Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Reverse (-)

10586714 .. 10589012

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1074900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGGAACATTTTTGCAGTCTGCAAGTTTATTCTGCGCGGGGTTATGAAGCTAGTAGGGATGAGATCCCAAACTGTGGAAATCGAGCCAGGAACTGTCATGAACTTCTGGGTCCCCAACAAAATTACAGAAAACCAAAAATTCAAGCCAGCCGTGGTATTCATCCATGGGTTTGCAATGGATGGCATCACAACATGGCAATTTCAAGTGCTATCTCTTGCCAAAGACTACGCAGTTTACGTTCCGGACCTTCTCTTCTTTGGCGGCTCCACCACGGATAAACCGGATAGGTCACCGGAGTTTCAAGCGGAGTGTGTGGCAAAGGGTTTGAGGATGCTTGGGGTGGAGAGGTGCACCTTGGTGGGGTTGAGCTATGGAGGCATGGTTGGGTTTAAGATGGCTGAGTTGTACCCTAATTTGGTTGAGTCTATGGTGGTGACTTGCTCCGTTATGGCTTTGACCAGATCAATCACCAATGCATCTCTTGAGAGACTGGGGTTCAAATGCTGGTCAGATTACTTGCTTCCCGACTCAGTTAAGGGTGTGAGAAACATATTTGAAATTGCTACCTATAAATTTCCACATCTCCCCGATTGGATTTGCAAACACTATTTGGAGGTTATGTTTGAACATAGAGAAGAGATGGAGGAACTTTTGGCGGCATTGGTTGTGGATGACAAGGACTTTACAGCTGCTCATTACCCACAGCGGGTGCATCTGTTGTGGGGAGAGAATGACAAGATTTTCGACATGGAAACTGCCAAAAATCTCAAGAACCAACTAGGAGACAACGCAACTCTAAAGTCCATTGAGAAGACCGGCCATCTTGTTCAAGTGGAAGGACCATTTGTTTACAACGGGGAACTCAAGAGATTTCTCTCTTCTCTGTTACAAGAAAATGTGCACGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

305

Amino Acids

34.52

Weight (kDa)

5.8

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	50 - 149	6.5e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	52 - 280	2.2e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccII	CGCG	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	5 cut(s)	39, 264, 308, 659, 709
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	2 cut(s)	140, 575
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	4 cut(s)	76, 363, 418, 709
AgsI	TTSAA	7 cut(s)	145, 206, 305, 502, 560, 629, 833
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	3 cut(s)	52, 372, 692
AluI	AGCT	3 cut(s)	52, 372, 692
Alw21I	GWGCWC	2 cut(s)	356, 906
Alw26I	GTCTC	2 cut(s)	484, 780
Alw44I	GTGCAC	2 cut(s)	352, 902
AlwI	GGATC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	820
ApaLI	GTGCAC	2 cut(s)	352, 902
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	2 cut(s)	140, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	112, 247, 842
AsuHPI	GGTGA	3 cut(s)	285, 448, 463
AvaII	GGWCC	3 cut(s)	112, 247, 842
BaeGI	GKGCMC	2 cut(s)	356, 906
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	2 cut(s)	356, 906
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	4 cut(s)	176, 391, 637, 831
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	484, 780
BfaI	CTAG	2 cut(s)	53, 782
BisI	GCNGC	3 cut(s)	265, 660, 693
BlsI	GCNGC	3 cut(s)	266, 661, 694
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	3 cut(s)	112, 247, 842
BmgT120I	GGNCC	3 cut(s)	112, 247, 842
BmiI	GGNNCC	3 cut(s)	113, 114, 268
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	4 cut(s)	195, 324, 488, 724
BmuI	ACTGGG	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	821
BpuEI	CTTGAG	3 cut(s)	506, 755, 851
BsaJI	CCNNGG	4 cut(s)	153, 166, 273, 357
BsaWI	WCCGGW	3 cut(s)	244, 283, 295
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 399, 608, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 363, 418, 709
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	4 cut(s)	153, 166, 273, 357
BseGI	GGATG	5 cut(s)	66, 162, 187, 339, 679
BseLI	CCNNNNNNNGG	4 cut(s)	76, 363, 418, 709
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	393, 546
BseNI	ACTGG	1 cut(s)	498
BseSI	GKGCMC	2 cut(s)	356, 906
BseXI	GCAGC	1 cut(s)	679
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	356, 906
BsiSI	CCGG	4 cut(s)	245, 284, 296, 819
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	4 cut(s)	76, 363, 418, 709
BsmAI	GTCTC	2 cut(s)	484, 780
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	822
Bsp1286I	GDGCHC	2 cut(s)	356, 906
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	65, 464
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	5 cut(s)	39, 264, 308, 659, 709
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	2 cut(s)	394, 545
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	113, 114, 268
BspPI	GGATC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	4 cut(s)	153, 166, 273, 357
BssMI	GATC	2 cut(s)	65, 464
BssT1I	CCWWGG	2 cut(s)	166, 357
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	76, 97, 912
Bst6I	CTCTTC	3 cut(s)	260, 633, 886
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	402, 532
BstDSI	CCRYGG	3 cut(s)	153, 166, 273
BstEII	GGTNACC	1 cut(s)	291
BstF5I	GGATG	5 cut(s)	66, 162, 187, 339, 679
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	68, 467
BstMAI	GTCTC	2 cut(s)	484, 780
BstMBI	GATC	2 cut(s)	65, 464
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	88
BstSLI	GKGCMC	2 cut(s)	356, 906
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	822
BtgI	CCRYGG	3 cut(s)	153, 166, 273
BtsCI	GGATG	5 cut(s)	66, 162, 187, 339, 679
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	3 cut(s)	112, 247, 842
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	5 cut(s)	100, 167, 195, 382, 751
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	402, 532
DpnI	GATC	2 cut(s)	67, 466
DpnII	GATC	2 cut(s)	65, 464
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	3 cut(s)	260, 633, 886
EarI	CTCTTC	3 cut(s)	260, 633, 886
Eco130I	CCWWGG	2 cut(s)	166, 357
Eco47I	GGWCC	3 cut(s)	112, 247, 842
Eco91I	GGTNACC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	166, 357
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	166, 357
FaeI	CATG	5 cut(s)	103, 170, 198, 385, 754
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	5 cut(s)	99, 166, 194, 381, 750
FauI	CCCGC	2 cut(s)	32, 702
Fnu4HI	GCNGC	3 cut(s)	265, 660, 693
FokI	GGATG	5 cut(s)	73, 149, 194, 346, 686
Fsp4HI	GCNGC	3 cut(s)	265, 660, 693
FspBI	CTAG	2 cut(s)	53, 782
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	265, 660, 693
HaeIII	GGCC	1 cut(s)	822
HapII	CCGG	4 cut(s)	245, 284, 296, 819
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	103, 170, 198, 385, 754
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	425, 530
HpaII	CCGG	4 cut(s)	245, 284, 296, 819
HphI	GGTGA	3 cut(s)	285, 448, 463
Hpy166II	GTNNAC	4 cut(s)	238, 354, 853, 904
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	6 cut(s)	100, 245, 485, 527, 772, 868
Hpy8I	GTNNAC	4 cut(s)	238, 354, 853, 904
HpyAV	CCTTC	2 cut(s)	260, 833
HpyCH4III	ACNGT	3 cut(s)	76, 97, 912
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	17, 24, 176, 354, 479, 603, 715, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	402, 532
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	103, 170, 198, 385, 754
HspAI	GCGC	1 cut(s)	37
KflI	GGGWCCC	1 cut(s)	112
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	65, 464
LmnI	GCTCC	2 cut(s)	272, 449
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	4 cut(s)	195, 324, 488, 724
MaeI	CTAG	2 cut(s)	53, 782
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	291, 436, 888
MalI	GATC	2 cut(s)	67, 466
MboI	GATC	2 cut(s)	65, 464
MboII	GAAGA	4 cut(s)	247, 650, 826, 873
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	356, 906
MluCI	AATT	6 cut(s)	123, 140, 200, 415, 561, 575
MlyI	GAGTC	2 cut(s)	434, 524
MnlI	CCTC	5 cut(s)	324, 342, 371, 610, 640
Mph1103I	ATGCAT	1 cut(s)	481
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	393, 537
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	692, 709
MspI	CCGG	4 cut(s)	245, 284, 296, 819
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	65, 464
NlaIII	CATG	5 cut(s)	103, 170, 198, 385, 754
NlaIV	GGNNCC	3 cut(s)	113, 114, 268
NmuCI	GTSAC	2 cut(s)	291, 436
NsiI	ATGCAT	1 cut(s)	481
OliI	CACNNNNGTG	1 cut(s)	359
PagI	TCATGA	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	266, 661, 694
PleI	GAGTC	2 cut(s)	433, 524
PpsI	GAGTC	2 cut(s)	433, 524
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	88
PspEI	GGTNACC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	113, 114, 268
PspPI	GGNCC	3 cut(s)	112, 247, 842
PspPPI	RGGWCCY	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	393, 537
SatI	GCNGC	3 cut(s)	265, 660, 693
Sau3AI	GATC	2 cut(s)	65, 464
Sau96I	GGNCC	3 cut(s)	112, 247, 842
SchI	GAGTC	2 cut(s)	434, 524
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	356, 906
SfaNI	GCATC	4 cut(s)	195, 324, 488, 724
SinI	GGWCC	3 cut(s)	112, 247, 842
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	3 cut(s)	485, 770, 866
SmoI	CTYRAG	3 cut(s)	485, 770, 866
Sse9I	AATT	6 cut(s)	123, 140, 200, 415, 561, 575
SsiI	CCGC	5 cut(s)	39, 264, 308, 659, 709
SspMI	CTAG	2 cut(s)	53, 782
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	166, 357
TaaI	ACNGT	3 cut(s)	76, 97, 912
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	84, 747
TasI	AATT	6 cut(s)	123, 140, 200, 415, 561, 575
TauI	GCSGC	2 cut(s)	267, 662
Tru1I	TTAA	2 cut(s)	393, 537
Tru9I	TTAA	2 cut(s)	393, 537
TseFI	GTSAC	2 cut(s)	291, 436
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	2 cut(s)	291, 436
TspDTI	ATGAA	3 cut(s)	62, 116, 151
TspGWI	ACGGA	2 cut(s)	290, 436
Van91I	CCANNNNNTGG	1 cut(s)	76
VneI	GTGCAC	2 cut(s)	352, 902
VpaK11BI	GGWCC	3 cut(s)	112, 247, 842
XapI	RAATTY	2 cut(s)	140, 575
XspI	CTAG	2 cut(s)	53, 782
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.