Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Forward (+)

31387547 .. 31390889

Gene Structure 3343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGATTCGAAGAAGCTTGAGCAGTTGTTCTCTCCCGGAAGAAAAGTGATTTCTGGGTTTAATTTGGGAGTTGGAGCTTCTCTGATTGTAATCGCCGTACTTTTTGTCACTTATTCTTTAAAGAGTCCTGTTGTGGACCAAAGGATCTATACTCCTGGTGTAAATTCCTCTTTTGTTTCATGGCCTTTCTCGTTTTCAAGTACTGAAAATTCTGTTACATCTGACAAGCAAGTCTCTGTGGGGTCTAGCAACACTACCCAATTGGGAAATTTTACAGAGGAAGTTAGAGATGGAAGCTCTGGGGTTGAAGAAGGAAGGGTTGAGCATAAAGAAGATGATGAGTTTGGTTCAAATGAGGGAGGAGGTGTTTTGGGGAATTCCTCTGAGATTTTGAGTAATGGAAGCTTGCATGTTGAAGGTGGGAAAGAGACAGTTTTGGAGAAGACTGAGATGGGGAATTTAACAGAGGAAGTTAAAGATGGAAGCTCTGGGGTTGAGGAAGGAAGAGTTGAAGGGAAAGATGGTGGCTTGGATTCAAGAAATTCCTCTGAGATTTTGAAATCTGAGAGCTTGCATGGTGAAGGTGGGAAGGAAATTGGGAATTTAAGCATGTCTGGGAAAGAAGATGTGCATGCAGAGGAAACAGTTGAAGGTAGTTTTTCAAAGAATTCTAGTAATGGGGATGGGAAGGTAACAGATGATCATCATGGAAATTCGACTCAGAAAACTGAGGTCATTGATTTTGATTCTCAAACTTGGGAAATGCCTAGTGATTCTGATGAGAAATGTGATATTTTTGATGGTAAATGGGTGAGAGATGATTCAAAGCCATACTATCCTGGAGGTTCATGTCCACACGTTGATAAGGTGTGGAACTGTCACTCTAATCGAAGGCCGGACAATGCTTTCCTAAAATGGAAATGGCAGCCGAATCATTGTGACATCCCTAGTTTGAATGCGACTGATTTTCTGGAGAGATTGAGAGGACAGAGGCTGGTTTTTGTGGGGGATTCACTAAATAGGAACATGTGGGAGTCTCTTGTGTGCATTCTCCGTCACAGCGTTCGGCACAAAAAAAAGGTGTATGAGATTTCTGGAAGGACGGATTTTAAGAAGAAGGGGATATATGCATTCAGGTTTGAGGAGTACAATTGTTCTGTGGATTTTGTGGTTGCTCCATTCCTTGTTAGGAAGTCATCATTCAAAGGCAAAAACAGTTGGTTTGAGACATTGAGGTTGGATTTGATGGACCCGACTACAAAAACGTATCGTGACGCTGATGTTCTAGTTTTTAATACTGGACATTGGTGGACACATGAGAAAACATCTAAAGGAGAAGACTATTACCAAGAAGGCAACTATGTTCATCCGAGGCTCAAGGCTCTTGAAGCATACAAGAGAGCTCTCACCACTTGGGCGAGATGGGTGGACACATATATCAATGCCAACAAGACTCGGGTTTTCTTCAGAGGATATTCAGTCACCCATTTCAGTGGAGGGCAATGGAACTCAGGTGGACAGTGCCACAGAGAAACAGAACCAATCTTTAACGAGACTTATCTAACGCACTACCCTTCAAAAATGAGAGCTCTAGAGTCTGTACTTAAAGAAATGAAAACTCCAGTGACATATCTTAACATTACTAGGCTTACGGATTATAGAAAAGATGGACACCCTTCCATTTACAGAACAATATACAAGACAAAACAAGCCCAAATTAAAGCTGAACAATCTCAGGATTGCAGTCATTGGTGCTTACCTGGGGTTCCTGATACTTGGAACGAATTGTTATACGCTTTGCTATTGCAGACTGGATGGGGATCACGGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

612

Amino Acids

69.07

Weight (kDa)

6.06

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	261 - 314	1.1e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	315 - 443	2.4e-40	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	152, 1828
AcsI	RAATTY	9 cut(s)	163, 208, 268, 376, 457, 541, 601, 667, 712
AcuI	CTGAAG	1 cut(s)	1450
AfaI	GTAC	4 cut(s)	99, 202, 1148, 1602
AflIII	ACRYGT	2 cut(s)	856, 1026
AjnI	CCWGG	3 cut(s)	154, 838, 1759
AluBI	AGCT	9 cut(s)	16, 77, 297, 405, 486, 570, 1403, 1589, 1724
AluI	AGCT	9 cut(s)	16, 77, 297, 405, 486, 570, 1403, 1589, 1724
Alw21I	GWGCWC	2 cut(s)	1405, 1591
Alw26I	GTCTC	5 cut(s)	238, 422, 1041, 1220, 1547
AlwI	GGATC	2 cut(s)	152, 1828
AlwNI	CAGNNNCTG	1 cut(s)	994
Ama87I	CYCGRG	1 cut(s)	1455
AoxI	GGCC	2 cut(s)	182, 893
ApeKI	GCWGC	1 cut(s)	925
ApoI	RAATTY	9 cut(s)	163, 208, 268, 376, 457, 541, 601, 667, 712
AspS9I	GGNCC	2 cut(s)	136, 1249
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	4 cut(s)	590, 823, 1399, 1474
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	1455
AvaII	GGWCC	2 cut(s)	136, 1249
BanII	GRGCYC	2 cut(s)	1405, 1591
BbsI	GAAGAC	2 cut(s)	449, 1344
Bbv12I	GWGCWC	2 cut(s)	1405, 1591
BbvI	GCAGC	1 cut(s)	937
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	3 cut(s)	156, 840, 1761
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	5 cut(s)	238, 422, 1041, 1220, 1547
BfaI	CTAG	7 cut(s)	246, 672, 768, 948, 1286, 1592, 1644
BisI	GCNGC	1 cut(s)	926
BlsI	GCNGC	1 cut(s)	927
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	4 cut(s)	36, 156, 840, 1761
Bme18I	GGWCC	2 cut(s)	136, 1249
BmeT110I	CYCGRG	1 cut(s)	1455
BmgT120I	GGNCC	2 cut(s)	136, 1249
BmiI	GGNNCC	2 cut(s)	1251, 1767
BmrFI	CCNGG	4 cut(s)	36, 156, 840, 1761
BpiI	GAAGAC	2 cut(s)	449, 1344
BpmI	CTGGAG	3 cut(s)	861, 992, 1605
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	38, 1361
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	3 cut(s)	89, 702, 1819
BsaJI	CCNNGG	2 cut(s)	1370, 1760
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bse1I	ACTGG	3 cut(s)	1303, 1622, 1816
Bse3DI	GCAATG	1 cut(s)	1508
Bse8I	GATNNNNATC	3 cut(s)	89, 702, 1819
BseBI	CCWGG	3 cut(s)	156, 840, 1761
BseDI	CCNNGG	2 cut(s)	1370, 1760
BseGI	GGATG	4 cut(s)	688, 942, 1366, 1820
BseJI	GATNNNNATC	3 cut(s)	89, 702, 1819
BseMI	GCAATG	1 cut(s)	1508
BseMII	CTCAG	8 cut(s)	375, 438, 540, 555, 720, 734, 1524, 1748
BseNI	ACTGG	3 cut(s)	1303, 1622, 1816
BseRI	GAGGAG	2 cut(s)	375, 1157
BseXI	GCAGC	1 cut(s)	937
BshFI	GGCC	2 cut(s)	184, 895
BsiHKAI	GWGCWC	2 cut(s)	1405, 1591
BsiHKCI	CYCGRG	1 cut(s)	1455
BsiSI	CCGG	2 cut(s)	36, 896
BsmAI	GTCTC	5 cut(s)	238, 422, 1041, 1220, 1547
BsmI	GAATGC	3 cut(s)	961, 1047, 1130
BsnI	GGCC	2 cut(s)	184, 895
BsoBI	CYCGRG	1 cut(s)	1455
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	1405, 1591
Bsp143I	GATC	3 cut(s)	144, 700, 1820
BspANI	GGCC	2 cut(s)	184, 895
BspCNI	CTCAG	8 cut(s)	376, 439, 541, 556, 721, 733, 1523, 1747
BspLI	GGNNCC	2 cut(s)	1251, 1767
BspPI	GGATC	2 cut(s)	152, 1828
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	1508
BsrI	ACTGG	3 cut(s)	1303, 1622, 1816
BssECI	CCNNGG	2 cut(s)	1370, 1760
BssMI	GATC	3 cut(s)	144, 700, 1820
Bst2UI	CCWGG	3 cut(s)	156, 840, 1761
Bst4CI	ACNGT	5 cut(s)	433, 646, 878, 1217, 1521
Bst6I	CTCTTC	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	407, 572, 633
BstDEI	CTNAG	8 cut(s)	384, 447, 549, 564, 720, 729, 1510, 1734
BstF5I	GGATG	4 cut(s)	688, 942, 1366, 1820
BstKTI	GATC	3 cut(s)	147, 703, 1823
BstMAI	GTCTC	5 cut(s)	238, 422, 1041, 1220, 1547
BstMBI	GATC	3 cut(s)	144, 700, 1820
BstMWI	GCNNNNNNNGC	1 cut(s)	1388
BstNI	CCWGG	3 cut(s)	156, 840, 1761
BstNSI	RCATGY	4 cut(s)	413, 613, 635, 1030
BstSCI	CCNGG	4 cut(s)	34, 154, 838, 1759
BstV1I	GCAGC	1 cut(s)	937
BstV2I	GAAGAC	2 cut(s)	449, 1344
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	1493
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	184, 895
BtsCI	GGATG	4 cut(s)	688, 942, 1366, 1820
BtsIMutI	CAGTG	3 cut(s)	1498, 1526, 1629
Cac8I	GCNNGC	3 cut(s)	407, 572, 633
CaiI	CAGNNNCTG	1 cut(s)	994
Cfr13I	GGNCC	2 cut(s)	136, 1249
CseI	GACGC	1 cut(s)	1283
Csp6I	GTAC	4 cut(s)	98, 201, 1147, 1601
CviAII	CATG	9 cut(s)	180, 410, 575, 610, 632, 707, 849, 1027, 1316
CviQI	GTAC	4 cut(s)	98, 201, 1147, 1601
DdeI	CTNAG	8 cut(s)	384, 447, 549, 564, 720, 729, 1510, 1734
DpnI	GATC	3 cut(s)	146, 702, 1822
DpnII	GATC	3 cut(s)	144, 700, 1820
DraI	TTTAAA	1 cut(s)	120
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Ecl136II	GAGCTC	2 cut(s)	1403, 1589
Eco24I	GRGCYC	2 cut(s)	1405, 1591
Eco47I	GGWCC	2 cut(s)	136, 1249
Eco53kI	GAGCTC	2 cut(s)	1403, 1589
Eco57I	CTGAAG	1 cut(s)	1450
Eco88I	CYCGRG	1 cut(s)	1455
EcoICRI	GAGCTC	2 cut(s)	1403, 1589
EcoRI	GAATTC	2 cut(s)	376, 667
EcoRII	CCWGG	3 cut(s)	154, 838, 1759
EcoT22I	ATGCAT	1 cut(s)	1132
EcoT38I	GRGCYC	2 cut(s)	1405, 1591
FaeI	CATG	9 cut(s)	183, 413, 578, 613, 635, 710, 852, 1030, 1319
FatI	CATG	9 cut(s)	179, 409, 574, 609, 631, 706, 848, 1026, 1315
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	1 cut(s)	926
FokI	GGATG	4 cut(s)	695, 929, 1353, 1827
FriOI	GRGCYC	2 cut(s)	1405, 1591
Fsp4HI	GCNGC	1 cut(s)	926
FspBI	CTAG	7 cut(s)	246, 672, 768, 948, 1286, 1592, 1644
GluI	GCNGC	1 cut(s)	926
GsuI	CTGGAG	3 cut(s)	861, 992, 1605
HaeIII	GGCC	2 cut(s)	184, 895
HapII	CCGG	2 cut(s)	36, 896
HgaI	GACGC	1 cut(s)	1283
Hin1II	CATG	9 cut(s)	183, 413, 578, 613, 635, 710, 852, 1030, 1319
HindIII	AAGCTT	2 cut(s)	14, 403
HpaII	CCGG	2 cut(s)	36, 896
HphI	GGTGA	4 cut(s)	590, 823, 1399, 1474
Hpy166II	GTNNAC	5 cut(s)	136, 854, 1311, 1429, 1517
Hpy188I	TCNGA	9 cut(s)	84, 223, 385, 550, 565, 723, 778, 1371, 1469
Hpy188III	TCNNGA	8 cut(s)	537, 971, 1095, 1271, 1385, 1592, 1736, 1769
Hpy8I	GTNNAC	5 cut(s)	136, 854, 1311, 1429, 1517
HpyCH4III	ACNGT	5 cut(s)	433, 646, 878, 1217, 1521
HpyCH4IV	ACGT	2 cut(s)	858, 1265
HpyCH4V	TGCA	8 cut(s)	409, 574, 631, 635, 1047, 1130, 1743, 1807
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1388
HpyF3I	CTNAG	8 cut(s)	384, 447, 549, 564, 720, 729, 1510, 1734
HpySE526I	ACGT	2 cut(s)	858, 1265
Hsp92II	CATG	9 cut(s)	183, 413, 578, 613, 635, 710, 852, 1030, 1319
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	144, 700, 1820
LmnI	GCTCC	2 cut(s)	74, 1180
Lsp1109I	GCAGC	1 cut(s)	937
MaeI	CTAG	7 cut(s)	246, 672, 768, 948, 1286, 1592, 1644
MaeII	ACGT	2 cut(s)	858, 1265
MaeIII	GTNAC	9 cut(s)	106, 214, 691, 878, 938, 1055, 1271, 1480, 1624
MalI	GATC	3 cut(s)	146, 702, 1822
MboI	GATC	3 cut(s)	144, 700, 1820
MfeI	CAATTG	2 cut(s)	260, 1150
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	1405, 1591
MlyI	GAGTC	5 cut(s)	133, 712, 1043, 1447, 1604
MmeI	TCCRAC	2 cut(s)	52, 1218
Mph1103I	ATGCAT	1 cut(s)	1132
MslI	CAYNNNNRTG	1 cut(s)	1491
MspI	CCGG	2 cut(s)	36, 896
MspR9I	CCNGG	4 cut(s)	36, 156, 840, 1761
MunI	CAATTG	2 cut(s)	260, 1150
Mva1269I	GAATGC	3 cut(s)	961, 1047, 1130
MvaI	CCWGG	3 cut(s)	156, 840, 1761
MwoI	GCNNNNNNNGC	1 cut(s)	1388
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	144, 700, 1820
NlaIII	CATG	9 cut(s)	183, 413, 578, 613, 635, 710, 852, 1030, 1319
NlaIV	GGNNCC	2 cut(s)	1251, 1767
NmuCI	GTSAC	7 cut(s)	106, 878, 938, 1055, 1271, 1480, 1624
NsiI	ATGCAT	1 cut(s)	1132
NspI	RCATGY	4 cut(s)	413, 613, 635, 1030
NspV	TTCGAA	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	635
PciI	ACATGT	1 cut(s)	1026
PctI	GAATGC	3 cut(s)	961, 1047, 1130
PfeI	GAWTC	7 cut(s)	5, 533, 746, 773, 821, 931, 1010
PfoI	TCCNGGA	2 cut(s)	34, 838
PkrI	GCNGC	1 cut(s)	927
PleI	GAGTC	5 cut(s)	132, 712, 1042, 1447, 1603
PpsI	GAGTC	5 cut(s)	132, 712, 1042, 1447, 1603
PscI	ACATGT	1 cut(s)	1026
Psp124BI	GAGCTC	2 cut(s)	1405, 1591
Psp6I	CCWGG	3 cut(s)	154, 838, 1759
PspGI	CCWGG	3 cut(s)	154, 838, 1759
PspN4I	GGNNCC	2 cut(s)	1251, 1767
PspPI	GGNCC	2 cut(s)	136, 1249
PstNI	CAGNNNCTG	1 cut(s)	994
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	4 cut(s)	99, 202, 1148, 1602
RsaNI	GTAC	4 cut(s)	98, 201, 1147, 1601
RseI	CAYNNNNRTG	1 cut(s)	1491
SacI	GAGCTC	2 cut(s)	1405, 1591
SatI	GCNGC	1 cut(s)	926
Sau3AI	GATC	3 cut(s)	144, 700, 1820
Sau96I	GGNCC	2 cut(s)	136, 1249
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	5 cut(s)	133, 712, 1043, 1447, 1604
ScrFI	CCNGG	4 cut(s)	36, 156, 840, 1761
SduI	GDGCHC	2 cut(s)	1405, 1591
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	2 cut(s)	136, 1249
SmiMI	CAYNNNNRTG	1 cut(s)	1491
SmlI	CTYRAG	2 cut(s)	17, 1376
SmoI	CTYRAG	2 cut(s)	17, 1376
SphI	GCATGC	1 cut(s)	635
SspMI	CTAG	7 cut(s)	246, 672, 768, 948, 1286, 1592, 1644
SstI	GAGCTC	2 cut(s)	1405, 1591
StyD4I	CCNGG	4 cut(s)	34, 154, 838, 1759
TaaI	ACNGT	5 cut(s)	433, 646, 878, 1217, 1521
TaiI	ACGT	2 cut(s)	861, 1268
TaqI	TCGA	3 cut(s)	8, 716, 889
TatI	WGTACW	3 cut(s)	200, 1146, 1600
TfiI	GAWTC	7 cut(s)	5, 533, 746, 773, 821, 931, 1010
TscAI	CASTG	3 cut(s)	1498, 1526, 1629
TseFI	GTSAC	7 cut(s)	106, 878, 938, 1055, 1271, 1480, 1624
TseI	GCWGC	1 cut(s)	925
Tsp45I	GTSAC	7 cut(s)	106, 878, 938, 1055, 1271, 1480, 1624
TspDTI	ATGAA	4 cut(s)	168, 837, 1355, 1628
TspGWI	ACGGA	3 cut(s)	1043, 1118, 1667
TspRI	CASTG	3 cut(s)	1498, 1526, 1629
VpaK11BI	GGWCC	2 cut(s)	136, 1249
XapI	RAATTY	9 cut(s)	163, 208, 268, 376, 457, 541, 601, 667, 712
XbaI	TCTAGA	1 cut(s)	1591
XceI	RCATGY	4 cut(s)	413, 613, 635, 1030
XspI	CTAG	7 cut(s)	246, 672, 768, 948, 1286, 1592, 1644
ZrmI	AGTACT	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.