut(s)	25, 171, 334, 353
LmnI	GCTCC	2 cut(s)	490, 536
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	27, 173, 336, 355
MboI	GATC	4 cut(s)	25, 171, 334, 353
MboII	GAAGA	5 cut(s)	235, 242, 334, 337, 665
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	443, 500
MluCI	AATT	4 cut(s)	70, 80, 287, 648
MlyI	GAGTC	2 cut(s)	23, 611
MmeI	TCCRAC	3 cut(s)	42, 89, 579
MnlI	CCTC	9 cut(s)	89, 123, 127, 411, 429, 458, 505, 570, 678
MseI	TTAA	3 cut(s)	59, 69, 480
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	4 cut(s)	23, 147, 376, 383
MspR9I	CCNGG	4 cut(s)	23, 148, 180, 678
MvaI	CCWGG	2 cut(s)	180, 678
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	143, 465
NciI	CCSGG	2 cut(s)	23, 148
NdeII	GATC	4 cut(s)	25, 171, 334, 353
NlaIII	CATG	2 cut(s)	285, 472
NlaIV	GGNNCC	2 cut(s)	204, 355
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	523
OliI	CACNNNNGTG	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 324
PflFI	GACNNNGTC	1 cut(s)	620
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	119, 655
PleI	GAGTC	2 cut(s)	22, 611
PpsI	GAGTC	2 cut(s)	22, 611
Ppu21I	YACGTR	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	178, 676
PspGI	CCWGG	2 cut(s)	178, 676
PspN4I	GGNNCC	2 cut(s)	204, 355
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	59, 69, 480
SatI	GCNGC	2 cut(s)	118, 654
Sau3AI	GATC	4 cut(s)	25, 171, 334, 353
SchI	GAGTC	2 cut(s)	23, 611
ScrFI	CCNGG	4 cut(s)	23, 148, 180, 678
SduI	GDGCHC	2 cut(s)	443, 500
SetI	ASST	7 cut(s)	144, 330, 426, 440, 461, 495, 642
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	446
SnaBI	TACGTA	1 cut(s)	328
Sse9I	AATT	4 cut(s)	70, 80, 287, 648
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	3 cut(s)	117, 488, 566
SspMI	CTAG	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	4 cut(s)	21, 146, 178, 676
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	187, 257, 594
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	3 cut(s)	174, 221, 230
TaqII	GACCGA	1 cut(s)	610
TasI	AATT	4 cut(s)	70, 80, 287, 648
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	59, 69, 480
Tru9I	TTAA	3 cut(s)	59, 69, 480
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	3 cut(s)	21, 92, 206
TspGWI	ACGGA	3 cut(s)	377, 523, 544
TspRI	CASTG	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	620
VneI	GTGCAC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.