Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

1970217 .. 1970561

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAATGGTGAGACCAGAAAGAAGATGAGGGTCACCAGGCTCGGCGGAGGAGCTAAAGGGAGCAACAGTCCTAGGCGGAGTTGGAAGCTCAAGACCAAGCTGAGGTTGCTGAAGTTTGTTTCACCAATAAAACTTTTGGCAAAGTTGCATAATGGTTACGTTGACATGATGATTCGGATGGCGGGCAAGGCCGGGGGTGTGGGAAGGATTGCCGCGAAGAAAATTGCAAAACCCCAAGACCAGATTTCAATGGCTTCTTGTGGTGACGAATTAGTTGACAGCAGATTGGTTTTGGAGATTTACAAGAGGCTGTCTGCTTCTCGCCAACTAGCAGATGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.53

Weight (kDa)

10.73

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	215
AciI	CCGC	4 cut(s)	45, 76, 182, 213
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	53, 88, 100
AluI	AGCT	3 cut(s)	53, 88, 100
Alw26I	GTCTC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	339
AspA2I	CCTAGG	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	4 cut(s)	20, 25, 114, 275
AvrII	CCTAGG	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	2 cut(s)	172, 329
BciT130I	CCWGG	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	2 cut(s)	72, 329
BisI	GCNGC	2 cut(s)	213, 340
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	2 cut(s)	214, 341
Bme1390I	CCNGG	2 cut(s)	37, 193
BmrFI	CCNGG	2 cut(s)	37, 193
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	71, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	2 cut(s)	71, 192
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	5
BspACI	CCGC	4 cut(s)	45, 76, 182, 213
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	71, 192
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	101
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 188
BstNI	CCWGG	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	35, 191
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	184
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	8 cut(s)	40, 53, 88, 100, 191, 254, 310, 339
CviKI_1	RGCY	8 cut(s)	40, 53, 88, 100, 191, 254, 310, 339
DdeI	CTNAG	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	60, 91
Eco130I	CCWWGG	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	150, 167
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	213, 340
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	213, 340
FspBI	CTAG	2 cut(s)	72, 329
GluI	GCNGC	2 cut(s)	213, 340
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	163, 277
HindII	GTYRAC	2 cut(s)	163, 277
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	4 cut(s)	20, 25, 114, 275
Hpy166II	GTNNAC	2 cut(s)	163, 277
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	163, 277
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	148, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 188
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	50, 60
LpnPI	CCDG	5 cut(s)	22, 28, 49, 205, 254
Lsp1109I	GCAGC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	72, 329
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	31, 155, 263
MboII	GAAGA	2 cut(s)	34, 229
MluCI	AATT	2 cut(s)	222, 269
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	21, 41, 96, 300
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	37, 193
MvaI	CCWGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	106, 188
NciI	CCSGG	1 cut(s)	193
NlaIII	CATG	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	31, 263
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	214, 341
Psp6I	CCWGG	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	35
SatI	GCNGC	2 cut(s)	213, 340
ScrFI	CCNGG	2 cut(s)	37, 193
SetI	ASST	5 cut(s)	55, 90, 102, 107, 162
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	222, 269
SsiI	CCGC	4 cut(s)	45, 76, 182, 213
SspMI	CTAG	2 cut(s)	72, 329
StyD4I	CCNGG	2 cut(s)	35, 191
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	162
TasI	AATT	2 cut(s)	222, 269
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	31, 263
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	2 cut(s)	31, 263
TspDTI	ATGAA	1 cut(s)	17
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	71
XspI	CTAG	2 cut(s)	72, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.