Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

73228 .. 76691

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggagattgttcctagtacatattacgacaacttgaagaggtattggaggaggagaagttaccaaaggctgaatgtagacagcaagaagaagatgagggttgcgaggctcggtggtggagctactgggagtaccagtcctactcagtttttcaagatcagaaagcttcgattgatcaagtttgtttcgccgataacgctcttggccaagttccatggtgcttatgtcgacatgatggttcgcatggcaggcaacgttggtggggccagaagagttgcaggaggatcaaagaaggtggcaaaagcagaagatcagattgtttcagtggcggcgtcttgcggtgaggaaaccgttgacactagattggcgtgccagcaccgcggggtgcagtctttgggggagtcccgtgacctgacttcttctgcaagcgctgtggacgaggagagcaccaacctcgtcacaggattcttttcttgcctttcggagaaggacttcttgccttacgcggggcgttacccttgcttcactggaagtaacagtggcggttgtgctcgcagtcggctcctgggaagactgggactggaagtacggtcgccggaattggtaccggaggaggagcttggagaagcatcggaaaaactcctccggacgaaacccgggaccctccgtttagttcttttctacatggagctcttcactggatttccgctggttctctctttttatgtgtatgtggtgatgagcctcgacaatttgacatgtgggatgaaggattatggtgtggaagagtcttggacaaaaactcttgtttttgaaggcttgtatccaccaccagaactcaacaatgatgcttgtgaaccgctggtgtttttgaggaatggggacatcctattgtcctacaatgatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.68

Weight (kDa)

8.59

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	604
AccI	GTMKAC	2 cut(s)	78, 228
AccII	CGCG	2 cut(s)	381, 506
AccIII	TCCGGA	1 cut(s)	645
AciI	CCGC	8 cut(s)	329, 339, 379, 381, 506, 543, 707, 860
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	4 cut(s)	19, 133, 588, 606
AfeI	AGCGCT	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	3 cut(s)	37, 154, 815
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	4 cut(s)	122, 166, 619, 691
AluI	AGCT	4 cut(s)	122, 166, 619, 691
Alw21I	GWGCWC	3 cut(s)	449, 553, 693
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	645
Aor51HI	AGCGCT	1 cut(s)	430
AoxI	GGCC	2 cut(s)	204, 264
Asp700I	GAANNNNTTC	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	264, 660
AsuC2I	CCSGG	2 cut(s)	657, 658
AsuHPI	GGTGA	2 cut(s)	353, 748
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	3 cut(s)	449, 553, 693
BccI	CCATC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	1 cut(s)	566
BciVI	GTATCC	1 cut(s)	834
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	657, 658
BfaI	CTAG	2 cut(s)	15, 360
BfoI	RGCGCY	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	834
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	3 cut(s)	566, 657, 658
Bme18I	GGWCC	1 cut(s)	660
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	264, 660
BmiI	GGNNCC	5 cut(s)	265, 563, 606, 661, 662
BmrFI	CCNGG	3 cut(s)	566, 657, 658
BmrI	ACTGGG	2 cut(s)	135, 584
BmsI	GCATC	2 cut(s)	638, 838
BmuI	ACTGGG	2 cut(s)	135, 584
BpiI	GAAGAC	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	657, 658
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	214, 379, 565, 656
BsaWI	WCCGGW	2 cut(s)	607, 645
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	6 cut(s)	130, 135, 532, 579, 585, 703
BseAI	TCCGGA	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	4 cut(s)	214, 379, 565, 656
BseGI	GGATG	2 cut(s)	771, 885
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	6 cut(s)	130, 135, 532, 579, 585, 703
BseRI	GAGGAG	6 cut(s)	64, 67, 455, 626, 629, 632
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	381, 506
Bsh1285I	CGRYCG	1 cut(s)	593
BshFI	GGCC	2 cut(s)	206, 266
BshNI	GGYRCC	1 cut(s)	604
BsiEI	CGRYCG	1 cut(s)	593
BsiHKAI	GWGCWC	3 cut(s)	449, 553, 693
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	4 cut(s)	596, 608, 646, 657
BslFI	GGGAC	4 cut(s)	388, 591, 673, 896
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmFI	GGGAC	4 cut(s)	388, 591, 673, 896
BsnI	GGCC	2 cut(s)	206, 266
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	3 cut(s)	449, 553, 693
Bsp13I	TCCGGA	1 cut(s)	645
Bsp143I	GATC	4 cut(s)	156, 174, 284, 310
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	8 cut(s)	329, 339, 379, 381, 506, 543, 707, 860
BspANI	GGCC	2 cut(s)	206, 266
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	645
BspFNI	CGCG	2 cut(s)	381, 506
BspLI	GGNNCC	5 cut(s)	265, 563, 606, 661, 662
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	604
BsrI	ACTGG	6 cut(s)	130, 135, 532, 579, 585, 703
BssECI	CCNNGG	4 cut(s)	214, 379, 565, 656
BssMI	GATC	4 cut(s)	156, 174, 284, 310
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	3 cut(s)	352, 539, 591
Bst6I	CTCTTC	4 cut(s)	32, 265, 698, 780
BstACI	GRCGYC	1 cut(s)	332
BstC8I	GCNNGC	5 cut(s)	250, 370, 374, 427, 553
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	2 cut(s)	214, 379
BstF5I	GGATG	2 cut(s)	771, 885
BstFNI	CGCG	2 cut(s)	381, 506
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	4 cut(s)	159, 177, 287, 313
BstMBI	GATC	4 cut(s)	156, 174, 284, 310
BstMCI	CGRYCG	1 cut(s)	593
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 249, 378
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	762
BstSCI	CCNGG	3 cut(s)	564, 655, 656
BstUI	CGCG	2 cut(s)	381, 506
BstV2I	GAAGAC	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	206, 266
BtgI	CCRYGG	2 cut(s)	214, 379
BtsCI	GGATG	2 cut(s)	771, 885
BtsIMutI	CAGTG	4 cut(s)	330, 525, 544, 696
Cac8I	GCNNGC	5 cut(s)	250, 370, 374, 427, 553
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	264, 660
Cfr42I	CCGCGG	1 cut(s)	382
Cfr9I	CCCGGG	1 cut(s)	656
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	4 cut(s)	18, 132, 587, 605
CspCI	CAANNNNNGTGG	6 cut(s)	241, 276, 276, 311, 414, 449
CviAII	CATG	5 cut(s)	215, 232, 244, 685, 759
CviQI	GTAC	4 cut(s)	18, 132, 587, 605
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	4 cut(s)	158, 176, 286, 312
DpnII	GATC	4 cut(s)	156, 174, 284, 310
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	4 cut(s)	32, 265, 698, 780
EarI	CTCTTC	4 cut(s)	32, 265, 698, 780
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	660
Eco47III	AGCGCT	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	691
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	5 cut(s)	218, 235, 247, 688, 762
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	4 cut(s)	388, 591, 673, 896
FatI	CATG	5 cut(s)	214, 231, 243, 684, 758
FauI	CCCGC	2 cut(s)	374, 499
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	2 cut(s)	78, 228
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	2 cut(s)	778, 872
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	15, 360
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	206, 266
HapII	CCGG	4 cut(s)	596, 608, 646, 657
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	5 cut(s)	218, 235, 247, 688, 762
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	2 cut(s)	229, 355
HindII	GTYRAC	2 cut(s)	229, 355
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	401, 465, 788
HpaII	CCGG	4 cut(s)	596, 608, 646, 657
HphI	GGTGA	2 cut(s)	353, 748
Hpy166II	GTNNAC	5 cut(s)	79, 229, 355, 436, 857
Hpy188I	TCNGA	4 cut(s)	161, 315, 484, 634
Hpy188III	TCNNGA	2 cut(s)	154, 646
Hpy8I	GTNNAC	5 cut(s)	79, 229, 355, 436, 857
HpyAV	CCTTC	4 cut(s)	286, 481, 763, 809
HpyCH4III	ACNGT	3 cut(s)	352, 539, 591
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	278, 388, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 249, 378
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	5 cut(s)	218, 235, 247, 688, 762
HspAI	GCGC	1 cut(s)	429
KflI	GGGWCCC	1 cut(s)	660
Kpn2I	TCCGGA	1 cut(s)	645
KpnI	GGTACC	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	174
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	156, 174, 284, 310
LguI	GCTCTTC	1 cut(s)	698
LmnI	GCTCC	4 cut(s)	119, 567, 616, 688
LweI	GCATC	2 cut(s)	638, 838
MaeI	CTAG	2 cut(s)	15, 360
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	5 cut(s)	59, 407, 457, 512, 533
MalI	GATC	4 cut(s)	158, 176, 286, 312
MboI	GATC	4 cut(s)	156, 174, 284, 310
MboII	GAAGA	9 cut(s)	49, 100, 103, 282, 320, 411, 582, 685, 797
MhlI	GDGCHC	3 cut(s)	449, 553, 693
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	599, 751
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	410, 797
Mox20I	TGGCCA	1 cut(s)	206
MroI	TCCGGA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	3 cut(s)	381, 709, 862
MspI	CCGG	4 cut(s)	596, 608, 646, 657
MspR9I	CCNGG	3 cut(s)	566, 657, 658
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	2 cut(s)	381, 506
MwoI	GCNNNNNNNGC	3 cut(s)	196, 249, 378
NciI	CCSGG	2 cut(s)	657, 658
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	4 cut(s)	156, 174, 284, 310
NlaIII	CATG	5 cut(s)	218, 235, 247, 688, 762
NlaIV	GGNNCC	5 cut(s)	265, 563, 606, 661, 662
NmuCI	GTSAC	2 cut(s)	407, 457
NspI	RCATGY	1 cut(s)	762
PciI	ACATGT	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	409, 796
PpsI	GAGTC	2 cut(s)	409, 796
PpuMI	RGGWCCY	1 cut(s)	660
PscI	ACATGT	1 cut(s)	758
Psp124BI	GAGCTC	1 cut(s)	693
Psp1406I	AACGTT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	5 cut(s)	265, 563, 606, 661, 662
PspPI	GGNCC	2 cut(s)	264, 660
PspPPI	RGGWCCY	1 cut(s)	660
RsaI	GTAC	4 cut(s)	19, 133, 588, 606
RsaNI	GTAC	4 cut(s)	18, 132, 587, 605
SacI	GAGCTC	1 cut(s)	693
SacII	CCGCGG	1 cut(s)	382
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	698
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	4 cut(s)	156, 174, 284, 310
Sau96I	GGNCC	2 cut(s)	264, 660
SchI	GAGTC	2 cut(s)	410, 797
ScrFI	CCNGG	3 cut(s)	566, 657, 658
SduI	GDGCHC	3 cut(s)	449, 553, 693
SetI	ASST	9 cut(s)	44, 124, 168, 258, 297, 414, 456, 621, 693
SfaNI	GCATC	2 cut(s)	638, 838
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	660
SmaI	CCCGGG	1 cut(s)	658
Sse9I	AATT	2 cut(s)	599, 751
SsiI	CCGC	8 cut(s)	329, 339, 379, 381, 506, 543, 707, 860
SspMI	CTAG	2 cut(s)	15, 360
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	3 cut(s)	564, 655, 656
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	352, 539, 591
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	3 cut(s)	169, 228, 747
TasI	AATT	2 cut(s)	599, 751
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	465
TscAI	CASTG	4 cut(s)	330, 532, 544, 703
TseFI	GTSAC	2 cut(s)	407, 457
Tsp45I	GTSAC	2 cut(s)	407, 457
TspDTI	ATGAA	1 cut(s)	782
TspGWI	ACGGA	1 cut(s)	656
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	4 cut(s)	330, 532, 544, 703
VpaK11BI	GGWCC	1 cut(s)	660
XceI	RCATGY	1 cut(s)	762
XmaI	CCCGGG	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	78, 228
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	2 cut(s)	15, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.