pycom16g03130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001685
Physical Location & Seq
Reverse (-)
1972396 .. 1972803
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g03130.1

Sequence Viewer

Length: 408 bp
ATGGAGATTGTTTCGACCACTTACTATGACAACTTGAAGAGGTGCTGGAGGAGGAGAAGGTACCAGAGGCTGAATGGTGACACCAAGAAGAAGATGAGGGTGGCGAGGCTCGGTGGCGGCAGAGCTAAAGGGAGTCCTAGACGCAGTTGGAAGCTCAAAACTAAGCTGAGGCTGCTGAAGCTTGTTTCCCCCATAAAGCTTTTGGCTAAGTTTAATAACGGTTACGTTGATATGATGATTCGGATGGCGGGCAAGGCCGGCGGCGTGGGAAGGATTGCGGCGAAGAAGATTGCAAAGCCCCAAGACCAGATTTCGGTGGCTTCTTGTGGTGACGAGTTAGTTGACAGCAGATTGGTTTTGGAGATTTACAAGAGGTTGGCAGCTTCTCGCCAACTAGCTGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.36

Weight (kDa)

10.93

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 4 cut(s) 117, 248, 261, 278
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 7 cut(s) 125, 154, 166, 181, 199, 383, 398
AluI AGCT 7 cut(s) 125, 154, 166, 181, 199, 383, 398
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 172, 380, 398
Asp718I GGTACC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 89, 341
BanI GGYRCC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 159, 385, 392
BccI CCATC 1 cut(s) 238
BfaI CTAG 2 cut(s) 138, 395
BisI GCNGC 6 cut(s) 118, 173, 262, 279, 381, 399
BlsI GCNGC 6 cut(s) 119, 174, 263, 280, 382, 400
BmiI GGNNCC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 257
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 64, 67
BseXI GCAGC 3 cut(s) 159, 385, 392
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 257
BspACI CCGC 4 cut(s) 117, 248, 261, 278
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 250, 259
BstDEI CTNAG 3 cut(s) 162, 167, 207
BstF5I GGATG 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 172, 178, 254, 258
BstV1I GCAGC 3 cut(s) 159, 385, 392
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 250, 259
CaiI CAGNNNCTG 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 61
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 3 cut(s) 162, 167, 207
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 197
FaiI YATR 3 cut(s) 27, 194, 233
FauI CCCGC 1 cut(s) 241
Fnu4HI GCNGC 6 cut(s) 118, 173, 262, 279, 381, 399
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 6 cut(s) 118, 173, 262, 279, 381, 399
FspBI CTAG 2 cut(s) 138, 395
GluI GCNGC 6 cut(s) 118, 173, 262, 279, 381, 399
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 179, 197
HinfI GANTC 2 cut(s) 133, 238
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 89, 341
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 51, 264
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 178, 254, 258
HpyF3I CTNAG 3 cut(s) 162, 167, 207
HpySE526I ACGT 1 cut(s) 225
KpnI GGTACC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 31, 77, 271, 320
Lsp1109I GCAGC 3 cut(s) 159, 385, 392
MaeI CTAG 2 cut(s) 138, 395
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 77, 221, 329
MboII GAAGA 5 cut(s) 49, 100, 103, 295, 298
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 8 cut(s) 33, 42, 45, 60, 90, 99, 162, 366
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 172, 178, 254, 258
NaeI GCCGGC 1 cut(s) 259
NgoMIV GCCGGC 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 77, 329
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 6 cut(s) 119, 174, 263, 280, 382, 400
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 70
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 6 cut(s) 118, 173, 262, 279, 381, 399
SchI GAGTC 1 cut(s) 142
SsiI CCGC 4 cut(s) 117, 248, 261, 278
SspMI CTAG 2 cut(s) 138, 395
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 14
TauI GCSGC 3 cut(s) 120, 264, 281
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 2 cut(s) 77, 329
TseI GCWGC 3 cut(s) 172, 380, 398
Tsp45I GTSAC 2 cut(s) 77, 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 71, 199
XspI CTAG 2 cut(s) 138, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.