Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

43110000 .. 43112215

Gene Structure 2216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTGCACTCATTATGGTATGGTTGGACATACGGCCGATCACTGTAGACAATTGCAGGGTGACAATGATTCAAAGCCTTGTGATATTGAGAAACCTACTAGAGTTCCGCAGCCGGTGGTTCCCCAGGTATACAGAGTGAAGGAGAAGACTGCTTCAAAAATTCAGACTACAGAAGTTCAACCCTTAGCTGAGACACCTGACACTAATGCTGTGATTCCAGCACGCGCAGAAGTCATGCATGTTCATGATGGCCAAGATGCCACTTGGGCTGCCAATGATTTAATTGAGCAATTAGCAGACCAAGTGTTCCTTGAACCAAATGATCAATCCATTGCCGCAGAGCATTCAAGGGAGATCACTATTCAGGCTTCAGTTGATGAAGGGGACTCATTCCCTACCTCCCCAATTGTGACGGAAGGAAATGTAGTTGTTGTTCAAGGGCCAGAGGACGCCCTCCAGGTTCATATGACTTTGGGGGTGTTTGAGCCCAAAGTATTTTGGGCTGGGTCCGGTTTAGCGGCCCAAATAGAGAGCAACTTGGCAGGCACCGCGAGGGAATCCGGGCGGATTCCCCTCGAAGGCCCAGTTGGAGCCCACGATCAAGAGACCACGTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.25

Weight (kDa)

4.59

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	2 cut(s)	46, 129
AccII	CGCG	2 cut(s)	225, 551
AciI	CCGC	5 cut(s)	107, 336, 518, 549, 565
AcoI	YGGCCR	2 cut(s)	33, 250
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	6 cut(s)	72, 156, 179, 314, 348, 437
AjnI	CCWGG	2 cut(s)	123, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	185, 599
Alw44I	GTGCAC	1 cut(s)	4
AoxI	GGCC	5 cut(s)	33, 250, 440, 519, 580
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	109, 269
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	4 cut(s)	440, 507, 520, 581
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	2 cut(s)	489, 595
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	121, 256
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	2 cut(s)	125, 458
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	185, 599
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	43, 168
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	4 cut(s)	110, 270, 336, 519
BlsI	GCNGC	4 cut(s)	111, 271, 337, 520
Bme1390I	CCNGG	3 cut(s)	125, 458, 562
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	440, 507, 520, 581
BmiI	GGNNCC	4 cut(s)	120, 508, 547, 592
BmrFI	CCNGG	3 cut(s)	125, 458, 562
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	125, 458
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	8
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	121, 256
BseYI	CCCAGC	1 cut(s)	503
Bsh1236I	CGCG	2 cut(s)	225, 551
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	35, 252, 442, 521, 582
BshNI	GGYRCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	113, 510, 561
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	185, 599
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	5 cut(s)	35, 252, 442, 521, 582
Bso31I	GGTCTC	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	8, 489, 595
Bsp143I	GATC	4 cut(s)	37, 322, 354, 598
BspACI	CCGC	5 cut(s)	107, 336, 518, 549, 565
BspANI	GGCC	5 cut(s)	35, 252, 442, 521, 582
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	2 cut(s)	225, 551
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	4 cut(s)	120, 508, 547, 592
BspT107I	GGYRCC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	584
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	4 cut(s)	37, 322, 354, 598
BssNAI	GTATAC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	130
Bst2UI	CCWGG	2 cut(s)	125, 458
Bst4CI	ACNGT	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	223, 544
BstDEI	CTNAG	2 cut(s)	184, 189
BstFNI	CGCG	2 cut(s)	225, 551
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	40, 325, 357, 601
BstMAI	GTCTC	2 cut(s)	185, 599
BstMBI	GATC	4 cut(s)	37, 322, 354, 598
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 548
BstNI	CCWGG	2 cut(s)	125, 458
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	123, 456, 560
BstSFI	CTRYAG	2 cut(s)	43, 168
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	225, 551
BstV1I	GCAGC	2 cut(s)	121, 256
BstV2I	GAAGAC	1 cut(s)	152
BstZ17I	GTATAC	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	5 cut(s)	35, 252, 442, 521, 582
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	223, 544
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	440, 507, 520, 581
CseI	GACGC	1 cut(s)	458
CviAII	CATG	3 cut(s)	235, 239, 245
DdeI	CTNAG	2 cut(s)	184, 189
DpnI	GATC	4 cut(s)	39, 324, 356, 600
DpnII	GATC	4 cut(s)	37, 322, 354, 598
EaeI	YGGCCR	2 cut(s)	33, 250
EagI	CGGCCG	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	580
EclXI	CGGCCG	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	489, 595
Eco31I	GGTCTC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	507
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	123, 456
EcoT22I	ATGCAT	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	489, 595
FaeI	CATG	3 cut(s)	238, 242, 248
FaiI	YATR	9 cut(s)	15, 20, 30, 130, 236, 240, 246, 465, 467
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	234, 238, 244
FauNDI	CATATG	1 cut(s)	465
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	2 cut(s)	46, 129
Fnu4HI	GCNGC	4 cut(s)	110, 270, 336, 519
FriOI	GRGCYC	2 cut(s)	489, 595
Fsp4HI	GCNGC	4 cut(s)	110, 270, 336, 519
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	110, 270, 336, 519
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	5 cut(s)	35, 252, 442, 521, 582
HapII	CCGG	3 cut(s)	113, 510, 561
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	238, 242, 248
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	5 cut(s)	68, 214, 386, 557, 568
HpaII	CCGG	3 cut(s)	113, 510, 561
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	6, 47, 130
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	245, 602
Hpy8I	GTNNAC	3 cut(s)	6, 47, 130
HpyAV	CCTTC	4 cut(s)	133, 374, 410, 572
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	3 cut(s)	6, 55, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 548
HpyF3I	CTNAG	2 cut(s)	184, 189
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	238, 242, 248
HspAI	GCGC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	37, 322, 354, 598
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	2 cut(s)	121, 256
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	59, 409
MalI	GATC	4 cut(s)	39, 324, 356, 600
MboI	GATC	4 cut(s)	37, 322, 354, 598
MboII	GAAGA	1 cut(s)	157
MfeI	CAATTG	2 cut(s)	50, 405
MhlI	GDGCHC	3 cut(s)	8, 489, 595
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	5 cut(s)	50, 159, 282, 290, 405
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	4, 568
MnlI	CCTC	5 cut(s)	409, 439, 464, 546, 584
Mox20I	TGGCCA	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	2 cut(s)	281, 619
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	3 cut(s)	113, 510, 561
MspR9I	CCNGG	3 cut(s)	125, 458, 562
MunI	CAATTG	2 cut(s)	50, 405
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	125, 458
MvnI	CGCG	2 cut(s)	225, 551
MwoI	GCNNNNNNNGC	2 cut(s)	266, 548
NciI	CCSGG	1 cut(s)	562
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	4 cut(s)	37, 322, 354, 598
NlaIII	CATG	3 cut(s)	238, 242, 248
NlaIV	GGNNCC	4 cut(s)	120, 508, 547, 592
NmuCI	GTSAC	2 cut(s)	59, 409
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	242
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	4 cut(s)	68, 214, 557, 568
PkrI	GCNGC	4 cut(s)	111, 271, 337, 520
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	123, 456
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	123, 456
PspN4I	GGNNCC	4 cut(s)	120, 508, 547, 592
PspPI	GGNCC	4 cut(s)	440, 507, 520, 581
PsrI	GAACNNNNNNTAC	2 cut(s)	417, 449
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	281, 619
SatI	GCNGC	4 cut(s)	110, 270, 336, 519
Sau3AI	GATC	4 cut(s)	37, 322, 354, 598
Sau96I	GGNCC	4 cut(s)	440, 507, 520, 581
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	125, 458, 562
SduI	GDGCHC	3 cut(s)	8, 489, 595
SetI	ASST	7 cut(s)	97, 129, 190, 199, 401, 462, 614
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	2 cut(s)	43, 168
SinI	GGWCC	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	5 cut(s)	50, 159, 282, 290, 405
SsiI	CCGC	5 cut(s)	107, 336, 518, 549, 565
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	123, 456, 560
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	576
TasI	AATT	5 cut(s)	50, 159, 282, 290, 405
TauI	GCSGC	2 cut(s)	338, 521
TfiI	GAWTC	4 cut(s)	68, 214, 557, 568
Tru1I	TTAA	2 cut(s)	281, 619
Tru9I	TTAA	2 cut(s)	281, 619
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	59, 409
TseI	GCWGC	2 cut(s)	109, 269
Tsp45I	GTSAC	2 cut(s)	59, 409
TspDTI	ATGAA	3 cut(s)	233, 393, 452
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	47
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	46, 129
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.