Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

58072 .. 58488

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggagattgctccaagctcgtactacaacaacatgaagagatactggaggaggaggaggtaccaaaggctgagcgtcgacaacaagaagaagctgagagttcaaaggctcggcggaggccctaatgggactagtcctcctcggcggtttttcaagatcagaaagcttaaggtcctcaagttcgtttcccctataactctcttggccaagttccatggtgcttatgttgacatgatggtcaagatggcgggaaacgttggcggcgccagaaggattgcaggaggatcaaagaaggtggcgaaggcacaagatcagatttcgatgacagcttcttgcagcgaagaagccgttgacaccagagtggttttggagatttacaagagattggcggcttctcggaaattagcagcctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.67

Weight (kDa)

10.94

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	2 cut(s)	60, 263
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	5 cut(s)	114, 145, 248, 261, 389
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	23, 62
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	104, 154
AhlI	ACTAGT	1 cut(s)	131
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	18, 94, 166, 329
AluI	AGCT	4 cut(s)	18, 94, 166, 329
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	118, 204
ApeKI	GCWGC	2 cut(s)	336, 407
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	119, 172
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	60, 263
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	229, 238
BceAI	ACGGC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	4 cut(s)	262, 337, 390, 408
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	4 cut(s)	263, 338, 391, 409
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	119, 172
BmiI	GGNNCC	2 cut(s)	62, 265
BpmI	CTGGAG	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	140, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	140, 214
BseMII	CTCAG	2 cut(s)	62, 86
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	4 cut(s)	64, 67, 70, 129
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	120, 206
BshNI	GGYRCC	2 cut(s)	60, 263
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	120, 206
Bsp143I	GATC	3 cut(s)	156, 284, 310
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	5 cut(s)	114, 145, 248, 261, 389
BspANI	GGCC	2 cut(s)	120, 206
BspCNI	CTCAG	2 cut(s)	63, 87
BspLI	GGNNCC	2 cut(s)	62, 265
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	2 cut(s)	60, 263
BspTI	CTTAAG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	140, 214
BssMI	GATC	3 cut(s)	156, 284, 310
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	71, 95
BstDSI	CCRYGG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	159, 287, 313
BstMBI	GATC	3 cut(s)	156, 284, 310
BstV1I	GCAGC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	120, 206
BtgI	CCRYGG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	119, 172
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	22, 61
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	3 cut(s)	34, 215, 232
CviQI	GTAC	2 cut(s)	22, 61
DdeI	CTNAG	2 cut(s)	71, 95
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	3 cut(s)	158, 286, 312
DpnII	GATC	3 cut(s)	156, 284, 310
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	172
EcoO109I	RGGNCCY	2 cut(s)	119, 172
EcoT14I	CCWWGG	1 cut(s)	214
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	37, 218, 235
FaiI	YATR	5 cut(s)	35, 194, 216, 225, 233
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	33, 214, 231
FauI	CCCGC	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	262, 337, 390, 408
Fsp4HI	GCNGC	4 cut(s)	262, 337, 390, 408
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	262, 337, 390, 408
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	120, 206
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	37, 218, 235
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	3 cut(s)	79, 229, 352
HindII	GTYRAC	3 cut(s)	79, 229, 352
HindIII	AAGCTT	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	79, 229, 352
Hpy188I	TCNGA	3 cut(s)	161, 315, 399
Hpy188III	TCNNGA	2 cut(s)	154, 241
Hpy8I	GTNNAC	3 cut(s)	79, 229, 352
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	264, 286, 295
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	278, 336
HpyF3I	CTNAG	2 cut(s)	71, 95
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	37, 218, 235
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	156, 284, 310
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	31, 264, 280, 370
Lsp1109I	GCAGC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	255
MalI	GATC	3 cut(s)	158, 286, 312
MboI	GATC	3 cut(s)	156, 284, 310
MboII	GAAGA	3 cut(s)	49, 100, 353
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	1 cut(s)	401
MluNI	TGGCCA	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	264
MnlI	CCTC	9 cut(s)	42, 45, 48, 51, 110, 147, 150, 185, 275
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	206
MspCI	CTTAAG	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	156, 284, 310
NlaIII	CATG	3 cut(s)	37, 218, 235
NlaIV	GGNNCC	2 cut(s)	62, 265
NmeAIII	GCCGAG	2 cut(s)	90, 121
OliI	CACNNNNGTG	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	263, 338, 391, 409
PluTI	GGCGCC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	172
Psp1406I	AACGTT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	62, 265
PspPI	GGNCC	2 cut(s)	119, 172
PspPPI	RGGWCCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	23, 62
RsaNI	GTAC	2 cut(s)	22, 61
RseI	CAYNNNNRTG	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	4 cut(s)	262, 337, 390, 408
Sau3AI	GATC	3 cut(s)	156, 284, 310
Sau96I	GGNCC	2 cut(s)	119, 172
SetI	ASST	8 cut(s)	20, 62, 96, 168, 174, 258, 297, 331
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	167, 176
SmoI	CTYRAG	2 cut(s)	167, 176
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	1 cut(s)	401
SsiI	CCGC	5 cut(s)	114, 145, 248, 261, 389
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	78, 320
TasI	AATT	1 cut(s)	401
TauI	GCSGC	2 cut(s)	264, 392
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	2 cut(s)	336, 407
TspDTI	ATGAA	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.