Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

19164327 .. 19169208

Gene Structure 4882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAAACATTTTTGCAATATACAAGCCCATCTTGCATGGACTAATGAAGCTGGCCGGGGTGAGACCCCAAACTCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCGGAGGACGGCATCATGACATGGCAATTCCAAGTCCTATCTCTTGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCCACCGGTCGCCGGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGCGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACGAGTCCGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGGCTCGGTCAAAGGAGTAAGAAACATTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGATTGGGTCTACAGACACTATTTGGAAGCAATGTTTGACAACCGAAGGGAGAGGGAAGAACTTCTAGAGGCTTTGGTCATCAGTGACGAGGATTTCACCGTGGCTAATTATCCACAGAGGGTGTATCTTTTGTGGGGAGCGAATGACAAGATCTTCGACATAGAATCTGCAAGCAACCTCAACAAGCAATTAGGCAACAACGCATCAGTCTATCATATAGAGAAAGCAGGTCACCTTGTTCAATTGGAGCGACCATTCGTTTATAACAGCCAGCTCAAGAAATTTTTGGCTTCTTTGTCCGAAGATGTGCACCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

302

Amino Acids

34.1

Weight (kDa)

6.09

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	49 - 281	1.1e-22	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	51 - 281	6.9e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	173, 398, 422
AclWI	GGATC	2 cut(s)	258, 271
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	869
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	240, 407
AfiI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	302, 457, 557, 830
AjnI	CCWGG	2 cut(s)	88, 523
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	52, 334, 369, 403, 862
AluI	AGCT	5 cut(s)	52, 334, 369, 403, 862
Alw21I	GWGCWC	2 cut(s)	353, 900
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	2 cut(s)	349, 896
AlwI	GGATC	2 cut(s)	258, 271
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	54, 423
ApaLI	GTGCAC	2 cut(s)	349, 896
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	869
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	648
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	73, 676, 812
BaeGI	GKGCMC	2 cut(s)	353, 900
BamHI	GGATCC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	353, 900
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	38, 388
BceAI	ACGGC	3 cut(s)	134, 196, 215
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	90, 525
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	77, 653
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	806
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	2 cut(s)	423, 564
BlsI	GCNGC	2 cut(s)	424, 565
Bme1390I	CCNGG	3 cut(s)	58, 90, 525
BmiI	GGNNCC	2 cut(s)	114, 265
BmrFI	CCNGG	3 cut(s)	58, 90, 525
BmsI	GCATC	2 cut(s)	192, 800
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	57, 150, 318, 687
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	90, 525
BseDI	CCNNGG	4 cut(s)	57, 150, 318, 687
BseLI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BseMI	GCAATG	1 cut(s)	624
BseSI	GKGCMC	2 cut(s)	353, 900
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	56, 425
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	2 cut(s)	353, 900
BsiSI	CCGG	4 cut(s)	57, 286, 293, 477
BslI	CCNNNNNNNGG	4 cut(s)	292, 360, 415, 483
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	56, 425
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	353, 900
Bsp143I	GATC	4 cut(s)	81, 244, 263, 738
BspACI	CCGC	3 cut(s)	173, 398, 422
BspANI	GGCC	2 cut(s)	56, 425
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	114, 265
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	2 cut(s)	258, 271
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	4 cut(s)	57, 150, 318, 687
BssMI	GATC	4 cut(s)	81, 244, 263, 738
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	90, 525
Bst4CI	ACNGT	4 cut(s)	97, 167, 504, 688
BstACI	GRCGYC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	54, 147, 760, 860
BstDSI	CCRYGG	2 cut(s)	150, 687
BstEII	GGTNACC	1 cut(s)	818
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	4 cut(s)	84, 247, 266, 741
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	4 cut(s)	81, 244, 263, 738
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 375
BstNI	CCWGG	2 cut(s)	90, 525
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	3 cut(s)	56, 88, 523
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	2 cut(s)	353, 900
BstSNI	TACGTA	1 cut(s)	238
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	2 cut(s)	263, 738
BstYI	RGATCY	2 cut(s)	263, 738
BsuRI	GGCC	2 cut(s)	56, 425
BtgI	CCRYGG	2 cut(s)	150, 687
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	4 cut(s)	54, 147, 760, 860
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	285
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	239, 406
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	4 cut(s)	38, 187, 192, 379
CviQI	GTAC	2 cut(s)	239, 406
DpnI	GATC	4 cut(s)	83, 246, 265, 740
DpnII	GATC	4 cut(s)	81, 244, 263, 738
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	413
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	818
EcoO65I	GGTNACC	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	88, 523
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	4 cut(s)	41, 190, 195, 382
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	4 cut(s)	37, 186, 191, 378
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	423, 564
Fsp4HI	GCNGC	2 cut(s)	423, 564
FspBI	CTAG	2 cut(s)	77, 653
GluI	GCNGC	2 cut(s)	423, 564
HaeIII	GGCC	2 cut(s)	56, 425
HapII	CCGG	4 cut(s)	57, 286, 293, 477
HgaI	GACGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	41, 190, 195, 382
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	461, 752
HpaII	CCGG	4 cut(s)	57, 286, 293, 477
HphI	GGTGA	3 cut(s)	73, 676, 812
Hpy166II	GTNNAC	4 cut(s)	235, 351, 598, 898
Hpy188I	TCNGA	2 cut(s)	511, 889
Hpy188III	TCNNGA	5 cut(s)	77, 187, 587, 653, 865
Hpy8I	GTNNAC	4 cut(s)	235, 351, 598, 898
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	4 cut(s)	97, 167, 504, 688
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	5 cut(s)	17, 37, 351, 758, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 375
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	41, 190, 195, 382
Kzo9I	GATC	4 cut(s)	81, 244, 263, 738
LmnI	GCTCC	4 cut(s)	400, 446, 725, 835
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	2 cut(s)	192, 800
MaeI	CTAG	2 cut(s)	77, 653
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	433, 671, 818
MalI	GATC	4 cut(s)	83, 246, 265, 740
MboI	GATC	4 cut(s)	81, 244, 263, 738
MboII	GAAGA	8 cut(s)	145, 152, 244, 247, 575, 656, 733, 902
MfeI	CAATTG	1 cut(s)	830
MflI	RGATCY	2 cut(s)	263, 738
MhlI	GDGCHC	2 cut(s)	353, 900
MluCI	AATT	6 cut(s)	197, 558, 694, 776, 830, 869
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	4 cut(s)	57, 286, 293, 477
MspR9I	CCNGG	3 cut(s)	58, 90, 525
MunI	CAATTG	1 cut(s)	830
MvaI	CCWGG	2 cut(s)	90, 525
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	34, 375
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	4 cut(s)	81, 244, 263, 738
NlaIII	CATG	4 cut(s)	41, 190, 195, 382
NlaIV	GGNNCC	2 cut(s)	114, 265
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	3 cut(s)	433, 671, 818
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 234
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	752
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	424, 565
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	88, 523
PspEI	GGTNACC	1 cut(s)	818
PspGI	CCWGG	2 cut(s)	88, 523
PspN4I	GGNNCC	2 cut(s)	114, 265
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	263, 738
RsaI	GTAC	2 cut(s)	240, 407
RsaNI	GTAC	2 cut(s)	239, 406
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	423, 564
Sau3AI	GATC	4 cut(s)	81, 244, 263, 738
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	3 cut(s)	58, 90, 525
SduI	GDGCHC	2 cut(s)	353, 900
SfaNI	GCATC	2 cut(s)	192, 800
SfcI	CTRYAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	6 cut(s)	197, 558, 694, 776, 830, 869
SsiI	CCGC	3 cut(s)	173, 398, 422
SspMI	CTAG	2 cut(s)	77, 653
StyD4I	CCNGG	3 cut(s)	56, 88, 523
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	4 cut(s)	97, 167, 504, 688
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	84, 131, 140, 744
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	6 cut(s)	197, 558, 694, 776, 830, 869
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	3 cut(s)	433, 671, 818
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	3 cut(s)	433, 671, 818
TspDTI	ATGAA	2 cut(s)	62, 116
TspGWI	ACGGA	3 cut(s)	287, 433, 454
TspRI	CASTG	1 cut(s)	676
VneI	GTGCAC	2 cut(s)	349, 896
XapI	RAATTY	1 cut(s)	869
XbaI	TCTAGA	2 cut(s)	76, 652
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	77, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.