Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Reverse (-)

14505063 .. 14512884

Gene Structure 7822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGGAAACATTTTTGCAATATACAAGCCCATCTTGCATGGACTAATGAAGCTGGCCGGGTTGAGACCCCAAACTCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCGGTGGACGGCATCATGACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCCACCGGTCGCCGGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGAGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGTGAGAAACATTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGATTGGGTCTACAGACACTATTTGGAAGCAATGTTTGACAACCGAAGGGAGAGGGAAGAACTTCTAGAGGCTTTGGTCATCAGTGACGAGGATTTCACCGTGGCTAATTATCCACAGAGGGTGTATCTTTTGTGGGGAGCGAATGACAAGATCTTCGACATAGAATCTGCAAGCAACCTCAACAAGCAATTAGGCAACAACGCATCAGTCTATCATATAGAGAAAGCAGAAGTCATGCATGTTCATGATGGTCAAGATTTTTTACAAGTTGCCAAGAGAAATATAGAACCTACTGATAATGGGAGAGCTAGTAGTCCAGGGAACACAGTTAGGCTAGGAACTCCTACTACCAATGATAATCAGTTTGCCATTTTGGCTCAAGATGTCATTGTAGGGGCTGCCAATGATTTAATTGAGCAATTAGCAGACCAAGTGTTCCTTGAACCAAATGATCAATCCATTGCCGCAGAGCATTCATGGGAGATCACTATTCAGGCTTCAGTTGATGAGGGGGACTCAGTCCCTACCTCCCCAATTGTGATGGAGGGAAATGCAGTTGTTGTTCAAGGGCCAGAGGACGAAACGCATCAGCACGGTTGCTTTGTTACATGTTTGGTCTGCAAGTCTGTAGGTGCTGCTGCTGCAATGGGATTGAAATTACATGAGAGTGATTCAGCTCAGAAACATCTTTATCATCTTATCAACAACAACATTCATCAAGTATACAACACAAGAGATACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

443

Amino Acids

49.21

Weight (kDa)

5.25

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	49 - 272	1.5e-16	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	51 - 249	2.5e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	597, 1311
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	173, 398, 1053
AclWI	GGATC	2 cut(s)	258, 271
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	1071
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	240, 407
AfiI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
AflIII	ACRYGT	1 cut(s)	1196
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	302, 457, 557, 1031, 1154, 1243
AjnI	CCWGG	2 cut(s)	88, 904
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	6 cut(s)	52, 334, 369, 403, 896, 1265
AluI	AGCT	6 cut(s)	52, 334, 369, 403, 896, 1265
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	258, 271
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	54, 423, 1157
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	5 cut(s)	563, 986, 1223, 1226, 1229
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	1157
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	550, 973, 1210, 1213, 1216
BccI	CCATC	4 cut(s)	38, 388, 830, 1123
BceAI	ACGGC	3 cut(s)	134, 196, 215
BciT130I	CCWGG	2 cut(s)	90, 906
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	4 cut(s)	77, 653, 897, 923
BfmI	CTRYAG	2 cut(s)	598, 1215
BglI	GCCNNNNNGGC	1 cut(s)	962
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	6 cut(s)	564, 987, 1053, 1224, 1227, 1230
BlsI	GCNGC	6 cut(s)	565, 988, 1054, 1225, 1228, 1231
Bme1390I	CCNGG	3 cut(s)	58, 90, 906
BmgT120I	GGNCC	1 cut(s)	1157
BmiI	GGNNCC	2 cut(s)	114, 265
BmrFI	CCNGG	3 cut(s)	58, 90, 906
BmsI	GCATC	3 cut(s)	192, 800, 1183
BplI	GAGNNNNNCTC	2 cut(s)	1088, 1120
BpuEI	CTTGAG	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	2 cut(s)	238, 1329
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	150, 318, 687, 905
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 883, 913
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	3 cut(s)	624, 1047, 1239
BseBI	CCWGG	2 cut(s)	90, 906
BseDI	CCNNGG	4 cut(s)	150, 318, 687, 905
BseLI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BseMI	GCAATG	3 cut(s)	624, 1047, 1239
BseMII	CTCAG	2 cut(s)	1119, 1280
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	5 cut(s)	550, 973, 1210, 1213, 1216
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	56, 425, 1159
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	4 cut(s)	57, 286, 293, 477
BslFI	GGGAC	2 cut(s)	1094, 1115
BslI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	1094, 1115
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	3 cut(s)	56, 425, 1159
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
BspACI	CCGC	3 cut(s)	173, 398, 1053
BspANI	GGCC	3 cut(s)	56, 425, 1159
BspCNI	CTCAG	2 cut(s)	1118, 1279
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	2 cut(s)	186, 832
BspLI	GGNNCC	2 cut(s)	114, 265
BspPI	GGATC	2 cut(s)	258, 271
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	3 cut(s)	624, 1047, 1239
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	4 cut(s)	150, 318, 687, 905
BssMI	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
BssNAI	GTATAC	1 cut(s)	1312
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	1312
Bst2UI	CCWGG	2 cut(s)	90, 906
Bst4CI	ACNGT	6 cut(s)	97, 167, 504, 688, 916, 1184
BstACI	GRCGYC	1 cut(s)	474
BstBAI	YACGTR	2 cut(s)	238, 1329
BstC8I	GCNNGC	3 cut(s)	54, 147, 760
BstDEI	CTNAG	2 cut(s)	1105, 1266
BstDSI	CCRYGG	2 cut(s)	150, 687
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	6 cut(s)	84, 247, 266, 741, 1042, 1074
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 375, 962, 1229
BstNI	CCWGG	2 cut(s)	90, 906
BstNSI	RCATGY	2 cut(s)	830, 1200
BstSCI	CCNGG	3 cut(s)	56, 88, 904
BstSFI	CTRYAG	2 cut(s)	598, 1215
BstSLI	GKGCMC	1 cut(s)	353
BstSNI	TACGTA	2 cut(s)	238, 1329
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	5 cut(s)	550, 973, 1210, 1213, 1216
BstX2I	RGATCY	2 cut(s)	263, 738
BstYI	RGATCY	2 cut(s)	263, 738
BstZ17I	GTATAC	1 cut(s)	1312
BsuRI	GGCC	3 cut(s)	56, 425, 1159
BtgI	CCRYGG	2 cut(s)	150, 687
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	54, 147, 760
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	2 cut(s)	186, 832
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	1157
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	239, 406
CspAI	ACCGGT	1 cut(s)	285
CviQI	GTAC	2 cut(s)	239, 406
DdeI	CTNAG	2 cut(s)	1105, 1266
DpnI	GATC	6 cut(s)	83, 246, 265, 740, 1041, 1073
DpnII	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	413
Eco105I	TACGTA	2 cut(s)	238, 1329
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	1071
EcoRII	CCWGG	2 cut(s)	88, 904
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	318
FalI	AAGNNNNNCTT	4 cut(s)	17, 49, 1011, 1043
FaqI	GGGAC	2 cut(s)	1094, 1115
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	2 cut(s)	597, 1311
Fnu4HI	GCNGC	6 cut(s)	564, 987, 1053, 1224, 1227, 1230
Fsp4HI	GCNGC	6 cut(s)	564, 987, 1053, 1224, 1227, 1230
FspBI	CTAG	4 cut(s)	77, 653, 897, 923
GluI	GCNGC	6 cut(s)	564, 987, 1053, 1224, 1227, 1230
HaeIII	GGCC	3 cut(s)	56, 425, 1159
HapII	CCGG	4 cut(s)	57, 286, 293, 477
HgaI	GACGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	4 cut(s)	527, 752, 1103, 1259
HpaII	CCGG	4 cut(s)	57, 286, 293, 477
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	5 cut(s)	178, 235, 351, 598, 1312
Hpy188I	TCNGA	2 cut(s)	511, 1269
Hpy188III	TCNNGA	8 cut(s)	77, 187, 524, 587, 653, 833, 842, 968
Hpy8I	GTNNAC	5 cut(s)	178, 235, 351, 598, 1312
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	6 cut(s)	97, 167, 504, 688, 916, 1184
HpyCH4IV	ACGT	2 cut(s)	237, 1328
HpyCH4V	TGCA	8 cut(s)	17, 37, 351, 758, 826, 1142, 1209, 1232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 375, 962, 1229
HpyF3I	CTNAG	2 cut(s)	1105, 1266
HpySE526I	ACGT	2 cut(s)	237, 1328
Hsp92I	GRCGYC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
LmnI	GCTCC	3 cut(s)	400, 446, 725
Lsp1109I	GCAGC	5 cut(s)	550, 973, 1210, 1213, 1216
LweI	GCATC	3 cut(s)	192, 800, 1183
MaeI	CTAG	4 cut(s)	77, 653, 897, 923
MaeII	ACGT	2 cut(s)	237, 1328
MaeIII	GTNAC	3 cut(s)	433, 671, 1192
MalI	GATC	6 cut(s)	83, 246, 265, 740, 1041, 1073
MboI	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
MboII	GAAGA	7 cut(s)	145, 152, 244, 247, 575, 656, 733
MfeI	CAATTG	1 cut(s)	1122
MflI	RGATCY	2 cut(s)	263, 738
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	8 cut(s)	197, 558, 694, 776, 999, 1007, 1122, 1244
MlyI	GAGTC	2 cut(s)	521, 1097
MmeI	TCCRAC	1 cut(s)	489
Mph1103I	ATGCAT	1 cut(s)	828
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	2 cut(s)	390, 998
MslI	CAYNNNNRTG	3 cut(s)	356, 831, 1254
MspI	CCGG	4 cut(s)	57, 286, 293, 477
MspR9I	CCNGG	3 cut(s)	58, 90, 906
MunI	CAATTG	1 cut(s)	1122
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	2 cut(s)	90, 906
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	34, 375, 962, 1229
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
NlaIV	GGNNCC	2 cut(s)	114, 265
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	433, 671
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	2 cut(s)	830, 1200
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	2 cut(s)	186, 832
PceI	AGGCCT	1 cut(s)	425
PciI	ACATGT	1 cut(s)	1196
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 234
PctI	GAATGC	1 cut(s)	1060
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	752, 1259
PflFI	GACNNNGTC	2 cut(s)	530, 1106
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	6 cut(s)	565, 988, 1054, 1225, 1228, 1231
PleI	GAGTC	2 cut(s)	521, 1097
PpsI	GAGTC	2 cut(s)	521, 1097
Ppu21I	YACGTR	2 cut(s)	238, 1329
PscI	ACATGT	1 cut(s)	1196
Psp6I	CCWGG	2 cut(s)	88, 904
PspGI	CCWGG	2 cut(s)	88, 904
PspN4I	GGNNCC	2 cut(s)	114, 265
PspPI	GGNCC	1 cut(s)	1157
PsrI	GAACNNNNNNTAC	2 cut(s)	919, 951
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	263, 738
PsyI	GACNNNGTC	2 cut(s)	530, 1106
RsaI	GTAC	2 cut(s)	240, 407
RsaNI	GTAC	2 cut(s)	239, 406
RseI	CAYNNNNRTG	3 cut(s)	356, 831, 1254
SaqAI	TTAA	2 cut(s)	390, 998
SatI	GCNGC	6 cut(s)	564, 987, 1053, 1224, 1227, 1230
Sau3AI	GATC	6 cut(s)	81, 244, 263, 738, 1039, 1071
Sau96I	GGNCC	1 cut(s)	1157
SchI	GAGTC	2 cut(s)	521, 1097
ScrFI	CCNGG	3 cut(s)	58, 90, 906
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	192, 800, 1183
SfcI	CTRYAG	2 cut(s)	598, 1215
SmiMI	CAYNNNNRTG	3 cut(s)	356, 831, 1254
SmlI	CTYRAG	1 cut(s)	966
SmoI	CTYRAG	1 cut(s)	966
SnaBI	TACGTA	2 cut(s)	238, 1329
Sse9I	AATT	8 cut(s)	197, 558, 694, 776, 999, 1007, 1122, 1244
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	3 cut(s)	173, 398, 1053
SspMI	CTAG	4 cut(s)	77, 653, 897, 923
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	56, 88, 904
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	6 cut(s)	97, 167, 504, 688, 916, 1184
TaiI	ACGT	2 cut(s)	240, 1331
TaqI	TCGA	4 cut(s)	84, 131, 140, 744
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	8 cut(s)	197, 558, 694, 776, 999, 1007, 1122, 1244
TauI	GCSGC	1 cut(s)	1055
TfiI	GAWTC	2 cut(s)	752, 1259
Tru1I	TTAA	2 cut(s)	390, 998
Tru9I	TTAA	2 cut(s)	390, 998
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	433, 671
TseI	GCWGC	5 cut(s)	563, 986, 1223, 1226, 1229
Tsp45I	GTSAC	2 cut(s)	433, 671
TspDTI	ATGAA	5 cut(s)	62, 116, 821, 1053, 1292
TspGWI	ACGGA	3 cut(s)	287, 433, 454
TspRI	CASTG	1 cut(s)	676
Tth111I	GACNNNGTC	2 cut(s)	530, 1106
VneI	GTGCAC	1 cut(s)	349
XbaI	TCTAGA	2 cut(s)	76, 652
XceI	RCATGY	2 cut(s)	830, 1200
XmiI	GTMKAC	2 cut(s)	597, 1311
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	4 cut(s)	77, 653, 897, 923
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.