Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

15443655 .. 15444230

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGCTGGCCGGGGTGAGACCCCAAACCCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCAGTGGACGGCATCATAACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCGACCGGTCGCCGGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGATGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTGCCCCGATTTGGTTGAGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCGGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGTGAGAAACCTTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGGGTCTACAGACACTATTTGGAAGTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

191

Amino Acids

21.13

Weight (kDa)

8.31

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	34 - 139	6.7e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	36 - 159	1.3e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	353, 431
AclWI	GGATC	2 cut(s)	213, 226
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	247, 315, 370
AgeI	ACCGGT	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	257, 412, 512
AjnI	CCWGG	2 cut(s)	43, 541
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	7, 289, 324, 358
AluI	AGCT	4 cut(s)	7, 289, 324, 358
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	213, 226
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	9, 378
ApaLI	GTGCAC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	518
AsiGI	ACCGGT	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	28
BaeGI	GKGCMC	2 cut(s)	308, 365
BamHI	GGATCC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	2 cut(s)	289, 343
BceAI	ACGGC	3 cut(s)	89, 151, 170
BciT130I	CCWGG	2 cut(s)	45, 543
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	3 cut(s)	13, 45, 543
BmiI	GGNNCC	2 cut(s)	69, 220
BmrFI	CCNGG	3 cut(s)	13, 45, 543
BmsI	GCATC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	4 cut(s)	12, 105, 273, 542
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 315, 370
Bse118I	RCCGGY	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	45, 543
BseDI	CCNNGG	4 cut(s)	12, 105, 273, 542
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	247, 315, 370
BseSI	GKGCMC	2 cut(s)	308, 365
BseXI	GCAGC	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	431
Bsh1285I	CGRYCG	2 cut(s)	241, 245
BshFI	GGCC	2 cut(s)	11, 380
BshTI	ACCGGT	1 cut(s)	240
BsiEI	CGRYCG	2 cut(s)	241, 245
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	12, 241, 248
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	247, 315, 370
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	11, 380
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	308, 365
Bsp143I	GATC	3 cut(s)	36, 199, 218
BspACI	CCGC	2 cut(s)	353, 431
BspANI	GGCC	2 cut(s)	11, 380
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	69, 220
BspPI	GGATC	2 cut(s)	213, 226
BspTNI	GGTCTC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	4 cut(s)	12, 105, 273, 542
BssMI	GATC	3 cut(s)	36, 199, 218
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	45, 543
Bst4CI	ACNGT	3 cut(s)	52, 122, 459
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	9, 102
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	3 cut(s)	39, 202, 221
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	36, 199, 218
BstMCI	CGRYCG	2 cut(s)	241, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	2 cut(s)	45, 543
BstSCI	CCNGG	3 cut(s)	11, 43, 541
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	2 cut(s)	308, 365
BstSNI	TACGTA	1 cut(s)	193
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	11, 380
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	9, 102
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	240
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	194
CspAI	ACCGGT	1 cut(s)	240
CviAII	CATG	2 cut(s)	147, 334
CviQI	GTAC	1 cut(s)	194
DpnI	GATC	3 cut(s)	38, 201, 220
DpnII	GATC	3 cut(s)	36, 199, 218
EaeI	YGGCCR	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	368
Eco105I	TACGTA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	43, 541
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	150, 337
FaiI	YATR	7 cut(s)	143, 148, 327, 335, 404, 570, 574
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	146, 333
FauI	CCCGC	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	11, 380
HapII	CCGG	3 cut(s)	12, 241, 248
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	150, 337
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	1 cut(s)	482
HpaII	CCGG	3 cut(s)	12, 241, 248
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	4 cut(s)	133, 190, 306, 549
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	4 cut(s)	133, 190, 306, 549
Hpy99I	CGWCG	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	52, 122, 459
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	150, 337
Kzo9I	GATC	3 cut(s)	36, 199, 218
LmnI	GCTCC	2 cut(s)	355, 401
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	38, 201, 220
MboI	GATC	3 cut(s)	36, 199, 218
MboII	GAAGA	5 cut(s)	100, 107, 199, 202, 530
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	308, 365
MluCI	AATT	2 cut(s)	152, 513
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	276, 294, 323, 370, 435, 543
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	3 cut(s)	12, 241, 248
MspR9I	CCNGG	3 cut(s)	13, 45, 543
MvaI	CCWGG	2 cut(s)	45, 543
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	330
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	36, 199, 218
NlaIII	CATG	2 cut(s)	150, 337
NlaIV	GGNNCC	2 cut(s)	69, 220
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 189
PflFI	GACNNNGTC	1 cut(s)	485
PinAI	ACCGGT	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	43, 541
PspGI	CCWGG	2 cut(s)	43, 541
PspN4I	GGNNCC	2 cut(s)	69, 220
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	36, 199, 218
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	13, 45, 543
SduI	GDGCHC	2 cut(s)	308, 365
SetI	ASST	7 cut(s)	9, 195, 291, 305, 326, 360, 507
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	311
SnaBI	TACGTA	1 cut(s)	193
Sse9I	AATT	2 cut(s)	152, 513
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	2 cut(s)	353, 431
SspMI	CTAG	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	11, 43, 541
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	52, 122, 459
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	39, 86, 95
TaqII	GACCGA	1 cut(s)	475
TasI	AATT	2 cut(s)	152, 513
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	17, 71
TspGWI	ACGGA	3 cut(s)	242, 388, 409
TspRI	CASTG	1 cut(s)	135
Tth111I	GACNNNGTC	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.