Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

20203139 .. 20204834

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCAGTGGACGGCATCATAACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTATACGTACCCGATCTCATCTTCTTCGGTGAATCCATTACGGATAAGCCCGACCGGTCGCCTGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGAGGCCTTTGTTGTGACTTCCACCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGTGAGAAACCTTTTTGAAATTGCTGCCTACAAGTTTCCTTATCTTCCTGATTGGGTCTACAGACACTATTTGGAAGCAATGTTTGACAACCAAAGGGAGAGGGAAGAACTTCTAAAGGCTTTGGTTATCAGTGACGAGGATTTCACTGTGGCTAATTATCCACAGCATTCCAGAGTGCACCTTCCACCATTGTTATCTCATCCTAACAACCCCCATTCCATTTACAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

224

Amino Acids

25.53

Weight (kDa)

6.07

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	16 - 120	3.2e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	18 - 176	6.3e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	135, 498
AciI	CCGC	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	141, 308
AfiI	CCNNNNNNNGG	3 cut(s)	261, 316, 384
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	203, 358, 458
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	235, 270, 304
AluI	AGCT	3 cut(s)	235, 270, 304
Alw21I	GWGCWC	2 cut(s)	254, 621
Alw44I	GTGCAC	2 cut(s)	250, 617
AoxI	GGCC	1 cut(s)	324
ApaLI	GTGCAC	2 cut(s)	250, 617
ApeKI	GCWGC	1 cut(s)	464
AsiGI	ACCGGT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	254, 621
Bbv12I	GWGCWC	2 cut(s)	254, 621
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	3 cut(s)	35, 97, 116
BfmI	CTRYAG	1 cut(s)	499
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	15
BmsI	GCATC	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	51, 219
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 316, 384
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	51, 219
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	3 cut(s)	261, 316, 384
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	186
BseSI	GKGCMC	2 cut(s)	254, 621
BseXI	GCAGC	1 cut(s)	451
Bsh1285I	CGRYCG	2 cut(s)	187, 191
BshFI	GGCC	1 cut(s)	326
BshTI	ACCGGT	1 cut(s)	186
BsiEI	CGRYCG	2 cut(s)	187, 191
BsiHKAI	GWGCWC	2 cut(s)	254, 621
BsiSI	CCGG	2 cut(s)	187, 378
BslI	CCNNNNNNNGG	3 cut(s)	261, 316, 384
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	254, 621
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	51, 219
BssMI	GATC	1 cut(s)	145
BssNAI	GTATAC	1 cut(s)	136
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	136
Bst4CI	ACNGT	4 cut(s)	68, 346, 405, 589
BstACI	GRCGYC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMCI	CGRYCG	2 cut(s)	187, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	2 cut(s)	254, 621
BstSNI	TACGTA	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	3 cut(s)	81, 577, 585
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	186
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	140, 307
CspAI	ACCGGT	1 cut(s)	186
CviAII	CATG	2 cut(s)	93, 280
CviQI	GTAC	2 cut(s)	140, 307
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	314
Eco105I	TACGTA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	96, 283
FaiI	YATR	6 cut(s)	89, 94, 136, 273, 281, 350
FatI	CATG	2 cut(s)	92, 279
FblI	GTMKAC	2 cut(s)	135, 498
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	2 cut(s)	187, 378
HgaI	GACGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	96, 283
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	164, 428
HpaII	CCGG	2 cut(s)	187, 378
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	5 cut(s)	79, 136, 252, 499, 619
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	425, 488, 612
Hpy8I	GTNNAC	5 cut(s)	79, 136, 252, 499, 619
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	4 cut(s)	68, 346, 405, 589
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	252, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	96, 283
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	60, 133, 200, 207, 391, 438, 501, 625
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	334, 572
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	6 cut(s)	46, 53, 145, 148, 476, 557
MhlI	GDGCHC	2 cut(s)	254, 621
MluCI	AATT	4 cut(s)	98, 459, 595, 667
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	222, 240, 269, 316, 381, 534, 571
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	257, 347
MspI	CCGG	2 cut(s)	187, 378
Mva1269I	GAATGC	1 cut(s)	607
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	96, 283
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	334, 572
OliI	CACNNNNGTG	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 135
PctI	GAATGC	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	2 cut(s)	141, 308
RsaNI	GTAC	2 cut(s)	140, 307
RseI	CAYNNNNRTG	2 cut(s)	257, 347
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	254, 621
SetI	ASST	7 cut(s)	141, 237, 251, 272, 306, 453, 624
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	2 cut(s)	257, 347
SnaBI	TACGTA	1 cut(s)	139
Sse9I	AATT	4 cut(s)	98, 459, 595, 667
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	68, 346, 405, 589
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	32, 41
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	98, 459, 595, 667
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	3 cut(s)	81, 577, 592
TseFI	GTSAC	2 cut(s)	334, 572
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	2 cut(s)	334, 572
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	188, 355
TspRI	CASTG	3 cut(s)	81, 577, 592
Tth111I	GACNNNGTC	1 cut(s)	431
VneI	GTGCAC	2 cut(s)	250, 617
XmiI	GTMKAC	2 cut(s)	135, 498
XmnI	GAANNNNTTC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.