Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

27951912 .. 27952848

Gene Structure 937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGATCGCTCCGACTACCTGCTACGAAAACCTGAAGAGGTACTGGAGGAGGAGAAGGTACCAGAGACTGAACGGTGACAACAAGAAGAAGATGAGGGTCGTAAGGCTCGGTGGTGGACCTAATGGGATGAGCACTAGCCCTACTCGGCGGTCTTGGAGGGTCAGAACCACAGCAAAGCTCAGACTGATCAAGTATGTTACACCGATGAACCTCTTGGCCAAGCTCCACGGTGCTTATGTTGATATGATGGTTCGGACGGCCGGCAACGTTGGCGGTGCTAGGAGGATTGCAGGAGGGTCAAAGAAAGTGGCGAAAATGCAGGATCAGATTTCCATGGCAGCTTCCGAAGAAGCTGTTGATACTAGATTGGTTTTGGAGATTTACAAGAGGTTGGCAGCTTCTCGCCAATTAGCAGATGCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.13

Weight (kDa)

10.99

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	2 cut(s)	151, 276
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	2 cut(s)	219, 261
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	44, 62
AluBI	AGCT	5 cut(s)	181, 226, 344, 356, 401
AluI	AGCT	5 cut(s)	181, 226, 344, 356, 401
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	219, 261
ApeKI	GCWGC	2 cut(s)	341, 398
Asp718I	GGTACC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	353, 410
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	138, 282, 366
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	342, 399
BlsI	GCNGC	2 cut(s)	343, 400
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	229, 336
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	229, 336
BseGI	GGATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	64, 67
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	353, 410
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	221, 263
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	221, 263
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	6, 189, 325
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	151, 276
BspANI	GGCC	2 cut(s)	221, 263
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	62
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	229, 336
BssMI	GATC	3 cut(s)	6, 189, 325
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	77, 233
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	2 cut(s)	229, 336
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	9, 192, 328
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	6, 189, 325
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	353, 410
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	221, 263
BtgI	CCRYGG	2 cut(s)	229, 336
BtsCI	GGATG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	43, 61
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	109, 141, 181, 221, 226, 263, 344, 356, 401
CviKI_1	RGCY	9 cut(s)	109, 141, 181, 221, 226, 263, 344, 356, 401
CviQI	GTAC	2 cut(s)	43, 61
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	3 cut(s)	8, 191, 327
DpnII	GATC	3 cut(s)	6, 189, 325
EaeI	YGGCCR	2 cut(s)	219, 261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EclXI	CGGCCG	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	119
Eco52I	CGGCCG	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	340
FaiI	YATR	4 cut(s)	198, 240, 248, 338
FatI	CATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	342, 399
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	342, 399
FspBI	CTAG	3 cut(s)	138, 282, 366
GluI	GCNGC	2 cut(s)	342, 399
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	221, 263
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	1 cut(s)	340
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	6 cut(s)	15, 167, 185, 258, 330, 349
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	77, 233
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	293, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	340
KpnI	GGTACC	1 cut(s)	64
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	6, 189, 325
LmnI	GCTCC	2 cut(s)	16, 231
LpnPI	CCDG	7 cut(s)	31, 34, 47, 77, 277, 279, 308
Lsp1109I	GCAGC	2 cut(s)	353, 410
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	138, 282, 366
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	77, 199
MalI	GATC	3 cut(s)	8, 191, 327
MboI	GATC	3 cut(s)	6, 189, 325
MboII	GAAGA	4 cut(s)	49, 100, 103, 362
MhlI	GDGCHC	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	33, 42, 45, 90, 153, 224, 279, 290, 384
Mox20I	TGGCCA	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	273
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	6, 189, 325
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	343, 400
Psp1406I	AACGTT	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	2 cut(s)	44, 62
RsaNI	GTAC	2 cut(s)	43, 61
SatI	GCNGC	2 cut(s)	342, 399
Sau3AI	GATC	3 cut(s)	6, 189, 325
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	2 cut(s)	151, 276
SspMI	CTAG	3 cut(s)	138, 282, 366
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	77, 233
TaiI	ACGT	1 cut(s)	273
TasI	AATT	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	341, 398
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	119
XspI	CTAG	3 cut(s)	138, 282, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.