Prupe.1G317600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001685
Physical Location & Seq
Forward (+)
30579219 .. 30579941
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G317600.1

Sequence Viewer

Length: 408 bp
ATGGAGATTGCTCCCGTTGCATACTACGACAACTTGAAGAGGTACTGGAGAAGGAGAAGGTACCAGAGGCTCAATGGTGACACCAAGAAGAAGATGAGGGTCACAAGGCTTGGCGGAGCCAAAACTACCAGAAGGATTTGGAAGCTCAGAAGCGCCATGCCAAAGCTCAGGCTGATGAAGTTTGTCTCCCCACTTAAGCTCTTGACAAAGTTCCACGATGCTTACGTTGACATGATGTATCGGATGGCCGGCAACGCTGCCAGTATCGGAGGGGTTTCGGGGAAGAAGGTTGCGAAAGCTCAAGACCAGATTTCAATTGCTTCATGTGGGGAGGAAGTTGATGGTAGATTGGTTTTGGAAATATACAAGAGATTGGCTGCTTCTCGCCAATTATTGATTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.63

Weight (kDa)

10.48

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 246
AfaI GTAC 2 cut(s) 44, 62
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 2 cut(s) 37, 315
AluBI AGCT 4 cut(s) 145, 166, 199, 299
AluI AGCT 4 cut(s) 145, 166, 199, 299
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 257, 377
Asp718I GGTACC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 244, 364
BccI CCATC 2 cut(s) 238, 335
BcoDI GTCTC 1 cut(s) 190
BfoI RGCGCY 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 2 cut(s) 258, 378
BlsI GCNGC 2 cut(s) 259, 379
BmiI GGNNCC 2 cut(s) 62, 118
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 50, 261
BseGI GGATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 160, 181
BseNI ACTGG 2 cut(s) 50, 261
BseXI GCAGC 2 cut(s) 244, 364
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 1 cut(s) 248
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 159, 180
BspLI GGNNCC 2 cut(s) 62, 118
BspT107I GGYRCC 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 50, 261
BssAI RCCGGY 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 146, 167
BstF5I GGATG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 17, 254
BstV1I GCAGC 2 cut(s) 244, 364
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 248
Csp6I GTAC 2 cut(s) 43, 61
CviAII CATG 3 cut(s) 157, 232, 324
CviQI GTAC 2 cut(s) 43, 61
DdeI CTNAG 2 cut(s) 146, 167
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 129
FaeI CATG 3 cut(s) 160, 235, 327
FaiI YATR 5 cut(s) 22, 158, 233, 325, 364
FatI CATG 3 cut(s) 156, 231, 323
Fnu4HI GCNGC 2 cut(s) 258, 378
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 258, 378
GlaI GCGC 1 cut(s) 154
GluI GCNGC 2 cut(s) 258, 378
GsuI CTGGAG 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 155
Hin1II CATG 3 cut(s) 160, 235, 327
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 149, 243, 269
Hpy188III TCNNGA 2 cut(s) 202, 302
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 45, 51, 126, 280
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 254
HpyF3I CTNAG 2 cut(s) 146, 167
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 160, 235, 327
HspAI GCGC 1 cut(s) 153
KpnI GGTACC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 16, 116
LpnPI CCDG 7 cut(s) 31, 77, 142, 154, 262, 274, 320
Lsp1109I GCAGC 2 cut(s) 244, 364
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 77, 100
MboII GAAGA 4 cut(s) 49, 100, 103, 295
MfeI CAATTG 1 cut(s) 315
MluCI AATT 2 cut(s) 315, 389
MnlI CCTC 5 cut(s) 33, 60, 90, 263, 325
MroNI GCCGGC 1 cut(s) 248
MseI TTAA 1 cut(s) 195
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 17, 254
NaeI GCCGGC 1 cut(s) 250
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 3 cut(s) 160, 235, 327
NlaIV GGNNCC 2 cut(s) 62, 118
NmuCI GTSAC 2 cut(s) 77, 100
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 259, 379
PspN4I GGNNCC 2 cut(s) 62, 118
RsaI GTAC 2 cut(s) 44, 62
RsaNI GTAC 2 cut(s) 43, 61
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 258, 378
SetI ASST 8 cut(s) 44, 62, 147, 168, 201, 228, 291, 301
SfaNI GCATC 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 194, 300
SmoI CTYRAG 2 cut(s) 194, 300
Sse9I AATT 2 cut(s) 315, 389
SsiI CCGC 1 cut(s) 114
TaiI ACGT 1 cut(s) 228
TasI AATT 2 cut(s) 315, 389
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 2 cut(s) 77, 100
TseI GCWGC 2 cut(s) 257, 377
Tsp45I GTSAC 2 cut(s) 77, 100
TspDTI ATGAA 2 cut(s) 191, 312
Vha464I CTTAAG 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.