Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

64084582 .. 64085183

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGATTGCACCAAGCTCGTACTACAACAACATGAAGAGATACTGGAGGAGGAGGAGGTACCAAAGGCTGAGCGTCGACAACAAGAAGAAGCTGAGAGTTCAAAGGCTCGGCGGAGGCCCTAATGGGACTAGTCCTCCTCGGCGGTTTTTCAAGATCAGAAAGCTCCTCAAGTTCGTTTCCCCTATAACTCTCTTGGCCAAGTTCCATGGTGCTTATGTTGACATGATGGTCAAGATGGCGGGAAACGTTGGCGGCGCCAGAAGGATTGCAGGAGGATCAAAGAAGGTGGCGAAGGCACAAGATCAGATTTCGGTGGCAGCTTCTTGCAGCGAAGAAGCCGTTGACACCAGATTGGTTTTGGAGATTTACAAGAGATTGGCGGCTTCTCGGCAATTAGCAGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

10.91

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	2 cut(s)	60, 257
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	5 cut(s)	114, 145, 242, 255, 383
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	23, 62
AgsI	TTSAA	2 cut(s)	104, 154
AhlI	ACTAGT	1 cut(s)	131
AluBI	AGCT	4 cut(s)	18, 94, 166, 323
AluI	AGCT	4 cut(s)	18, 94, 166, 323
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	118, 198
ApeKI	GCWGC	3 cut(s)	320, 330, 401
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	60, 257
BbvI	GCAGC	2 cut(s)	332, 342
BccI	CCATC	2 cut(s)	223, 232
BceAI	ACGGC	1 cut(s)	326
BcgI	CGANNNNNNTGC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	5 cut(s)	256, 321, 331, 384, 402
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	5 cut(s)	257, 322, 332, 385, 403
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	62, 259
BpmI	CTGGAG	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	140, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	140, 208
BseMII	CTCAG	2 cut(s)	62, 86
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	5 cut(s)	64, 67, 70, 129, 158
BseXI	GCAGC	2 cut(s)	332, 342
BshFI	GGCC	2 cut(s)	120, 200
BshNI	GGYRCC	2 cut(s)	60, 257
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	120, 200
Bsp143I	GATC	3 cut(s)	156, 278, 304
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	5 cut(s)	114, 145, 242, 255, 383
BspANI	GGCC	2 cut(s)	120, 200
BspCNI	CTCAG	2 cut(s)	63, 87
BspLI	GGNNCC	2 cut(s)	62, 259
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	60, 257
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	140, 208
BssMI	GATC	3 cut(s)	156, 278, 304
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	71, 95
BstDSI	CCRYGG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	159, 281, 307
BstMBI	GATC	3 cut(s)	156, 278, 304
BstV1I	GCAGC	2 cut(s)	332, 342
BsuRI	GGCC	2 cut(s)	120, 200
BtgI	CCRYGG	1 cut(s)	208
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	22, 61
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	3 cut(s)	34, 209, 226
CviQI	GTAC	2 cut(s)	22, 61
DdeI	CTNAG	2 cut(s)	71, 95
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	3 cut(s)	158, 280, 306
DpnII	GATC	3 cut(s)	156, 278, 304
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	208
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	37, 212, 229
FaiI	YATR	5 cut(s)	35, 188, 210, 219, 227
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	33, 208, 225
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	256, 321, 331, 384, 402
Fsp4HI	GCNGC	5 cut(s)	256, 321, 331, 384, 402
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	5 cut(s)	256, 321, 331, 384, 402
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	120, 200
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	37, 212, 229
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	3 cut(s)	79, 223, 346
HindII	GTYRAC	3 cut(s)	79, 223, 346
Hpy166II	GTNNAC	3 cut(s)	79, 223, 346
Hpy188I	TCNGA	2 cut(s)	161, 309
Hpy188III	TCNNGA	2 cut(s)	154, 235
Hpy8I	GTNNAC	3 cut(s)	79, 223, 346
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	258, 280, 289
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	11, 272, 330
HpyF3I	CTNAG	2 cut(s)	71, 95
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	37, 212, 229
HspAI	GCGC	1 cut(s)	258
KasI	GGCGCC	1 cut(s)	257
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	156, 278, 304
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	4 cut(s)	31, 258, 274, 364
Lsp1109I	GCAGC	2 cut(s)	332, 342
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	249
MalI	GATC	3 cut(s)	158, 280, 306
MboI	GATC	3 cut(s)	156, 278, 304
MboII	GAAGA	3 cut(s)	49, 100, 347
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	258
MnlI	CCTC	9 cut(s)	42, 45, 48, 51, 110, 147, 150, 179, 269
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
NarI	GGCGCC	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	3 cut(s)	156, 278, 304
NlaIII	CATG	3 cut(s)	37, 212, 229
NlaIV	GGNNCC	2 cut(s)	62, 259
NmeAIII	GCCGAG	3 cut(s)	90, 121, 370
PkrI	GCNGC	5 cut(s)	257, 322, 332, 385, 403
PluTI	GGCGCC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	62, 259
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	23, 62
RsaNI	GTAC	2 cut(s)	22, 61
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	5 cut(s)	256, 321, 331, 384, 402
Sau3AI	GATC	3 cut(s)	156, 278, 304
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	7 cut(s)	20, 62, 96, 168, 252, 291, 325
SfoI	GGCGCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	5 cut(s)	114, 145, 242, 255, 383
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	395
TauI	GCSGC	2 cut(s)	258, 386
TseI	GCWGC	3 cut(s)	320, 330, 401
TspDTI	ATGAA	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.