Rh4AG330900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001685
Physical Location & Seq
Reverse (-)
64110605 .. 64111030
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG330900.1

Sequence Viewer

Length: 426 bp
ATGGAGATTGTTCCCACTACATGCTACGAAAACTTGAAGAGGTACTGGAGAAGGAGAATGTACCAAAGACTGTATGGAGACTGCAGCAAGAGGAAGATGAGGGTTGCAAGGCTCGGTGGTGGAGCTAATGGGAGTACTAGTCCTACTCGGTTTTTCAAGATCAGAAAGCTTCGATTGATCAAGTTTGTTTCGCCGATAAAGCTCTTCGCCAAGTTTCATGGGGCTTATGTTGACATGATGGTTCGCATGGCAGGCAATGTTGGTGGAGCCAGAAGGGTTGCAGGAGGATCAAAGAAGGTGGCAAAAGCAGAAGATCAGATTGTTTCAGTGGCGGCTTCTTGTTATGAGGAAGCCGTTGACGCTAGATTGGTTTTGGAGATTTATAAGAGGTTGGCAGCTTCTCGCCAATTAGCTGCCTACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.02

Weight (kDa)

10.54

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 295
AfaI GTAC 3 cut(s) 44, 62, 136
AgsI TTSAA 2 cut(s) 37, 157
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 5 cut(s) 125, 169, 202, 398, 413
AluI AGCT 5 cut(s) 125, 169, 202, 398, 413
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 3 cut(s) 84, 395, 413
BbvI GCAGC 3 cut(s) 96, 400, 407
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 338
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 72
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 2 cut(s) 138, 363
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 4 cut(s) 85, 333, 396, 414
BlsI GCNGC 4 cut(s) 86, 334, 397, 415
BmcAI AGTACT 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 96, 400, 407
BsmAI GTCTC 1 cut(s) 72
Bsp143I GATC 4 cut(s) 159, 177, 287, 313
BspACI CCGC 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 86
BspPI GGATC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 1 cut(s) 50
BssMI GATC 4 cut(s) 159, 177, 287, 313
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 2 cut(s) 32, 209
BstC8I GCNNGC 1 cut(s) 253
BstKTI GATC 4 cut(s) 162, 180, 290, 316
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 4 cut(s) 159, 177, 287, 313
BstMWI GCNNNNNNNGC 3 cut(s) 199, 252, 359
BstNSI RCATGY 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 96, 400, 407
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 253
CseI GACGC 1 cut(s) 368
Csp6I GTAC 3 cut(s) 43, 61, 135
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 279, 314
CviAII CATG 4 cut(s) 21, 218, 235, 247
CviQI GTAC 3 cut(s) 43, 61, 135
DpnI GATC 4 cut(s) 161, 179, 289, 315
DpnII GATC 4 cut(s) 159, 177, 287, 313
Eam1104I CTCTTC 2 cut(s) 32, 209
EarI CTCTTC 2 cut(s) 32, 209
FaeI CATG 4 cut(s) 24, 221, 238, 250
FaiI YATR 8 cut(s) 22, 75, 219, 228, 236, 248, 345, 384
FatI CATG 4 cut(s) 20, 217, 234, 246
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 85, 333, 396, 414
Fsp4HI GCNGC 4 cut(s) 85, 333, 396, 414
FspBI CTAG 2 cut(s) 138, 363
GluI GCNGC 4 cut(s) 85, 333, 396, 414
GsuI CTGGAG 1 cut(s) 67
HgaI GACGC 1 cut(s) 368
Hin1II CATG 4 cut(s) 24, 221, 238, 250
HincII GTYRAC 2 cut(s) 232, 358
HindII GTYRAC 2 cut(s) 232, 358
HindIII AAGCTT 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 232, 358
Hpy188I TCNGA 2 cut(s) 164, 318
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 232, 358
HpyAV CCTTC 3 cut(s) 45, 267, 289
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 84, 107, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 252, 359
Hsp92II CATG 4 cut(s) 24, 221, 238, 250
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 4 cut(s) 159, 177, 287, 313
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 2 cut(s) 122, 266
LpnPI CCDG 4 cut(s) 31, 237, 267, 283
Lsp1109I GCAGC 3 cut(s) 96, 400, 407
MaeI CTAG 2 cut(s) 138, 363
MalI GATC 4 cut(s) 161, 179, 289, 315
MboI GATC 4 cut(s) 159, 177, 287, 313
MboII GAAGA 4 cut(s) 49, 106, 196, 323
MluCI AATT 1 cut(s) 407
MnlI CCTC 6 cut(s) 33, 84, 93, 278, 340, 381
MwoI GCNNNNNNNGC 3 cut(s) 199, 252, 359
NdeII GATC 4 cut(s) 159, 177, 287, 313
NlaIII CATG 4 cut(s) 24, 221, 238, 250
NlaIV GGNNCC 1 cut(s) 268
NspI RCATGY 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 209
PkrI GCNGC 4 cut(s) 86, 334, 397, 415
PsiI TTATAA 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 86
RsaI GTAC 3 cut(s) 44, 62, 136
RsaNI GTAC 3 cut(s) 43, 61, 135
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 4 cut(s) 85, 333, 396, 414
Sau3AI GATC 4 cut(s) 159, 177, 287, 313
ScaI AGTACT 1 cut(s) 136
SetI ASST 8 cut(s) 44, 127, 171, 204, 300, 392, 400, 415
SfcI CTRYAG 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 1 cut(s) 407
SsiI CCGC 1 cut(s) 332
SspMI CTAG 2 cut(s) 138, 363
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 407
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 335
TscAI CASTG 1 cut(s) 333
TseI GCWGC 3 cut(s) 84, 395, 413
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 333
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 2 cut(s) 138, 363
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.