Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

27916696 .. 27917115

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26582.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGATCGCTCCTAGTTCGTACTACACCAACGTGAAGAGGTACTGGAGGAGGAGAAAGTACCAAAAGCTGAGCGTCGACAACAAGAAGAGGATGAGAGTTCAAAGGCTCGGTGGAGGCCCTAATGGGACTAGTCCTCCTAGGCGGTTTTTCAAGATCAGAAAGCTTCGGTTCCTCAAGTTCGTTACATCCCCGATAAACCTCTTGGCTAAGATCCATGGTGCTTATGTTGACATGATGGTAAAGATGGCCGGAAACGTCGGCGGCGCTAGAAGGATAGCAGGAGGGTCAAAGAAGGTGGCTAAATCGCAGGATCAGATTGCTGTGGCGGATACTTGCGGTGAGCAAGCCGTGGACACTAGACTGGTTTTGGAGATTTACAAGAGATTGGCTGCTTCTCGCCAATTATCTGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.71

Weight (kDa)

10.91

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	4 cut(s)	145, 264, 329, 339
AclWI	GGATC	2 cut(s)	208, 321
AcoI	YGGCCR	1 cut(s)	249
AfaI	GTAC	3 cut(s)	23, 44, 62
AgsI	TTSAA	2 cut(s)	104, 154
AhlI	ACTAGT	1 cut(s)	131
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	70, 166
AluI	AGCT	2 cut(s)	70, 166
AlwI	GGATC	2 cut(s)	208, 321
AoxI	GGCC	2 cut(s)	118, 249
ApeKI	GCWGC	1 cut(s)	392
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	232, 241
BceAI	ACGGC	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	325
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	5 cut(s)	15, 132, 141, 270, 360
BfoI	RGCGCY	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	265, 393
BlnI	CCTAGG	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	2 cut(s)	266, 394
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	140, 217, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	2 cut(s)	50, 369
BseDI	CCNNGG	3 cut(s)	140, 217, 351
BseGI	GGATG	2 cut(s)	99, 188
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	50, 369
BseRI	GAGGAG	2 cut(s)	64, 67
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	120, 251
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	120, 251
Bsp143I	GATC	4 cut(s)	6, 156, 213, 313
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	4 cut(s)	145, 264, 329, 339
BspANI	GGCC	2 cut(s)	120, 251
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	208, 321
BsrI	ACTGG	2 cut(s)	50, 369
BssECI	CCNNGG	3 cut(s)	140, 217, 351
BssMI	GATC	4 cut(s)	6, 156, 213, 313
BssT1I	CCWWGG	2 cut(s)	140, 217
Bst6I	CTCTTC	2 cut(s)	32, 83
BstC8I	GCNNGC	2 cut(s)	348, 415
BstDEI	CTNAG	2 cut(s)	71, 210
BstDSI	CCRYGG	2 cut(s)	217, 351
BstF5I	GGATG	2 cut(s)	99, 188
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	4 cut(s)	9, 159, 216, 316
BstMBI	GATC	4 cut(s)	6, 156, 213, 313
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	120, 251
BtgI	CCRYGG	2 cut(s)	217, 351
BtsCI	GGATG	2 cut(s)	99, 188
Cac8I	GCNNGC	2 cut(s)	348, 415
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	22, 43, 61
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	2 cut(s)	218, 235
CviJI	RGCY	9 cut(s)	70, 109, 120, 166, 209, 251, 302, 350, 392
CviKI_1	RGCY	9 cut(s)	70, 109, 120, 166, 209, 251, 302, 350, 392
CviQI	GTAC	3 cut(s)	22, 43, 61
DdeI	CTNAG	2 cut(s)	71, 210
DpnI	GATC	4 cut(s)	8, 158, 215, 315
DpnII	GATC	4 cut(s)	6, 156, 213, 313
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	32, 83
EarI	CTCTTC	2 cut(s)	32, 83
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	140, 217
EcoO109I	RGGNCCY	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	140, 217
ErhI	CCWWGG	2 cut(s)	140, 217
FaeI	CATG	2 cut(s)	221, 238
FaiI	YATR	3 cut(s)	219, 228, 236
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	217, 234
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	265, 393
FokI	GGATG	2 cut(s)	106, 175
Fsp4HI	GCNGC	2 cut(s)	265, 393
FspBI	CTAG	5 cut(s)	15, 132, 141, 270, 360
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	2 cut(s)	265, 393
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	120, 251
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	221, 238
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	2 cut(s)	79, 232
HindII	GTYRAC	2 cut(s)	79, 232
HindIII	AAGCTT	1 cut(s)	164
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	79, 232, 355
Hpy188I	TCNGA	2 cut(s)	161, 318
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	3 cut(s)	79, 232, 355
Hpy99I	CGWCG	2 cut(s)	80, 263
HpyAV	CCTTC	2 cut(s)	267, 289
HpyCH4IV	ACGT	2 cut(s)	33, 258
HpyF3I	CTNAG	2 cut(s)	71, 210
HpySE526I	ACGT	2 cut(s)	33, 258
Hsp92II	CATG	2 cut(s)	221, 238
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	6, 156, 213, 313
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	31, 265, 267, 296, 350
Lsp1109I	GCAGC	1 cut(s)	379
MaeI	CTAG	5 cut(s)	15, 132, 141, 270, 360
MaeII	ACGT	2 cut(s)	33, 258
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	4 cut(s)	8, 158, 215, 315
MboI	GATC	4 cut(s)	6, 156, 213, 313
MboII	GAAGA	2 cut(s)	49, 100
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	1 cut(s)	404
MnlI	CCTC	9 cut(s)	33, 42, 45, 84, 110, 147, 185, 212, 278
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	6, 156, 213, 313
NlaIII	CATG	2 cut(s)	221, 238
NlaIV	GGNNCC	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	266, 394
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	3 cut(s)	23, 44, 62
RsaNI	GTAC	3 cut(s)	22, 43, 61
RseI	CAYNNNNRTG	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	265, 393
Sau3AI	GATC	4 cut(s)	6, 156, 213, 313
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	7 cut(s)	36, 44, 72, 168, 204, 261, 300
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	4 cut(s)	145, 264, 329, 339
SspMI	CTAG	5 cut(s)	15, 132, 141, 270, 360
StyI	CCWWGG	2 cut(s)	140, 217
TaiI	ACGT	2 cut(s)	36, 261
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	404
TauI	GCSGC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	392
XmaJI	CCTAGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	5 cut(s)	15, 132, 141, 270, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.