Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

55661361 .. 55726231

Gene Structure 64871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG334100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGATTGCTCCGACTACGTGCTACGAAAACTTGAAGAGGTACTGGAGGAGGAGAAGGTACCAAAGGCTGAGCGTTGACAACAAGAAGAAGCTGAGAGTTCAAAGGCTCGGCGGTGGCCCTAATGGGACTAGTCCTCCTCGGCGGTTTTTCAAGATCAGAAAGCTTCGGTTCCTCAAGTTCGTTTCGCCGATAAATCTATTGGCCAAGGTCCACGGTGCTTATGTTGACATGATGGTAATGATGGCGGGAAACGTTGGCGGCGCCAGAAGGATAGCAGGAGGGTCAAAGAAGGTGGCTAAAGCGCAAGATCAGATTTCCGTGGCGGCTACTTGCGGTGAGCAAGCCGTCGACACTAGATTGGTGTTGGAGATTTACAAGAGATTGGCGGCTTCTCGCCAATTAACTGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.59

Weight (kDa)

11.0

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	2 cut(s)	60, 263
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	7 cut(s)	114, 145, 248, 261, 326, 336, 389
AclI	AACGTT	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	44, 62
AgsI	TTSAA	3 cut(s)	37, 104, 154
AhlI	ACTAGT	1 cut(s)	131
AluBI	AGCT	2 cut(s)	94, 166
AluI	AGCT	2 cut(s)	94, 166
AoxI	GGCC	2 cut(s)	118, 204
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	266, 307
AspS9I	GGNCC	2 cut(s)	119, 211
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	60, 263
BccI	CCATC	2 cut(s)	229, 238
BceAI	ACGGC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	2 cut(s)	132, 357
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	3 cut(s)	262, 327, 390
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	3 cut(s)	263, 328, 391
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	119, 211
BmiI	GGNNCC	3 cut(s)	62, 173, 265
BpmI	CTGGAG	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	140, 207, 214, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	4 cut(s)	140, 207, 214, 321
BseMII	CTCAG	2 cut(s)	62, 86
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	3 cut(s)	64, 67, 129
BshFI	GGCC	2 cut(s)	120, 206
BshNI	GGYRCC	2 cut(s)	60, 263
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	120, 206
Bsp143I	GATC	2 cut(s)	156, 310
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	7 cut(s)	114, 145, 248, 261, 326, 336, 389
BspANI	GGCC	2 cut(s)	120, 206
BspCNI	CTCAG	2 cut(s)	63, 87
BspLI	GGNNCC	3 cut(s)	62, 173, 265
BspT107I	GGYRCC	2 cut(s)	60, 263
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	140, 207, 214, 321
BssMI	GATC	2 cut(s)	156, 310
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	71, 95
BstDSI	CCRYGG	2 cut(s)	214, 321
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	266, 307
BstKTI	GATC	2 cut(s)	159, 313
BstMBI	GATC	2 cut(s)	156, 310
BsuRI	GGCC	2 cut(s)	120, 206
BtgI	CCRYGG	2 cut(s)	214, 321
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	2 cut(s)	266, 307
Cfr13I	GGNCC	2 cut(s)	119, 211
Csp6I	GTAC	2 cut(s)	43, 61
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	2 cut(s)	43, 61
DdeI	CTNAG	2 cut(s)	71, 95
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	2 cut(s)	158, 312
DpnII	GATC	2 cut(s)	156, 310
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	235
FaiI	YATR	2 cut(s)	225, 233
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	262, 327, 390
Fsp4HI	GCNGC	3 cut(s)	262, 327, 390
FspBI	CTAG	2 cut(s)	132, 357
GlaI	GCGC	2 cut(s)	265, 306
GluI	GCNGC	3 cut(s)	262, 327, 390
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	120, 206
HhaI	GCGC	2 cut(s)	266, 307
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	2 cut(s)	264, 305
HinP1I	GCGC	2 cut(s)	264, 305
HincII	GTYRAC	3 cut(s)	79, 229, 352
HindII	GTYRAC	3 cut(s)	79, 229, 352
HindIII	AAGCTT	1 cut(s)	164
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	4 cut(s)	79, 214, 229, 352
Hpy188I	TCNGA	3 cut(s)	15, 161, 315
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	4 cut(s)	79, 214, 229, 352
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	51, 264, 286
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	20, 255
HpyF3I	CTNAG	2 cut(s)	71, 95
HpySE526I	ACGT	2 cut(s)	20, 255
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	2 cut(s)	264, 305
KasI	GGCGCC	1 cut(s)	263
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	156, 310
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	31, 264, 280
MaeI	CTAG	2 cut(s)	132, 357
MaeII	ACGT	2 cut(s)	20, 255
MalI	GATC	2 cut(s)	158, 312
MboI	GATC	2 cut(s)	156, 310
MboII	GAAGA	2 cut(s)	49, 100
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	1 cut(s)	401
MluNI	TGGCCA	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	38, 348
MnlI	CCTC	7 cut(s)	33, 42, 45, 147, 150, 185, 275
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	206
NarI	GGCGCC	1 cut(s)	264
NdeII	GATC	2 cut(s)	156, 310
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	3 cut(s)	62, 173, 265
NmeAIII	GCCGAG	2 cut(s)	90, 121
PkrI	GCNGC	3 cut(s)	263, 328, 391
PluTI	GGCGCC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	62, 173, 265
PspPI	GGNCC	2 cut(s)	119, 211
RsaI	GTAC	2 cut(s)	44, 62
RsaNI	GTAC	2 cut(s)	43, 61
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	262, 327, 390
Sau3AI	GATC	2 cut(s)	156, 310
Sau96I	GGNCC	2 cut(s)	119, 211
SetI	ASST	8 cut(s)	23, 44, 62, 96, 168, 213, 258, 297
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	1 cut(s)	401
SsiI	CCGC	7 cut(s)	114, 145, 248, 261, 326, 336, 389
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	132, 357
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	23, 258
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	401
TauI	GCSGC	3 cut(s)	264, 329, 392
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	132, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.