Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Reverse (-)

26199380 .. 26204560

Gene Structure 5181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G249700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGGTTTGGAAGAAACTTGCATTTCCAGAGCAGTATTTTTCACCAAGAAGAAAGGTGATTTCTGGGTTTGGTTTGGGGATTGGAGTTTCTATTGTTGTACTTGGTGTACTATTGTTCAGCAACTCATTAAAAAGTCCTACAGTGGAACCTTCGATACAAGGATTCTATAGTGTTGGTCTGAATTCTGGTTCTGTTTCATGGCCTTTCTCATTTTCAAGTAGTTCTGGTTCTTCTTTCTCTCATCGTTCTAGTACTTCAGAAACGCAGGAATCTATTGATTTGGAGCATAAGATTGAAGAAGGAAGGGTTCTGAACAGAACCCATGAAGCAAATTACTCTGTAGTTGCTGGAAATTCAAATTTTGTGGAGCCCAATGGGAAAGGGACGGTTTTGGAGAATACCCATTTTCAAAATTTTACAGAGGAGGTTAAAGATCGAAGCTTTGTGATTGAAGACGAAAAGAATCAACAGAAAAACAGTGATAATGGGTCATTAATTCCTGAAAAGGGTAAAGTTTTGAGTTCAAATGGGGGAGGAACTATAGTAGAGATTGCCCATTTGGGAAACTCCTCTGAGCTTTTGAAAAATGGAAGCTTGCATGGTGAAGAGGGGAGGGTGATTGGGAATTTTAGCCTTTCTGACATAGAAGATGTGCATGCAGAGAAAACAATTGAAGGCAGTTTGTCAAAGAATTCTAGTAATGAGGATGATAAGGTCACAGAAAATAAGAGGAAGAAAAGCGTTCGGGAGACAGCTCATCTAGGAAATTCGAAGGAGAAAAACAAGATCATTGACTATGATTCTCAACTCAGGAAAATGCAGACTGATTCTTATCAGAAATGTGATATATTTTTTGGTAAGTGGGTAAGAGATGATTCGAAGCCATATTATCCTGGAGGTTCTTGCCCATACATTGATAGGGATTTTAATTGTCAACTAAATGGGAGGCCAGATAATGCTTTTATAAAATGGAAATGGCAGCCAAATGAGTGTGACATCCCAAGCCTGAATGCAACCGATTTTCTGGAGAGGTTGAGGGGAAAGAGGTTGGTGTTTGTGGGGGATTCATTGAATAGGAACATGTGGGAGTCTCTGGTGTGTATTCTTCGCAACAGCCTTCGATACAAGAGAAGAGTTCATGAGATTTCGGGAAAGAGTGAATTTAAAAAGAAGGGCTTTTATGCATTCAGATTTGAGGATTATAATTGTTCAGTGGATTTTGTTGCTTCTCCATTCCTTGTTAGGGAATCATCGTTCACTGGTCAAAATGGTTCATTTGAGACATTAAGATTGGATATGATGGACCGGACAACTTCTATGTATCATGATGCTGATGTGATCGTTTTTAACACTGGCCATTGGTGGACTCATGAGAAAACATCTAAAGGGGAAGACTATTACCAAGAAGGCAACTATGTGCATCCCAGACTGAAGGTTCTCGAAGCATACAAGAGGGCTCTCACCACTTGGGCTAGATGGGTTGACAAGAACATTGATGTCAAGCGGACTCAGGTTTTCTTCAGAGGATATTCAGTTACCCATTTCAGCGGAGGGCAATGGAACTCAGGTGGGCAGTGCCACAAAGAAGCAGAGCCAATCTTTAATGAGACTTATTTAGGGAATTACCCTTCAAAGATGAGAGCTCTAGAGCATGTACTTCAAGAAATGAAAACTCCAGTGACATATCTAAACATAAGCAAGCTTACAGATTACAGAAAAGACGGACACCCTTCCATTTACAGAATGAAATACAAGACAGTAGAAGAACAGATTACTGCAGAGCAATCTCAGGATTGCAGCCATTGGTGTTTGCCTGGGGTTCCAGATACTTGGAATGAATTGCTATATGCTTCTCTTTTGAAGGCCAGAAGGGCATCGGTGGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

630

Amino Acids

71.71

Weight (kDa)

7.93

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	965, 1203
AciI	CCGC	2 cut(s)	1504, 1548
AcoI	YGGCCR	1 cut(s)	1354
AcsI	RAATTY	8 cut(s)	181, 352, 358, 412, 625, 691, 766, 1160
AcuI	CTGAAG	3 cut(s)	240, 1451, 1504
AfaI	GTAC	4 cut(s)	99, 108, 253, 1656
AfiI	CCNNNNNNNGG	2 cut(s)	506, 1243
AflIII	ACRYGT	1 cut(s)	1080
AjnI	CCWGG	2 cut(s)	892, 1813
AloI	GAACNNNNNNTCC	2 cut(s)	1238, 1270
AluBI	AGCT	7 cut(s)	441, 577, 594, 755, 1643, 1702, 1887
AluI	AGCT	7 cut(s)	441, 577, 594, 755, 1643, 1702, 1887
Alw21I	GWGCWC	1 cut(s)	1645
Alw26I	GTCTC	4 cut(s)	743, 1095, 1274, 1601
AoxI	GGCC	4 cut(s)	200, 947, 1354, 1863
ApeKI	GCWGC	2 cut(s)	979, 1797
ApoI	RAATTY	8 cut(s)	181, 352, 358, 412, 625, 691, 766, 1160
AseI	ATTAAT	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	1303
AsuHPI	GGTGA	5 cut(s)	33, 67, 614, 628, 1453
AsuII	TTCGAA	2 cut(s)	770, 878
AvaII	GGWCC	1 cut(s)	1303
BalI	TGGCCA	1 cut(s)	1356
BanII	GRGCYC	3 cut(s)	372, 1459, 1645
BbsI	GAAGAC	2 cut(s)	459, 1398
Bbv12I	GWGCWC	1 cut(s)	1645
BbvI	GCAGC	2 cut(s)	991, 1809
BccI	CCATC	2 cut(s)	1294, 1470
BciT130I	CCWGG	2 cut(s)	894, 1815
BcoDI	GTCTC	4 cut(s)	743, 1095, 1274, 1601
BfaI	CTAG	5 cut(s)	249, 696, 761, 1473, 1646
BfmI	CTRYAG	5 cut(s)	138, 166, 339, 540, 1776
BglI	GCCNNNNNGGC	1 cut(s)	1871
BisI	GCNGC	2 cut(s)	980, 1798
BlsI	GCNGC	2 cut(s)	981, 1799
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	894, 1815
Bme18I	GGWCC	1 cut(s)	1303
BmgT120I	GGNCC	1 cut(s)	1303
BmiI	GGNNCC	3 cut(s)	147, 369, 1821
BmrFI	CCNGG	2 cut(s)	894, 1815
BmsI	GCATC	3 cut(s)	1318, 1429, 1883
BpiI	GAAGAC	2 cut(s)	459, 1398
BpmI	CTGGAG	3 cut(s)	915, 1046, 1659
Bpu14I	TTCGAA	2 cut(s)	770, 878
BsaBI	GATNNNNATC	1 cut(s)	831
BsaJI	CCNNGG	1 cut(s)	1814
BsaWI	WCCGGW	1 cut(s)	1305
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 1243
Bse1I	ACTGG	3 cut(s)	1264, 1357, 1676
Bse3DI	GCAATG	1 cut(s)	1562
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	894, 1815
BseDI	CCNNGG	1 cut(s)	1814
BseGI	GGATG	3 cut(s)	712, 996, 1420
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	506, 1243
BseMI	GCAATG	1 cut(s)	1562
BseMII	CTCAG	5 cut(s)	564, 823, 1523, 1578, 1802
BseNI	ACTGG	3 cut(s)	1264, 1357, 1676
BseRI	GAGGAG	2 cut(s)	437, 559
BseXI	GCAGC	2 cut(s)	991, 1809
BshFI	GGCC	4 cut(s)	202, 949, 1356, 1865
BsiHKAI	GWGCWC	1 cut(s)	1645
BsiSI	CCGG	1 cut(s)	1306
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	506, 1243
BsmAI	GTCTC	4 cut(s)	743, 1095, 1274, 1601
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	2 cut(s)	1015, 1184
BsnI	GGCC	4 cut(s)	202, 949, 1356, 1865
Bsp119I	TTCGAA	2 cut(s)	770, 878
Bsp1286I	GDGCHC	3 cut(s)	372, 1459, 1645
Bsp143I	GATC	3 cut(s)	433, 786, 1338
BspACI	CCGC	2 cut(s)	1504, 1548
BspANI	GGCC	4 cut(s)	202, 949, 1356, 1865
BspCNI	CTCAG	5 cut(s)	565, 822, 1522, 1577, 1801
BspHI	TCATGA	3 cut(s)	1138, 1324, 1369
BspLI	GGNNCC	3 cut(s)	147, 369, 1821
BspMAI	CTGCAG	1 cut(s)	1780
BspT104I	TTCGAA	2 cut(s)	770, 878
BsrDI	GCAATG	1 cut(s)	1562
BsrI	ACTGG	3 cut(s)	1264, 1357, 1676
BssECI	CCNNGG	1 cut(s)	1814
BssMI	GATC	3 cut(s)	433, 786, 1338
Bst2UI	CCWGG	2 cut(s)	894, 1815
Bst4CI	ACNGT	4 cut(s)	142, 388, 479, 1759
Bst6I	CTCTTC	2 cut(s)	600, 1126
BstBI	TTCGAA	2 cut(s)	770, 878
BstC8I	GCNNGC	3 cut(s)	596, 657, 1700
BstDEI	CTNAG	5 cut(s)	573, 809, 1509, 1564, 1788
BstF5I	GGATG	3 cut(s)	712, 996, 1420
BstKTI	GATC	3 cut(s)	436, 789, 1341
BstMAI	GTCTC	4 cut(s)	743, 1095, 1274, 1601
BstMBI	GATC	3 cut(s)	433, 786, 1338
BstMWI	GCNNNNNNNGC	1 cut(s)	1871
BstNI	CCWGG	2 cut(s)	894, 1815
BstNSI	RCATGY	3 cut(s)	659, 1084, 1655
BstSCI	CCNGG	2 cut(s)	892, 1813
BstSFI	CTRYAG	5 cut(s)	138, 166, 339, 540, 1776
BstV1I	GCAGC	2 cut(s)	991, 1809
BstV2I	GAAGAC	2 cut(s)	459, 1398
BstXI	CCANNNNNNTGG	1 cut(s)	1830
BsuRI	GGCC	4 cut(s)	202, 949, 1356, 1865
BtsCI	GGATG	3 cut(s)	712, 996, 1420
BtsI	GCAGTG	1 cut(s)	1580
BtsIMutI	CAGTG	7 cut(s)	147, 484, 1218, 1257, 1350, 1580, 1683
Cac8I	GCNNGC	3 cut(s)	596, 657, 1700
CciI	TCATGA	3 cut(s)	1138, 1324, 1369
Cfr13I	GGNCC	1 cut(s)	1303
Csp6I	GTAC	4 cut(s)	98, 107, 252, 1655
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	9 cut(s)	198, 323, 599, 656, 1081, 1139, 1325, 1370, 1652
CviQI	GTAC	4 cut(s)	98, 107, 252, 1655
DdeI	CTNAG	5 cut(s)	573, 809, 1509, 1564, 1788
DpnI	GATC	3 cut(s)	435, 788, 1340
DpnII	GATC	3 cut(s)	433, 786, 1338
DraI	TTTAAA	1 cut(s)	1165
EaeI	YGGCCR	1 cut(s)	1354
Eam1104I	CTCTTC	2 cut(s)	600, 1126
EarI	CTCTTC	2 cut(s)	600, 1126
Ecl136II	GAGCTC	1 cut(s)	1643
Eco24I	GRGCYC	3 cut(s)	372, 1459, 1645
Eco47I	GGWCC	1 cut(s)	1303
Eco53kI	GAGCTC	1 cut(s)	1643
Eco57I	CTGAAG	3 cut(s)	240, 1451, 1504
EcoICRI	GAGCTC	1 cut(s)	1643
EcoRI	GAATTC	2 cut(s)	181, 691
EcoRII	CCWGG	2 cut(s)	892, 1813
EcoT22I	ATGCAT	1 cut(s)	1186
EcoT38I	GRGCYC	3 cut(s)	372, 1459, 1645
FaeI	CATG	9 cut(s)	201, 326, 602, 659, 1084, 1142, 1328, 1373, 1655
FalI	AAGNNNNNCTT	2 cut(s)	1160, 1192
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	9 cut(s)	197, 322, 598, 655, 1080, 1138, 1324, 1369, 1651
Fnu4HI	GCNGC	2 cut(s)	980, 1798
FokI	GGATG	3 cut(s)	719, 983, 1407
FriOI	GRGCYC	3 cut(s)	372, 1459, 1645
Fsp4HI	GCNGC	2 cut(s)	980, 1798
FspBI	CTAG	5 cut(s)	249, 696, 761, 1473, 1646
GluI	GCNGC	2 cut(s)	980, 1798
GsuI	CTGGAG	3 cut(s)	915, 1046, 1659
HaeIII	GGCC	4 cut(s)	202, 949, 1356, 1865
HapII	CCGG	1 cut(s)	1306
Hin1II	CATG	9 cut(s)	201, 326, 602, 659, 1084, 1142, 1328, 1373, 1655
HincII	GTYRAC	2 cut(s)	935, 1483
HindII	GTYRAC	2 cut(s)	935, 1483
HindIII	AAGCTT	3 cut(s)	439, 592, 1700
HpaII	CCGG	1 cut(s)	1306
HphI	GGTGA	5 cut(s)	33, 67, 614, 628, 1453
Hpy166II	GTNNAC	5 cut(s)	107, 935, 1257, 1365, 1483
Hpy188I	TCNGA	8 cut(s)	180, 259, 312, 574, 640, 837, 1190, 1523
Hpy8I	GTNNAC	5 cut(s)	107, 935, 1257, 1365, 1483
HpyCH4III	ACNGT	4 cut(s)	142, 388, 479, 1759
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1871
HpyF3I	CTNAG	5 cut(s)	573, 809, 1509, 1564, 1788
Hsp92II	CATG	9 cut(s)	201, 326, 602, 659, 1084, 1142, 1328, 1373, 1655
Kzo9I	GATC	3 cut(s)	433, 786, 1338
LmnI	GCTCC	2 cut(s)	283, 367
Lsp1109I	GCAGC	2 cut(s)	991, 1809
LweI	GCATC	3 cut(s)	1318, 1429, 1883
MaeI	CTAG	5 cut(s)	249, 696, 761, 1473, 1646
MaeIII	GTNAC	4 cut(s)	715, 992, 1534, 1678
MalI	GATC	3 cut(s)	435, 788, 1340
MboI	GATC	3 cut(s)	433, 786, 1338
MfeI	CAATTG	1 cut(s)	669
MhlI	GDGCHC	3 cut(s)	372, 1459, 1645
MlsI	TGGCCA	1 cut(s)	1356
MluNI	TGGCCA	1 cut(s)	1356
MlyI	GAGTC	3 cut(s)	1097, 1360, 1501
Mox20I	TGGCCA	1 cut(s)	1356
Mph1103I	ATGCAT	1 cut(s)	1186
MscI	TGGCCA	1 cut(s)	1356
MseI	TTAA	8 cut(s)	128, 429, 494, 927, 1164, 1286, 1347, 1602
Msp20I	TGGCCA	1 cut(s)	1356
MspA1I	CMGCKG	1 cut(s)	1548
MspI	CCGG	1 cut(s)	1306
MspR9I	CCNGG	2 cut(s)	894, 1815
MunI	CAATTG	1 cut(s)	669
Mva1269I	GAATGC	2 cut(s)	1015, 1184
MvaI	CCWGG	2 cut(s)	894, 1815
MwoI	GCNNNNNNNGC	1 cut(s)	1871
NdeII	GATC	3 cut(s)	433, 786, 1338
NlaIII	CATG	9 cut(s)	201, 326, 602, 659, 1084, 1142, 1328, 1373, 1655
NlaIV	GGNNCC	3 cut(s)	147, 369, 1821
NmuCI	GTSAC	3 cut(s)	715, 992, 1678
NsiI	ATGCAT	1 cut(s)	1186
NspI	RCATGY	3 cut(s)	659, 1084, 1655
NspV	TTCGAA	2 cut(s)	770, 878
PaeI	GCATGC	1 cut(s)	659
PagI	TCATGA	3 cut(s)	1138, 1324, 1369
PciI	ACATGT	1 cut(s)	1080
PctI	GAATGC	2 cut(s)	1015, 1184
PfeI	GAWTC	8 cut(s)	162, 269, 463, 800, 827, 875, 1064, 1247
PfoI	TCCNGGA	1 cut(s)	892
PkrI	GCNGC	2 cut(s)	981, 1799
PleI	GAGTC	3 cut(s)	1096, 1360, 1501
PpsI	GAGTC	3 cut(s)	1096, 1360, 1501
PscI	ACATGT	1 cut(s)	1080
PshBI	ATTAAT	1 cut(s)	494
PsiI	TTATAA	2 cut(s)	965, 1203
Psp124BI	GAGCTC	1 cut(s)	1645
Psp6I	CCWGG	2 cut(s)	892, 1813
PspGI	CCWGG	2 cut(s)	892, 1813
PspN4I	GGNNCC	3 cut(s)	147, 369, 1821
PspPI	GGNCC	1 cut(s)	1303
PsrI	GAACNNNNNNTAC	4 cut(s)	138, 170, 211, 243
PstI	CTGCAG	1 cut(s)	1780
RsaI	GTAC	4 cut(s)	99, 108, 253, 1656
RsaNI	GTAC	4 cut(s)	98, 107, 252, 1655
SacI	GAGCTC	1 cut(s)	1645
SaqAI	TTAA	8 cut(s)	128, 429, 494, 927, 1164, 1286, 1347, 1602
SatI	GCNGC	2 cut(s)	980, 1798
Sau3AI	GATC	3 cut(s)	433, 786, 1338
Sau96I	GGNCC	1 cut(s)	1303
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	3 cut(s)	1097, 1360, 1501
ScrFI	CCNGG	2 cut(s)	894, 1815
SduI	GDGCHC	3 cut(s)	372, 1459, 1645
SfaNI	GCATC	3 cut(s)	1318, 1429, 1883
SfcI	CTRYAG	5 cut(s)	138, 166, 339, 540, 1776
SfuI	TTCGAA	2 cut(s)	770, 878
SinI	GGWCC	1 cut(s)	1303
SphI	GCATGC	1 cut(s)	659
SsiI	CCGC	2 cut(s)	1504, 1548
SspMI	CTAG	5 cut(s)	249, 696, 761, 1473, 1646
SstI	GAGCTC	1 cut(s)	1645
StyD4I	CCNGG	2 cut(s)	892, 1813
TaaI	ACNGT	4 cut(s)	142, 388, 479, 1759
TaqI	TCGA	6 cut(s)	152, 436, 770, 878, 1120, 1440
TatI	WGTACW	4 cut(s)	97, 106, 251, 1654
TfiI	GAWTC	8 cut(s)	162, 269, 463, 800, 827, 875, 1064, 1247
Tru1I	TTAA	8 cut(s)	128, 429, 494, 927, 1164, 1286, 1347, 1602
Tru9I	TTAA	8 cut(s)	128, 429, 494, 927, 1164, 1286, 1347, 1602
TscAI	CASTG	7 cut(s)	147, 484, 1218, 1264, 1357, 1580, 1683
TseFI	GTSAC	3 cut(s)	715, 992, 1678
TseI	GCWGC	2 cut(s)	979, 1797
Tsp45I	GTSAC	3 cut(s)	715, 992, 1678
TspDTI	ATGAA	8 cut(s)	186, 339, 1056, 1127, 1263, 1682, 1760, 1851
TspGWI	ACGGA	1 cut(s)	1737
TspRI	CASTG	7 cut(s)	147, 484, 1218, 1264, 1357, 1580, 1683
VpaK11BI	GGWCC	1 cut(s)	1303
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	8 cut(s)	181, 352, 358, 412, 625, 691, 766, 1160
XbaI	TCTAGA	1 cut(s)	1645
XceI	RCATGY	3 cut(s)	659, 1084, 1655
XspI	CTAG	5 cut(s)	249, 696, 761, 1473, 1646
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.