Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003460

Physical Location & Seq

Genomic Coordinates Forward (+)

20353692 .. 20374129

Gene Structure 20438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG131100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGAAACATTTTTGCTATATACAGGCCCATCTTGCATGGACTAATGAAGCTGGCCGGGGTGAGACCCCAAACCCTAGAGATCGAACCAGGAACTGTAATGAACTTCTGGGTTCCTACTGAAACCAACTCGAAGAAATCGAAGCCAGCCGTGGTCTTTCTTCACGGTTTCGCAGTGGACGGCATCATAACATGGCAATTCCAAGTCCTATCTCTCGCCAGATACTACGCCGTTTACGTACCCGATCTCATCTTCTTCGGTGGATCCATTACGGATAAGCCCGACCGGTCGCCTGAGTTTCAAGCCGAGTGCGTAGCCAAGGGTTTGAGGAAGCTTGGGGTGGAGAGGTGCACCCTTGTGGGGTTGAGCTATGGAGGCATGGTGGGGTTTAAGATGGCGGAGCTGTACCCCGATTTGGTTGAGGCCTTTGTTGTGACTTGCTCCGTTATGGCTTTGAACAAGTCCGTTAGCGACGCCGGACTTGGGAGGATTGGGTTCTCACGGTGGTCGGATTACTTGCTTCCTGACTCGGTCAAAGGAGTGAGAAACCTTTTTGAAATTGCTGCCTACAAGTTTCCTCATCTTCCTGATTGGGTCTACAGACACTATTTGGAAGCAATGTTTGACAACCGAAGGGAGAGGGAAGAACTTCTAGAGGCTTTGGTCATCAGTGACGAGGATTTCACCGTGGCTAATTATCCACAGAGGGTGTATCTTTTGTGGGGAGCGAATGACAAGATCTTCGACATAGAATCTGCAAGCAACCTCAACAAGGAAAAATACAATAAAGACAGTGATAATAGGAGCTCATCAAGTGATGATCACAATGCTCTGAAACCTCGACAGAATGTGCTTCACATCATCAAGAACAATCCACTCGATGCTCAAAACCTCTGTGCGATCATGTCTGATAAGGAAGAATCCATCCCCTGGCCTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

314

Amino Acids

35.53

Weight (kDa)

5.75

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	49 - 258	1.5e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	51 - 246	1.4e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003460)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08950 FvH4_4g26240 FvH4_4g26240
malus_domestica	MD05G1065200.v1.1 MD10G1074900.v1.1
prunus_persica	Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G095900_v2.0.a1 Prupe.8G096000_v2.0.a1 Prupe.8G096000_v2.0.a1
pyrus_communis	pycom05g05650
rosa_chinensis	RchiOBHm_Chr6g0264071 RchiOBHm_Chr6g0264591
rosa_laevigata	RLG00000014242 RLG00000025226 RLG00000030776
rosa_multiflora	Rmu_sc0000578.1_g000025 Rmu_sc0005111.1_g000001 Rmu_sc0006339.1_g000003
rosa_roxburghii	Rroxscaffold_175G00431960 Rroxscaffold_7G00203310
rosa_samantha	Rh6AG129100 Rh6AG133500 Rh6BG124700 Rh6BG131100 Rh6CG123400 Rh6CG129200 Rh6CG129600 Rh6DG110400 Rh6DG116400 Rh6DG116600
rosa_wichuraiana	Rw6G011150 Rw6G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	930
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	2 cut(s)	258, 271
AcoI	YGGCCR	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	240, 407
AfiI	CCNNNNNNNGG	5 cut(s)	360, 415, 483, 772, 930
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	302, 457, 557, 939
AjnI	CCWGG	2 cut(s)	88, 929
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	52, 334, 369, 403, 807
AluI	AGCT	5 cut(s)	52, 334, 369, 403, 807
Alw21I	GWGCWC	2 cut(s)	353, 809
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	258, 271
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	4 cut(s)	26, 54, 423, 932
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	73, 676
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	809
Bbv12I	GWGCWC	2 cut(s)	353, 809
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	3 cut(s)	38, 388, 932
BceAI	ACGGC	3 cut(s)	134, 196, 215
BciT130I	CCWGG	2 cut(s)	90, 931
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	77, 653
BfmI	CTRYAG	1 cut(s)	598
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	3 cut(s)	58, 90, 931
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	114, 265
BmrFI	CCNGG	3 cut(s)	58, 90, 931
BmsI	GCATC	2 cut(s)	192, 871
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	5 cut(s)	57, 150, 318, 687, 929
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	5 cut(s)	360, 415, 483, 772, 930
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	90, 931
BseDI	CCNNGG	5 cut(s)	57, 150, 318, 687, 929
BseGI	GGATG	1 cut(s)	924
BseLI	CCNNNNNNNGG	5 cut(s)	360, 415, 483, 772, 930
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	550
Bsh1285I	CGRYCG	2 cut(s)	286, 290
BshFI	GGCC	4 cut(s)	28, 56, 425, 934
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	2 cut(s)	286, 290
BsiHKAI	GWGCWC	2 cut(s)	353, 809
BsiSI	CCGG	3 cut(s)	57, 286, 477
BslI	CCNNNNNNNGG	5 cut(s)	360, 415, 483, 772, 930
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	4 cut(s)	28, 56, 425, 934
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	353, 809
Bsp143I	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	4 cut(s)	28, 56, 425, 934
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	114, 265
BspPI	GGATC	2 cut(s)	258, 271
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	5 cut(s)	57, 150, 318, 687, 929
BssMI	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	90, 931
Bst4CI	ACNGT	5 cut(s)	97, 167, 504, 688, 794
BstACI	GRCGYC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	54, 147, 760
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	150, 687
BstENI	CCTNNNNNAGG	1 cut(s)	770
BstF5I	GGATG	1 cut(s)	924
BstKTI	GATC	6 cut(s)	84, 247, 266, 741, 823, 903
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
BstMCI	CGRYCG	2 cut(s)	286, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 375
BstNI	CCWGG	2 cut(s)	90, 931
BstSCI	CCNGG	3 cut(s)	56, 88, 929
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	353
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	2 cut(s)	263, 738
BstYI	RGATCY	2 cut(s)	263, 738
BsuRI	GGCC	4 cut(s)	28, 56, 425, 934
BtgI	CCRYGG	2 cut(s)	150, 687
BtsCI	GGATG	1 cut(s)	924
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	180, 676, 799
Cac8I	GCNNGC	3 cut(s)	54, 147, 760
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	239, 406
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	4 cut(s)	38, 192, 379, 904
CviQI	GTAC	2 cut(s)	239, 406
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	6 cut(s)	83, 246, 265, 740, 822, 902
DpnII	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	807
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	809
Eco31I	GGTCTC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	807
EcoICRI	GAGCTC	1 cut(s)	807
EcoNI	CCTNNNNNAGG	1 cut(s)	770
EcoRII	CCWGG	2 cut(s)	88, 929
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	4 cut(s)	41, 195, 382, 907
FatI	CATG	4 cut(s)	37, 191, 378, 903
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	77, 653
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	28, 56, 425, 934
HapII	CCGG	3 cut(s)	57, 286, 477
HgaI	GACGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	41, 195, 382, 907
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	3 cut(s)	527, 752, 920
HpaII	CCGG	3 cut(s)	57, 286, 477
HphI	GGTGA	2 cut(s)	73, 676
Hpy166II	GTNNAC	4 cut(s)	178, 235, 351, 598
Hpy188I	TCNGA	3 cut(s)	511, 834, 910
Hpy188III	TCNNGA	4 cut(s)	524, 587, 653, 865
Hpy8I	GTNNAC	4 cut(s)	178, 235, 351, 598
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	627, 945
HpyCH4III	ACNGT	5 cut(s)	97, 167, 504, 688, 794
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	37, 351, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 375
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	41, 195, 382, 907
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
LmnI	GCTCC	4 cut(s)	400, 446, 725, 804
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	2 cut(s)	192, 871
MaeI	CTAG	2 cut(s)	77, 653
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	433, 671
MalI	GATC	6 cut(s)	83, 246, 265, 740, 822, 902
MboI	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
MboII	GAAGA	8 cut(s)	145, 152, 244, 247, 575, 656, 733, 929
MflI	RGATCY	2 cut(s)	263, 738
MhlI	GDGCHC	2 cut(s)	353, 809
MluCI	AATT	4 cut(s)	197, 558, 694, 940
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	2 cut(s)	390, 943
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	3 cut(s)	57, 286, 477
MspR9I	CCNGG	3 cut(s)	58, 90, 931
MvaI	CCWGG	2 cut(s)	90, 931
MwoI	GCNNNNNNNGC	2 cut(s)	34, 375
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
NlaIII	CATG	4 cut(s)	41, 195, 382, 907
NlaIV	GGNNCC	2 cut(s)	114, 265
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	433, 671
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 234
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	752, 920
PflFI	GACNNNGTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	930
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Ppu21I	YACGTR	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	809
Psp6I	CCWGG	2 cut(s)	88, 929
PspGI	CCWGG	2 cut(s)	88, 929
PspN4I	GGNNCC	2 cut(s)	114, 265
PspPI	GGNCC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	263, 738
PsyI	GACNNNGTC	1 cut(s)	530
RsaI	GTAC	2 cut(s)	240, 407
RsaNI	GTAC	2 cut(s)	239, 406
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	809
SaqAI	TTAA	2 cut(s)	390, 943
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	6 cut(s)	81, 244, 263, 738, 820, 900
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	58, 90, 931
SduI	GDGCHC	2 cut(s)	353, 809
SfaNI	GCATC	2 cut(s)	192, 871
SfcI	CTRYAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	356
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	4 cut(s)	197, 558, 694, 940
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	77, 653
SstI	GAGCTC	1 cut(s)	809
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	56, 88, 929
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	5 cut(s)	97, 167, 504, 688, 794
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	6 cut(s)	84, 131, 140, 744, 841, 879
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	4 cut(s)	197, 558, 694, 940
TfiI	GAWTC	2 cut(s)	752, 920
Tru1I	TTAA	2 cut(s)	390, 943
Tru9I	TTAA	2 cut(s)	390, 943
TscAI	CASTG	3 cut(s)	180, 676, 799
TseFI	GTSAC	2 cut(s)	433, 671
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	433, 671
TspDTI	ATGAA	2 cut(s)	62, 116
TspGWI	ACGGA	3 cut(s)	287, 433, 454
TspRI	CASTG	3 cut(s)	180, 676, 799
Tth111I	GACNNNGTC	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	930
VneI	GTGCAC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	770
XbaI	TCTAGA	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	77, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.