Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

61041386 .. 61042197

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG354000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGATTGTTCCTAGTACATATTACGACAACTTGAAGAGGTATTGGAGGAGGAGAAGGTACCAAAGGCTGAATGTAGACAGCAAGAAGAAGATGAGGGTTGCGAGGCTCGGTGGTGGAGCTACTGGGAGTACCAGTCCTACTCAGTTTTTCAAGATCAGAAAGCTTCGATTGATCAAGTTTGTTTCGCCGATAACGCTCTTGGCCAAGTTCCATGGTGCTTATGTCGACATGATGGTTCGCATGGCAGGCAACGTTGGTGGGGCCAGAAGAGTTGCAGGAGGATCAAAGAAGGTGGCAAAAGCAGAAGATCAGATTGTTTCAGTGGCGGCGTCTTGCGGTGAGGAAGCCGTTGACACTAGATTGGTTTTGGAGATTTACAAGCGATTGGCAGCTTCTCGCCAGTTAGCTGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.6

Weight (kDa)

10.63

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccI	GTMKAC	2 cut(s)	78, 228
AciI	CCGC	2 cut(s)	329, 339
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	19, 62, 133
AgsI	TTSAA	2 cut(s)	37, 154
AluBI	AGCT	4 cut(s)	122, 166, 395, 410
AluI	AGCT	4 cut(s)	122, 166, 395, 410
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	204, 264
ApeKI	GCWGC	2 cut(s)	392, 410
Asp718I	GGTACC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	397, 404
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	2 cut(s)	15, 360
BisI	GCNGC	3 cut(s)	330, 393, 411
BlsI	GCNGC	3 cut(s)	331, 394, 412
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	62, 265
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	3 cut(s)	130, 135, 403
BseDI	CCNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	130, 135, 403
BseRI	GAGGAG	2 cut(s)	64, 67
BseXI	GCAGC	2 cut(s)	397, 404
BshFI	GGCC	2 cut(s)	206, 266
BshNI	GGYRCC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	206, 266
Bsp143I	GATC	4 cut(s)	156, 174, 284, 310
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	2 cut(s)	329, 339
BspANI	GGCC	2 cut(s)	206, 266
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	62, 265
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	130, 135, 403
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	4 cut(s)	156, 174, 284, 310
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	32, 265
BstACI	GRCGYC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	159, 177, 287, 313
BstMBI	GATC	4 cut(s)	156, 174, 284, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 249
BstV1I	GCAGC	2 cut(s)	397, 404
BsuRI	GGCC	2 cut(s)	206, 266
BtgI	CCRYGG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	264
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	18, 61, 132
CspCI	CAANNNNNGTGG	4 cut(s)	241, 276, 276, 311
CviAII	CATG	3 cut(s)	215, 232, 244
CviJI	RGCY	9 cut(s)	70, 109, 122, 166, 206, 266, 350, 395, 410
CviKI_1	RGCY	9 cut(s)	70, 109, 122, 166, 206, 266, 350, 395, 410
CviQI	GTAC	3 cut(s)	18, 61, 132
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	4 cut(s)	158, 176, 286, 312
DpnII	GATC	4 cut(s)	156, 174, 284, 310
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	32, 265
EarI	CTCTTC	2 cut(s)	32, 265
Eco130I	CCWWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	218, 235, 247
FaiI	YATR	5 cut(s)	22, 216, 225, 233, 245
FatI	CATG	3 cut(s)	214, 231, 243
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	2 cut(s)	78, 228
Fnu4HI	GCNGC	3 cut(s)	330, 393, 411
Fsp4HI	GCNGC	3 cut(s)	330, 393, 411
FspBI	CTAG	2 cut(s)	15, 360
GluI	GCNGC	3 cut(s)	330, 393, 411
HaeIII	GGCC	2 cut(s)	206, 266
HgaI	GACGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	218, 235, 247
HincII	GTYRAC	2 cut(s)	229, 355
HindII	GTYRAC	2 cut(s)	229, 355
HindIII	AAGCTT	1 cut(s)	164
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	79, 229, 355
Hpy188I	TCNGA	2 cut(s)	161, 315
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	3 cut(s)	79, 229, 355
HpyAV	CCTTC	2 cut(s)	51, 286
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 249
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	218, 235, 247
KpnI	GGTACC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	156, 174, 284, 310
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	6 cut(s)	111, 148, 234, 264, 280, 416
Lsp1109I	GCAGC	2 cut(s)	397, 404
MaeI	CTAG	2 cut(s)	15, 360
MaeII	ACGT	1 cut(s)	255
MalI	GATC	4 cut(s)	158, 176, 286, 312
MboI	GATC	4 cut(s)	156, 174, 284, 310
MboII	GAAGA	5 cut(s)	49, 100, 103, 282, 320
MlsI	TGGCCA	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	206
MnlI	CCTC	7 cut(s)	33, 42, 45, 90, 99, 275, 337
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	196, 249
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	4 cut(s)	156, 174, 284, 310
NlaIII	CATG	3 cut(s)	218, 235, 247
NlaIV	GGNNCC	2 cut(s)	62, 265
PkrI	GCNGC	3 cut(s)	331, 394, 412
Psp1406I	AACGTT	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	62, 265
PspPI	GGNCC	1 cut(s)	264
RsaI	GTAC	3 cut(s)	19, 62, 133
RsaNI	GTAC	3 cut(s)	18, 61, 132
SalI	GTCGAC	1 cut(s)	227
SatI	GCNGC	3 cut(s)	330, 393, 411
Sau3AI	GATC	4 cut(s)	156, 174, 284, 310
Sau96I	GGNCC	1 cut(s)	264
SetI	ASST	8 cut(s)	44, 62, 124, 168, 258, 297, 397, 412
SsiI	CCGC	2 cut(s)	329, 339
SspMI	CTAG	2 cut(s)	15, 360
StyI	CCWWGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	169, 228
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	332
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	2 cut(s)	392, 410
TspRI	CASTG	1 cut(s)	330
XmiI	GTMKAC	2 cut(s)	78, 228
XspI	CTAG	2 cut(s)	15, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.