Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

27921961 .. 27922386

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGATTGTTCCGAGTTCCTACTACGACAACTTGAAGAGGTATTGGAGGAGGAGAAGGTACCAAAGGTTGAATGTGGTCAGCAAGAAGAAAATGAAGGTTGCGAGGCTCGGCGGTGGAGCTACTGGGGGGAGTACTAGTCCTACTCGGTTTTTCAAGATCAGAAAGCTCCGATTGATCAAGTTTGTTTCACCGATAACGCTCTTGGCCAAGGTTCATGGTGCTTATGTCGATATGATGGTTCGCATGGCGGGCAACGTTGGTGGCGCCAGAAGAGTTGCAGGAGGATCAAAGAAGGTGGCGAAAATACAAGATCAGATTGTTTCGGTGGCGGCTTCTTGCGGCCGTCAGGAAGCCGTTGACACTAGATTTGTTTTGGAGATCTACAAGAGATTGGCAGCTTCTCGCCAGTTAGCTGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.81

Weight (kDa)

11.18

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	2 cut(s)	60, 266
AciI	CCGC	4 cut(s)	114, 251, 332, 342
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	2 cut(s)	207, 343
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	62, 136
AgsI	TTSAA	3 cut(s)	37, 73, 157
AhlI	ACTAGT	1 cut(s)	137
AluBI	AGCT	4 cut(s)	122, 169, 401, 416
AluI	AGCT	4 cut(s)	122, 169, 401, 416
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	2 cut(s)	207, 343
ApeKI	GCWGC	2 cut(s)	398, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	60, 266
BbvI	GCAGC	2 cut(s)	403, 410
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	330, 341
BclI	TGATCA	1 cut(s)	177
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	2 cut(s)	138, 366
BfoI	RGCGCY	1 cut(s)	270
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	4 cut(s)	333, 343, 399, 417
BlsI	GCNGC	4 cut(s)	334, 344, 400, 418
BmcAI	AGTACT	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	62, 268
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bse1I	ACTGG	2 cut(s)	130, 409
BseDI	CCNNGG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	130, 409
BseRI	GAGGAG	2 cut(s)	64, 67
BseX3I	CGGCCG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	403, 410
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	209, 345
BshNI	GGYRCC	2 cut(s)	60, 266
BsiEI	CGRYCG	1 cut(s)	346
BsnI	GGCC	2 cut(s)	209, 345
Bsp143I	GATC	5 cut(s)	159, 177, 287, 313, 381
BspACI	CCGC	4 cut(s)	114, 251, 332, 342
BspANI	GGCC	2 cut(s)	209, 345
BspLI	GGNNCC	2 cut(s)	62, 268
BspPI	GGATC	1 cut(s)	295
BspT107I	GGYRCC	2 cut(s)	60, 266
BsrI	ACTGG	2 cut(s)	130, 409
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	5 cut(s)	159, 177, 287, 313, 381
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	32, 268
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	162, 180, 290, 316, 384
BstMBI	GATC	5 cut(s)	159, 177, 287, 313, 381
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	403, 410
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BstZI	CGGCCG	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	209, 345
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	61, 135
CspCI	CAANNNNNGTGG	4 cut(s)	244, 279, 279, 314
CviAII	CATG	2 cut(s)	218, 247
CviJI	RGCY	9 cut(s)	109, 122, 169, 209, 335, 345, 356, 401, 416
CviKI_1	RGCY	9 cut(s)	109, 122, 169, 209, 335, 345, 356, 401, 416
CviQI	GTAC	2 cut(s)	61, 135
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	5 cut(s)	161, 179, 289, 315, 383
DpnII	GATC	5 cut(s)	159, 177, 287, 313, 381
EaeI	YGGCCR	2 cut(s)	207, 343
EagI	CGGCCG	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	32, 268
EarI	CTCTTC	2 cut(s)	32, 268
EclXI	CGGCCG	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	221, 250
FaiI	YATR	4 cut(s)	219, 228, 236, 248
FatI	CATG	2 cut(s)	217, 246
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	333, 343, 399, 417
Fsp4HI	GCNGC	4 cut(s)	333, 343, 399, 417
FspBI	CTAG	2 cut(s)	138, 366
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	4 cut(s)	333, 343, 399, 417
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	209, 345
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	221, 250
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	15, 164, 173, 318
Hpy188III	TCNNGA	2 cut(s)	157, 350
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	3 cut(s)	51, 91, 289
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	221, 250
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
KpnI	GGTACC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	159, 177, 287, 313, 381
LmnI	GCTCC	2 cut(s)	119, 174
LpnPI	CCDG	5 cut(s)	111, 267, 283, 335, 422
Lsp1109I	GCAGC	2 cut(s)	403, 410
MaeI	CTAG	2 cut(s)	138, 366
MaeII	ACGT	1 cut(s)	258
MalI	GATC	5 cut(s)	161, 179, 289, 315, 383
MboI	GATC	5 cut(s)	159, 177, 287, 313, 381
MboII	GAAGA	3 cut(s)	49, 100, 285
MflI	RGATCY	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	209
Mly113I	GGCGCC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	33, 42, 45, 99, 278
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	252
NarI	GGCGCC	1 cut(s)	267
NdeII	GATC	5 cut(s)	159, 177, 287, 313, 381
NlaIII	CATG	2 cut(s)	221, 250
NlaIV	GGNNCC	2 cut(s)	62, 268
NmeAIII	GCCGAG	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	334, 344, 400, 418
PluTI	GGCGCC	1 cut(s)	270
Psp1406I	AACGTT	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	62, 268
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	2 cut(s)	62, 136
RsaNI	GTAC	2 cut(s)	61, 135
SatI	GCNGC	4 cut(s)	333, 343, 399, 417
Sau3AI	GATC	5 cut(s)	159, 177, 287, 313, 381
ScaI	AGTACT	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	137
SsiI	CCGC	4 cut(s)	114, 251, 332, 342
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	138, 366
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	231
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	2 cut(s)	335, 345
TseI	GCWGC	2 cut(s)	398, 416
TspDTI	ATGAA	2 cut(s)	110, 206
XspI	CTAG	2 cut(s)	138, 366
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.