Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Reverse (-)

12811322 .. 12813359

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G096000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTGAACATTTTTTCAGTATACAAGTTTATTCTGCATGGAATTATGAAACTAGTTGGGGTGAGACCCCAAACTGTCGAAATAGAGCCAGGAACGATCATGAACTTCTGGGTCTCTAGTAATATCCCCAACAAAATTGAAAACACACCAAAGAAATCGAAGCCAGCCGTGGTGTTCCTTCATGGCTTTGCAATGGATGGTATTTTCACATGGCAACTTCAAGTGCTATCTTTGGCCAAAAACTACGCCGTTTATGTCCCGGACTTTCTCTTCTTCGGGGGATCCATCACAGATAAATTAGATAGGTCACCGGAGTTTCAAGCTGAGTGTGTGGCCAAGGGTTTGAGGAAGATGGGGGTGGAGAGGTGCACCTTGGTGGGATTGAGCTATGGTGGGATGGTTGGGTTCAAAATGGCTGAGTTGCACCCCAATTTGGTTGAGTCCATTGTGGCGACTGGTTCAGTTTTGGCTTTGACCAGATCCATCAGTGATGCTTCTCTTGAGAGACTTGGGTTCAAATGCTGGCCTGATTACTTGCTTCCTGACTCGGTCAAAGGTGTGAGAAATATGTTTGAAATTGCTGCTTACAAGTTTCCTTATCTCCCTGATTGGATTTACAAAGATTGCCTTGAGGTTATGTTTGGCAACAGAAAGGAGAAGGAAGAACTTCTAGGGGCATTGGTAGTTGATGACAAGGACTTTACTATTGCTGATTTTCCACAGGCAATTAGGAGGCAGCGCAAAACTGCAATGTATAGAGGAGGCAGGCCACCTTGTTCAAATGGAAAGACCTTTCGTTTACAACAAGCAGCTCAAGGAAATTCTTGCTTCTTTTTCAGAAGATGTGCACCAAGACTGAAGAGACCTTTTTTATTTTTTTGCTTTTTATTAAGAACTAATGAGAGTTTTAGAGTGTTGGTTGGAAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

311

Amino Acids

35.18

Weight (kDa)

9.41

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AclWI	GGATC	3 cut(s)	276, 289, 474
AcoI	YGGCCR	2 cut(s)	234, 333
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	878
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	7 cut(s)	140, 221, 320, 409, 517, 575, 780
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	3 cut(s)	323, 387, 812
AluI	AGCT	3 cut(s)	323, 387, 812
Alw21I	GWGCWC	2 cut(s)	371, 850
Alw26I	GTCTC	4 cut(s)	58, 118, 499, 856
Alw44I	GTGCAC	2 cut(s)	367, 846
AlwI	GGATC	3 cut(s)	276, 289, 474
AoxI	GGCC	4 cut(s)	234, 333, 524, 767
ApaLI	GTGCAC	2 cut(s)	367, 846
ApeKI	GCWGC	3 cut(s)	581, 736, 809
ApoI	RAATTY	1 cut(s)	820
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	741
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	16, 73, 300
BaeGI	GKGCMC	2 cut(s)	371, 850
BalI	TGGCCA	2 cut(s)	236, 335
BamHI	GGATCC	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	371, 850
BbvI	GCAGC	3 cut(s)	568, 748, 821
BccI	CCATC	5 cut(s)	191, 293, 346, 391, 491
BceAI	ACGGC	2 cut(s)	152, 233
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	58, 118, 499, 856
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 117, 671
BisI	GCNGC	3 cut(s)	582, 737, 810
BlsI	GCNGC	3 cut(s)	583, 738, 811
Bme1390I	CCNGG	2 cut(s)	90, 260
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	90, 260
BmsI	GCATC	1 cut(s)	481
BpuEI	CTTGAG	3 cut(s)	521, 650, 798
BpuMI	CCSGG	1 cut(s)	260
BsaI	GGTCTC	3 cut(s)	58, 118, 856
BsaJI	CCNNGG	3 cut(s)	168, 336, 372
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	2 cut(s)	198, 756
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	168, 336, 372
BseGI	GGATG	2 cut(s)	202, 402
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	198, 756
BseMII	CTCAG	2 cut(s)	315, 408
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	774
BseSI	GKGCMC	2 cut(s)	371, 850
BseXI	GCAGC	3 cut(s)	568, 748, 821
BshFI	GGCC	4 cut(s)	236, 335, 526, 769
BsiHKAI	GWGCWC	2 cut(s)	371, 850
BsiSI	CCGG	2 cut(s)	260, 311
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	4 cut(s)	58, 118, 499, 856
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	236, 335, 526, 769
Bso31I	GGTCTC	3 cut(s)	58, 118, 856
Bsp1286I	GDGCHC	2 cut(s)	371, 850
Bsp143I	GATC	3 cut(s)	96, 281, 479
BspANI	GGCC	4 cut(s)	236, 335, 526, 769
BspCNI	CTCAG	2 cut(s)	316, 409
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	3 cut(s)	276, 289, 474
BspTNI	GGTCTC	3 cut(s)	58, 118, 856
BsrDI	GCAATG	2 cut(s)	198, 756
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	168, 336, 372
BssMI	GATC	3 cut(s)	96, 281, 479
BssNAI	GTATAC	1 cut(s)	22
BssT1I	CCWWGG	2 cut(s)	336, 372
Bst1107I	GTATAC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	275, 854
BstC8I	GCNNGC	3 cut(s)	165, 524, 767
BstDEI	CTNAG	2 cut(s)	324, 417
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	202, 402
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	3 cut(s)	99, 284, 482
BstMAI	GTCTC	4 cut(s)	58, 118, 499, 856
BstMBI	GATC	3 cut(s)	96, 281, 479
BstNI	CCWGG	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	88, 258
BstSLI	GKGCMC	2 cut(s)	371, 850
BstV1I	GCAGC	3 cut(s)	568, 748, 821
BstX2I	RGATCY	2 cut(s)	281, 479
BstYI	RGATCY	2 cut(s)	281, 479
BstZ17I	GTATAC	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	236, 335, 526, 769
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	202, 402
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	3 cut(s)	165, 524, 767
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	741
CviAII	CATG	4 cut(s)	38, 100, 182, 210
DdeI	CTNAG	2 cut(s)	324, 417
DpnI	GATC	3 cut(s)	98, 283, 481
DpnII	GATC	3 cut(s)	96, 281, 479
EaeI	YGGCCR	2 cut(s)	234, 333
Eam1104I	CTCTTC	2 cut(s)	275, 854
EarI	CTCTTC	2 cut(s)	275, 854
Eco130I	CCWWGG	2 cut(s)	336, 372
Eco31I	GGTCTC	3 cut(s)	58, 118, 856
Eco57I	CTGAAG	1 cut(s)	878
Eco91I	GGTNACC	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	336, 372
ErhI	CCWWGG	2 cut(s)	336, 372
FaeI	CATG	4 cut(s)	41, 103, 185, 213
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	37, 99, 181, 209
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	582, 737, 810
FokI	GGATG	2 cut(s)	209, 409
Fsp4HI	GCNGC	3 cut(s)	582, 737, 810
FspBI	CTAG	3 cut(s)	53, 117, 671
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	582, 737, 810
HaeIII	GGCC	4 cut(s)	236, 335, 526, 769
HapII	CCGG	2 cut(s)	260, 311
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	4 cut(s)	41, 103, 185, 213
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HinfI	GANTC	2 cut(s)	440, 545
HpaII	CCGG	2 cut(s)	260, 311
HphI	GGTGA	3 cut(s)	16, 73, 300
Hpy166II	GTNNAC	5 cut(s)	7, 22, 369, 800, 848
Hpy188I	TCNGA	1 cut(s)	839
Hpy188III	TCNNGA	3 cut(s)	100, 500, 542
Hpy8I	GTNNAC	5 cut(s)	7, 22, 369, 800, 848
HpyAV	CCTTC	2 cut(s)	188, 652
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	6 cut(s)	37, 191, 369, 424, 749, 848
HpyF3I	CTNAG	2 cut(s)	324, 417
Hsp92II	CATG	4 cut(s)	41, 103, 185, 213
HspAI	GCGC	1 cut(s)	739
Kzo9I	GATC	3 cut(s)	96, 281, 479
Lsp1109I	GCAGC	3 cut(s)	568, 748, 821
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	3 cut(s)	53, 117, 671
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	3 cut(s)	98, 283, 481
MboI	GATC	3 cut(s)	96, 281, 479
MboII	GAAGA	6 cut(s)	262, 265, 361, 674, 852, 871
MflI	RGATCY	2 cut(s)	281, 479
MhlI	GDGCHC	2 cut(s)	371, 850
MlsI	TGGCCA	2 cut(s)	236, 335
MluCI	AATT	7 cut(s)	42, 135, 296, 430, 576, 726, 820
MluNI	TGGCCA	2 cut(s)	236, 335
MlyI	GAGTC	2 cut(s)	449, 539
MmeI	TCCRAC	1 cut(s)	901
MnlI	CCTC	6 cut(s)	339, 357, 625, 726, 752, 755
Mox20I	TGGCCA	2 cut(s)	236, 335
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	2 cut(s)	236, 335
MseI	TTAA	1 cut(s)	890
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	2 cut(s)	236, 335
MspI	CCGG	2 cut(s)	260, 311
MspR9I	CCNGG	2 cut(s)	90, 260
MvaI	CCWGG	1 cut(s)	90
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	96, 281, 479
NlaIII	CATG	4 cut(s)	41, 103, 185, 213
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	666
PflFI	GACNNNGTC	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	583, 738, 811
PleI	GAGTC	2 cut(s)	448, 539
PpsI	GAGTC	2 cut(s)	448, 539
Psp6I	CCWGG	1 cut(s)	88
PspEI	GGTNACC	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	281, 479
PsyI	GACNNNGTC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	890
SatI	GCNGC	3 cut(s)	582, 737, 810
Sau3AI	GATC	3 cut(s)	96, 281, 479
SchI	GAGTC	2 cut(s)	449, 539
ScrFI	CCNGG	2 cut(s)	90, 260
SduI	GDGCHC	2 cut(s)	371, 850
SfaNI	GCATC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	3 cut(s)	500, 629, 813
SmoI	CTYRAG	3 cut(s)	500, 629, 813
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	7 cut(s)	42, 135, 296, 430, 576, 726, 820
SspMI	CTAG	3 cut(s)	53, 117, 671
StyD4I	CCNGG	2 cut(s)	88, 258
StyI	CCWWGG	2 cut(s)	336, 372
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	78, 158
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	7 cut(s)	42, 135, 296, 430, 576, 726, 820
Tru1I	TTAA	1 cut(s)	890
Tru9I	TTAA	1 cut(s)	890
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	3 cut(s)	581, 736, 809
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	3 cut(s)	62, 116, 170
TspRI	CASTG	1 cut(s)	493
Tth111I	GACNNNGTC	1 cut(s)	548
VneI	GTGCAC	2 cut(s)	367, 846
XapI	RAATTY	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	3 cut(s)	53, 117, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.