Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

19438478 .. 19440904

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG129100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCGGTGGACGGCATCATGACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCCACCGGTCGCCGGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGAGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACAAGTCAGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGTGAGAAACATTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGATTGGGTCTACAGACACTATTTGGAAGCAATGTTTGACAACCGAAGGGAGAGGGAAGAACTTCTAGAGGCTTTGGTCATCAGTGACGAGGATTTCACCGTGGCTGATTATCCACAGAGGGTGTATCTTTTGTGGGGAGCAAATGACAAGATCTTCGACATAGAATCTGCAAGCAACCTCAACAAGCAATTAGGCAACAACGCATCAGTCTATCATATAGAGAAAGCAGGTCACATTGTTCAAATGGAGCGACCATTCGTTTATAACAGCCAGCTCAAGAAATTTTTGGCTTCTTTGTCCGAAGATGTGCACCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

269

Amino Acids

30.62

Weight (kDa)

5.83

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	16 - 118	6.5e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	18 - 248	2e-14	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	165 - 248	3.3e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
Acc36I	ACCTGC	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	74, 299
AclWI	GGATC	2 cut(s)	159, 172
AcsI	RAATTY	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	141, 308
AfiI	CCNNNNNNNGG	4 cut(s)	193, 261, 316, 384
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	203, 358, 458, 731
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	235, 270, 304, 763
AluI	AGCT	4 cut(s)	235, 270, 304, 763
Alw21I	GWGCWC	2 cut(s)	254, 801
Alw44I	GTGCAC	2 cut(s)	250, 797
AlwI	GGATC	2 cut(s)	159, 172
AoxI	GGCC	1 cut(s)	324
ApaLI	GTGCAC	2 cut(s)	250, 797
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	770
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AsiGI	ACCGGT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	577
BaeGI	GKGCMC	2 cut(s)	254, 801
BamHI	GGATCC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	254, 801
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	3 cut(s)	35, 97, 116
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	707
BglII	AGATCT	1 cut(s)	639
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	15, 166
BmsI	GCATC	2 cut(s)	93, 701
BpuEI	CTTGAG	1 cut(s)	749
BsaAI	YACGTR	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	51, 219, 588
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 261, 316, 384
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	525
BseDI	CCNNGG	3 cut(s)	51, 219, 588
BseLI	CCNNNNNNNGG	4 cut(s)	193, 261, 316, 384
BseMI	GCAATG	1 cut(s)	525
BseSI	GKGCMC	2 cut(s)	254, 801
BseXI	GCAGC	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	326
BshTI	ACCGGT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	191
BsiHKAI	GWGCWC	2 cut(s)	254, 801
BsiSI	CCGG	3 cut(s)	187, 194, 378
BslI	CCNNNNNNNGG	4 cut(s)	193, 261, 316, 384
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	254, 801
Bsp143I	GATC	3 cut(s)	145, 164, 639
BspACI	CCGC	2 cut(s)	74, 299
BspANI	GGCC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	15, 166
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	2 cut(s)	159, 172
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	51, 219, 588
BssMI	GATC	3 cut(s)	145, 164, 639
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	68, 405, 589
BstACI	GRCGYC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	48, 661, 761
BstDSI	CCRYGG	2 cut(s)	51, 588
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	148, 167, 642
BstMBI	GATC	3 cut(s)	145, 164, 639
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	2 cut(s)	254, 801
BstSNI	TACGTA	1 cut(s)	139
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	164, 639
BstYI	RGATCY	2 cut(s)	164, 639
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	2 cut(s)	51, 588
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	3 cut(s)	48, 661, 761
CciI	TCATGA	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	186
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	140, 307
CspAI	ACCGGT	1 cut(s)	186
CviAII	CATG	3 cut(s)	88, 93, 280
CviQI	GTAC	2 cut(s)	140, 307
DpnI	GATC	3 cut(s)	147, 166, 641
DpnII	GATC	3 cut(s)	145, 164, 639
EciI	GGCGGA	1 cut(s)	314
Eco105I	TACGTA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	91, 96, 283
FaiI	YATR	9 cut(s)	89, 94, 273, 281, 350, 650, 705, 707, 753
FatI	CATG	3 cut(s)	87, 92, 279
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	3 cut(s)	187, 194, 378
HgaI	GACGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	3 cut(s)	91, 96, 283
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	428, 653
HpaII	CCGG	3 cut(s)	187, 194, 378
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	5 cut(s)	79, 136, 252, 499, 799
Hpy188I	TCNGA	2 cut(s)	412, 790
Hpy188III	TCNNGA	5 cut(s)	88, 425, 488, 554, 766
Hpy8I	GTNNAC	5 cut(s)	79, 136, 252, 499, 799
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	3 cut(s)	68, 405, 589
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	252, 659, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	3 cut(s)	91, 96, 283
Kzo9I	GATC	3 cut(s)	145, 164, 639
LmnI	GCTCC	4 cut(s)	301, 347, 626, 736
LpnPI	CCDG	9 cut(s)	60, 133, 200, 207, 391, 438, 501, 702, 773
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	93, 701
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	3 cut(s)	334, 572, 719
MalI	GATC	3 cut(s)	147, 166, 641
MboI	GATC	3 cut(s)	145, 164, 639
MboII	GAAGA	8 cut(s)	46, 53, 145, 148, 476, 557, 634, 803
MflI	RGATCY	2 cut(s)	164, 639
MhlI	GDGCHC	2 cut(s)	254, 801
MluCI	AATT	4 cut(s)	98, 459, 677, 770
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	3 cut(s)	187, 194, 378
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	3 cut(s)	145, 164, 639
NlaIII	CATG	3 cut(s)	91, 96, 283
NlaIV	GGNNCC	2 cut(s)	15, 166
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	334, 572, 719
OliI	CACNNNNGTG	1 cut(s)	257
PagI	TCATGA	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 135
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	653
PflFI	GACNNNGTC	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	15, 166
PsuI	RGATCY	2 cut(s)	164, 639
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	2 cut(s)	141, 308
RsaNI	GTAC	2 cut(s)	140, 307
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	145, 164, 639
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	254, 801
SetI	ASST	8 cut(s)	141, 237, 251, 272, 306, 669, 721, 765
SfaNI	GCATC	2 cut(s)	93, 701
SfcI	CTRYAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SnaBI	TACGTA	1 cut(s)	139
Sse9I	AATT	4 cut(s)	98, 459, 677, 770
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	2 cut(s)	74, 299
SspMI	CTAG	1 cut(s)	554
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	68, 405, 589
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	32, 41, 645
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	98, 459, 677, 770
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	3 cut(s)	334, 572, 719
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	3 cut(s)	334, 572, 719
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	188, 334
TspRI	CASTG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	431
VneI	GTGCAC	2 cut(s)	250, 797
XapI	RAATTY	1 cut(s)	770
XbaI	TCTAGA	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.