Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

56440879 .. 56442155

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGATTGCTCCGACTACGTGCTACGAAAACTTGAAGAGGTACTGGAGGAGAAGAAGGTACCAGAGATTGAATGGTGACAAGAAGAAGAAGACGAGGGTCGTAAGGCTCGGTGGTGGACCTAATGGGAGCACTAGTCCTACTCGGCGGTCTTGGAAGATCAGAACCGCAGCAAAGCTTAGACTGATCAAGCTTGTTTCGCCGATAAAGCTGTTGGCCAAGCTCCACGGTGCTTATGTTGACATGATGGTTCGGACGGCAGGCAACGTTGGCGGCGGTAGGAGGATTGCAGGAGGATCAAAGAAGGTGGCAAAAGCGCAAGATCAGCTTTCTGTGGCGGCTTCCGAGGAAGCTGTTGACACCAGATTGGTTTTGGAGATTTACAAGAGATTGGCTGCTTCTCGCCAATTAGCAGATGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.77

Weight (kDa)

11.03

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	5 cut(s)	148, 168, 273, 276, 338
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	216
AfaI	GTAC	2 cut(s)	44, 62
AgsI	TTSAA	2 cut(s)	37, 73
AhlI	ACTAGT	1 cut(s)	134
AluBI	AGCT	6 cut(s)	178, 193, 211, 223, 328, 353
AluI	AGCT	6 cut(s)	178, 193, 211, 223, 328, 353
Alw21I	GWGCWC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	170, 395
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	182, 382
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	186
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	4 cut(s)	171, 274, 339, 396
BlsI	GCNGC	4 cut(s)	172, 275, 340, 397
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	406
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	226, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	226, 345
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	182, 382
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	159, 186, 296, 322
BspACI	CCGC	5 cut(s)	148, 168, 273, 276, 338
BspANI	GGCC	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	226, 345
BssMI	GATC	4 cut(s)	159, 186, 296, 322
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	4 cut(s)	162, 189, 299, 325
BstMBI	GATC	4 cut(s)	159, 186, 296, 322
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 208, 270, 325
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	182, 382
BstV2I	GAAGAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	262
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	43, 61
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	1 cut(s)	244
CviQI	GTAC	2 cut(s)	43, 61
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	4 cut(s)	161, 188, 298, 324
DpnII	GATC	4 cut(s)	159, 186, 296, 322
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	119
FaeI	CATG	1 cut(s)	247
FaiI	YATR	2 cut(s)	237, 245
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	171, 274, 339, 396
Fsp4HI	GCNGC	4 cut(s)	171, 274, 339, 396
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	4 cut(s)	171, 274, 339, 396
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	2 cut(s)	241, 358
HindII	GTYRAC	2 cut(s)	241, 358
HindIII	AAGCTT	2 cut(s)	176, 191
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	3 cut(s)	119, 241, 358
Hpy188I	TCNGA	4 cut(s)	15, 164, 255, 346
Hpy8I	GTNNAC	3 cut(s)	119, 241, 358
HpyAV	CCTTC	2 cut(s)	51, 298
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	20, 267
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 208, 270, 325
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	20, 267
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	317
KpnI	GGTACC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	159, 186, 296, 322
LmnI	GCTCC	3 cut(s)	16, 129, 228
LpnPI	CCDG	5 cut(s)	31, 77, 246, 276, 376
Lsp1109I	GCAGC	2 cut(s)	182, 382
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	20, 267
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	161, 188, 298, 324
MboI	GATC	4 cut(s)	159, 186, 296, 322
MboII	GAAGA	6 cut(s)	49, 66, 97, 100, 103, 169
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	6 cut(s)	33, 42, 90, 276, 287, 340
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	199, 208, 270, 325
NdeII	GATC	4 cut(s)	159, 186, 296, 322
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	172, 275, 340, 397
Ppu21I	YACGTR	1 cut(s)	21
PshAI	GACNNNNGTC	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	44, 62
RsaNI	GTAC	2 cut(s)	43, 61
SatI	GCNGC	4 cut(s)	171, 274, 339, 396
Sau3AI	GATC	4 cut(s)	159, 186, 296, 322
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	5 cut(s)	148, 168, 273, 276, 338
SspMI	CTAG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	23, 270
TasI	AATT	1 cut(s)	407
TauI	GCSGC	2 cut(s)	276, 341
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	170, 395
Tsp45I	GTSAC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	2 cut(s)	71, 370
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.