Rh4CG353800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001685
Physical Location & Seq
Reverse (-)
61012170 .. 61012580
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG353800.1

Sequence Viewer

Length: 411 bp
ATGGAGATTGTTCCCACTACATGCTACGAAAACTTGAAGAGGTACTGGAGAAGGAGAAGGTACCAAAGACTGTATGGAGACTGCAGCAAGAGGAAGAAGAGGGTTGCAAGGCTCGGTGGTGGAGCTAATGGGAGTACTAGTCCTACTCGGTTTTTCAAGATCAGAAAGCTTCAATTGATCAAGTTTGTTTCGCCGATAAAGCTCTACGCCAAGTTTCATGGGGCTTATGTTGACATGATGGTTCGCATGGCAGGCAATGTTGGTGGAGCCAGAAGGGTTGCAGGAGGATCAAAGAAGGTGGCAAAAGCTGAAGATCAGATTGTTTCAGTGGCGGCTTCTTGCGGTGAGGAAGCCGTTGACACTAGATTGGTTTGGAGATTTATAAGAGGTTGGCAGCTTCTCGCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

10.73

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 2 cut(s) 332, 342
AclWI GGATC 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 44, 62, 136
AgsI TTSAA 3 cut(s) 37, 157, 173
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 5 cut(s) 125, 169, 202, 308, 397
AluI AGCT 5 cut(s) 125, 169, 202, 308, 397
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 84, 394
Asp718I GGTACC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 96, 406
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 338
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 72
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 2 cut(s) 138, 363
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 3 cut(s) 85, 333, 395
BlsI GCNGC 3 cut(s) 86, 334, 396
BmcAI AGTACT 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 62, 268
BpmI CTGGAG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bse1I ACTGG 2 cut(s) 50, 405
Bse3DI GCAATG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 50, 405
BseXI GCAGC 2 cut(s) 96, 406
BshNI GGYRCC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 72
Bsp143I GATC 4 cut(s) 159, 177, 287, 313
BspACI CCGC 2 cut(s) 332, 342
BspLI GGNNCC 2 cut(s) 62, 268
BspMAI CTGCAG 1 cut(s) 86
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 2 cut(s) 50, 405
BssMI GATC 4 cut(s) 159, 177, 287, 313
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 2 cut(s) 32, 92
BstC8I GCNNGC 1 cut(s) 253
BstKTI GATC 4 cut(s) 162, 180, 290, 316
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 4 cut(s) 159, 177, 287, 313
BstMWI GCNNNNNNNGC 2 cut(s) 199, 252
BstNSI RCATGY 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 96, 406
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 253
Csp6I GTAC 3 cut(s) 43, 61, 135
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 279, 314
CviAII CATG 4 cut(s) 21, 218, 235, 247
CviQI GTAC 3 cut(s) 43, 61, 135
DpnI GATC 4 cut(s) 161, 179, 289, 315
DpnII GATC 4 cut(s) 159, 177, 287, 313
Eam1104I CTCTTC 2 cut(s) 32, 92
EarI CTCTTC 2 cut(s) 32, 92
Eco57I CTGAAG 1 cut(s) 330
FaeI CATG 4 cut(s) 24, 221, 238, 250
FaiI YATR 7 cut(s) 22, 75, 219, 228, 236, 248, 383
FatI CATG 4 cut(s) 20, 217, 234, 246
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 85, 333, 395
Fsp4HI GCNGC 3 cut(s) 85, 333, 395
FspBI CTAG 2 cut(s) 138, 363
GluI GCNGC 3 cut(s) 85, 333, 395
GsuI CTGGAG 1 cut(s) 67
Hin1II CATG 4 cut(s) 24, 221, 238, 250
HincII GTYRAC 2 cut(s) 232, 358
HindII GTYRAC 2 cut(s) 232, 358
HindIII AAGCTT 1 cut(s) 167
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 232, 358
Hpy188I TCNGA 2 cut(s) 164, 318
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 232, 358
HpyAV CCTTC 4 cut(s) 45, 51, 267, 289
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 84, 107, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 252
Hsp92II CATG 4 cut(s) 24, 221, 238, 250
KpnI GGTACC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 4 cut(s) 159, 177, 287, 313
LmnI GCTCC 2 cut(s) 122, 266
LpnPI CCDG 4 cut(s) 31, 237, 267, 283
Lsp1109I GCAGC 2 cut(s) 96, 406
MaeI CTAG 2 cut(s) 138, 363
MalI GATC 4 cut(s) 161, 179, 289, 315
MboI GATC 4 cut(s) 159, 177, 287, 313
MboII GAAGA 4 cut(s) 49, 106, 109, 323
MfeI CAATTG 1 cut(s) 173
MluCI AATT 1 cut(s) 173
MnlI CCTC 6 cut(s) 33, 84, 93, 278, 340, 380
MunI CAATTG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 199, 252
NdeII GATC 4 cut(s) 159, 177, 287, 313
NlaIII CATG 4 cut(s) 24, 221, 238, 250
NlaIV GGNNCC 2 cut(s) 62, 268
NspI RCATGY 1 cut(s) 24
PkrI GCNGC 3 cut(s) 86, 334, 396
PsiI TTATAA 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 62, 268
PstI CTGCAG 1 cut(s) 86
RsaI GTAC 3 cut(s) 44, 62, 136
RsaNI GTAC 3 cut(s) 43, 61, 135
SatI GCNGC 3 cut(s) 85, 333, 395
Sau3AI GATC 4 cut(s) 159, 177, 287, 313
ScaI AGTACT 1 cut(s) 136
SetI ASST 9 cut(s) 44, 62, 127, 171, 204, 300, 310, 391, 399
SfcI CTRYAG 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 1 cut(s) 173
SsiI CCGC 2 cut(s) 332, 342
SspMI CTAG 2 cut(s) 138, 363
TaaI ACNGT 1 cut(s) 72
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 335
TscAI CASTG 1 cut(s) 333
TseI GCWGC 2 cut(s) 84, 394
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 333
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 2 cut(s) 138, 363
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.