Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001685

Physical Location & Seq

Genomic Coordinates Reverse (-)

2062336 .. 2062794

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGATTGTTCCGACTACGTACTACGACAGCTTGAAGAGGTACTGGAGGAGGAGGAGCTACCAGAGGCTGCATGGCGAGACTAGAAAGAAGATGAGGGTTGCGAGGCTCGGCGGGGGAGCAAAGGGGAGCACTAGTCCTAAACGTAGTTGGAAGCTCAAGACCAAGCTGAGGCTGCTGAAGTATGTTTCTCCTATCAAGTTTTTGGCTAAGTTGCATAATGGTTACGTTGACACGATGATTCGGATGGCGGGCAAGGCCTGCGGTGTCGGGATGATTGCCGCGAAGAAGATCGCAAAACCCCAAGATCAGGTTTCAATGGCTACTTGTGGCAACGAGTTAGTTGACAGCAGACTGGTTTTGGAGATTTACAAGAGATTGGCTGCTTCCCGCCAATTAGCTGAGCATGGATTGATAGTTGAAAGCCAAAGCAACTTCTTCAACTTGATGGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.36

Weight (kDa)

10.34

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26582 FvH4_4g26590 FvH4_4g26620 FvH4_4g26630
prunus_persica	Prupe.1G317600_v2.0.a1 Prupe.1G317700_v2.0.a1
pyrus_communis	pycom13g03010 pycom13g03020 pycom16g03120 pycom16g03130 pycom16g03140
rosa_chinensis	RchiOBHm_Chr4g0434241 RchiOBHm_Chr4g0434311
rosa_laevigata	RLG00000006684 RLG00000006685 RLG00000006687 RLG00000006688 RLG00000006689
rosa_multiflora	Rmu_sc0000459.1_g000013 Rmu_sc0000459.1_g000015 Rmu_sc0000459.1_g000018 Rmu_sc0000459.1_g000023
rosa_roxburghii	Rroxscaffold_5G00375630 Rroxscaffold_5G00375640 Rroxscaffold_5G00375650 Rroxscaffold_5G00375660 Rroxscaffold_5G00375670
rosa_samantha	Rh4AG330500 Rh4AG330600 Rh4AG330700 Rh4AG330800 Rh4AG330900 Rh4AG331100 Rh4BG338000 Rh4BG338200 Rh4BG338500 Rh4BG338600 Rh4BG338900 Rh4BG339000 Rh4CG353400 Rh4CG353600 Rh4CG353800 Rh4CG353900 Rh4CG354000 Rh4CG354100 Rh4DG334100
rosa_wichuraiana	Rw4G028670 Rw4G028690 Rw4G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	284
AciI	CCGC	5 cut(s)	114, 251, 264, 282, 391
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	23, 44
AfiI	CCNNNNNNNGG	2 cut(s)	171, 310
AgsI	TTSAA	4 cut(s)	37, 318, 422, 442
AhlI	ACTAGT	1 cut(s)	134
AluBI	AGCT	5 cut(s)	33, 60, 157, 169, 401
AluI	AGCT	5 cut(s)	33, 60, 157, 169, 401
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	3 cut(s)	70, 175, 383
Bbv12I	GWGCWC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	57, 162, 370
BccI	CCATC	2 cut(s)	241, 442
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	2 cut(s)	84, 135
BisI	GCNGC	4 cut(s)	71, 176, 282, 384
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	4 cut(s)	72, 177, 283, 385
BpmI	CTGGAG	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 310
Bse1I	ACTGG	2 cut(s)	50, 360
BseGI	GGATG	2 cut(s)	252, 279
BseLI	CCNNNNNNNGG	2 cut(s)	171, 310
BseMII	CTCAG	2 cut(s)	161, 393
BseNI	ACTGG	2 cut(s)	50, 360
BseRI	GAGGAG	3 cut(s)	64, 67, 70
BseXI	GCAGC	3 cut(s)	57, 162, 370
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	171, 310
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	291, 307
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	5 cut(s)	114, 251, 264, 282, 391
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	162, 394
BspFNI	CGCG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	50, 360
BssMI	GATC	2 cut(s)	291, 307
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	253, 262
BstDEI	CTNAG	3 cut(s)	170, 210, 402
BstF5I	GGATG	2 cut(s)	252, 279
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	294, 310
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	291, 307
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 257, 261
BstSNI	TACGTA	1 cut(s)	21
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	57, 162, 370
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	252, 279
Cac8I	GCNNGC	2 cut(s)	253, 262
CaiI	CAGNNNCTG	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	22, 43
CviAII	CATG	2 cut(s)	74, 407
CviQI	GTAC	2 cut(s)	22, 43
DdeI	CTNAG	3 cut(s)	170, 210, 402
DpnI	GATC	2 cut(s)	293, 309
DpnII	GATC	2 cut(s)	291, 307
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco105I	TACGTA	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	200
FaeI	CATG	2 cut(s)	77, 410
FaiI	YATR	5 cut(s)	75, 186, 219, 408, 455
FatI	CATG	2 cut(s)	73, 406
FauI	CCCGC	3 cut(s)	107, 244, 398
Fnu4HI	GCNGC	4 cut(s)	71, 176, 282, 384
FokI	GGATG	2 cut(s)	259, 286
Fsp4HI	GCNGC	4 cut(s)	71, 176, 282, 384
FspBI	CTAG	2 cut(s)	84, 135
GluI	GCNGC	4 cut(s)	71, 176, 282, 384
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	77, 410
HincII	GTYRAC	2 cut(s)	232, 346
HindII	GTYRAC	2 cut(s)	232, 346
HinfI	GANTC	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	232, 346
Hpy188I	TCNGA	2 cut(s)	15, 246
Hpy188III	TCNNGA	2 cut(s)	160, 271
Hpy8I	GTNNAC	2 cut(s)	232, 346
HpyCH4IV	ACGT	3 cut(s)	20, 145, 228
HpyCH4V	TGCA	2 cut(s)	73, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 257, 261
HpyF3I	CTNAG	3 cut(s)	170, 210, 402
HpySE526I	ACGT	3 cut(s)	20, 145, 228
Hsp92II	CATG	2 cut(s)	77, 410
Kzo9I	GATC	2 cut(s)	291, 307
LmnI	GCTCC	3 cut(s)	57, 119, 129
LpnPI	CCDG	5 cut(s)	31, 77, 274, 296, 341
Lsp1109I	GCAGC	3 cut(s)	57, 162, 370
MaeI	CTAG	2 cut(s)	84, 135
MaeII	ACGT	3 cut(s)	20, 145, 228
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	2 cut(s)	293, 309
MboI	GATC	2 cut(s)	291, 307
MboII	GAAGA	5 cut(s)	49, 103, 298, 301, 430
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	395
MmeI	TCCRAC	2 cut(s)	38, 131
MnlI	CCTC	8 cut(s)	33, 42, 45, 48, 60, 90, 99, 165
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	175, 257, 261
NdeII	GATC	2 cut(s)	291, 307
NlaIII	CATG	2 cut(s)	77, 410
NmeAIII	GCCGAG	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	4 cut(s)	72, 177, 283, 385
Ppu21I	YACGTR	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	2 cut(s)	23, 44
RsaNI	GTAC	2 cut(s)	22, 43
SatI	GCNGC	4 cut(s)	71, 176, 282, 384
Sau3AI	GATC	2 cut(s)	291, 307
SduI	GDGCHC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SnaBI	TACGTA	1 cut(s)	21
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	1 cut(s)	395
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	5 cut(s)	114, 251, 264, 282, 391
SspMI	CTAG	2 cut(s)	84, 135
StuI	AGGCCT	1 cut(s)	260
TaiI	ACGT	3 cut(s)	23, 148, 231
TasI	AATT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	70, 175, 383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XspI	CTAG	2 cut(s)	84, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.