Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Forward (+)

55410060 .. 55414556

Gene Structure 4497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG403200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCATTGTGTTTCAGCCATGGATTCCAAGAAGCTAGAGCAGTTTTTCTCACCCAGAAGAAAAGTGGTTTCTGGGTTTAGTTTGGGAATTGGAGCCTCTCTGTTTGTAATCGCCGTACTATTTGTCTCTTACTCCTTAAAGAGTCCTACTGTGGACCAAGGTTTCTATACTGTAAATTCCTCTTTTGTTTCATGGCCTTTCTCGTTTTCAAGCACTGCAAATTCTGTTACTTCAGAAATGCAAGACTCTGCGGACTTGAACAAGACCCAATTGGGGAATTTCACAGAGGAAGTTAAAGATGGAAGCTCTGGGGTTGAAGGAGGAAGGGTGGAGCATAAAGATGGTGAGTTTGGTTCAAATGAGGGAGGGGGTGTTTTGGGGATTTTCCATTTGGGGAATTCCTCTGAGATTTTGAATAATGGAAGCTTGCATGTTGAAGGTGGAGGTGGGAAAGAGACAGTTTTGGAGAAGTCCCAGATGGGGAATTTTACAGAGGCAGTTAAAGATGGAAGCTTTGTGGTTGAGGAAGGAAGAGTTCAACAGAAAGATAATAACTCAGATTCAAGAAATTCCTCTGAGATTTTGAAATTTGAGAGCTTGCATGGTGAAGGTGGGAAGGGAATTGGGAATTTAAGCCTTTCTGGGAAAGAAGATGTGCATGCAGAGAAAACAGTTGAAGGTAGTTTTTCAAAGAATTCTAGTAATGGGGATGGTAAGGTAACAGAAGATCATCAAGGAAATTCAACACAGAAAAATGAAATCATTGAGCTTGATTCTCAAACTTGGGAAATGCCTAGTGACTCTGATAAAAAATGTGATATTTTTGATGGTAAATGGGTGAGAGATGATTCAAAGCCGTACTATCCTGGAGGTTCTTGTCCACACGTTGATAAGGTTTGGAATTGCCACTCCAATCGAAGGCCAGACAGTGCTTTCCTAAAATGGAAATGGCAGCCAAATGGGTGTGATATCCCAAGTTTGAATGCAACTGATTTTCTGGAGAGGTTGAGAGGAAAGAGGTTGGTTTTTGTGGGGGATTCACTGAATAGGAACATGTGGGAGTCTCTTGTGTGCATTCTCCGTCACAGCGTTCCGCACAAGAAAAAGGTATATGAGATTTCGGGAAAGAAGGAATTTAAGAAGAAGGGGATATATGCATTCAGATTTGAGGAGTACAATTGTTCCCTGGATTTTGTGGTTGCTCCATTCCTTGTTAGGGAGTCAACATTCACAGGCAAAAACTGTTCGTTTGAGACATTGAGGTTGGATTTGATGGACCGGACTACAACAACGTATCGTGATGCTGATGTTATAGTTTTTAATACTGGTCATTGGTGGACTCATGATAAAACTTCTAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

454

Amino Acids

50.48

Weight (kDa)

5.95

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	270 - 323	5.2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	324 - 451	1.4e-40	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	251, 1094
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	117, 860, 1175
AfiI	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
AflIII	ACRYGT	2 cut(s)	883, 1053
AjnI	CCWGG	2 cut(s)	865, 1185
AluBI	AGCT	6 cut(s)	34, 306, 426, 513, 597, 769
AluI	AGCT	6 cut(s)	34, 306, 426, 513, 597, 769
Alw26I	GTCTC	4 cut(s)	130, 449, 1068, 1247
AoxI	GGCC	2 cut(s)	194, 920
ApeKI	GCWGC	1 cut(s)	952
AspS9I	GGNCC	2 cut(s)	154, 1276
AsuHPI	GGTGA	4 cut(s)	42, 356, 617, 850
AvaII	GGWCC	2 cut(s)	154, 1276
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	7 cut(s)	293, 335, 472, 500, 704, 821, 1267
BceAI	ACGGC	2 cut(s)	98, 841
BciT130I	CCWGG	2 cut(s)	867, 1187
BcoDI	GTCTC	4 cut(s)	130, 449, 1068, 1247
BfaI	CTAG	4 cut(s)	35, 699, 795, 1356
BisI	GCNGC	1 cut(s)	953
BlsI	GCNGC	1 cut(s)	954
Bme1390I	CCNGG	2 cut(s)	867, 1187
Bme18I	GGWCC	2 cut(s)	154, 1276
BmgT120I	GGNCC	2 cut(s)	154, 1276
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	867, 1187
BmsI	GCATC	1 cut(s)	1291
BpmI	CTGGAG	2 cut(s)	888, 1019
BsaJI	CCNNGG	3 cut(s)	18, 157, 1185
BsaWI	WCCGGW	1 cut(s)	1278
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 357, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
Bse1I	ACTGG	1 cut(s)	1330
BseBI	CCWGG	2 cut(s)	867, 1187
BseDI	CCNNGG	3 cut(s)	18, 157, 1185
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
BseMII	CTCAG	3 cut(s)	396, 567, 570
BseNI	ACTGG	1 cut(s)	1330
BseRI	GAGGAG	1 cut(s)	1184
BseXI	GCAGC	1 cut(s)	964
BshFI	GGCC	2 cut(s)	196, 922
BsiSI	CCGG	1 cut(s)	1279
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
BsmAI	GTCTC	4 cut(s)	130, 449, 1068, 1247
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	3 cut(s)	988, 1074, 1157
BsnI	GGCC	2 cut(s)	196, 922
Bsp143I	GATC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	251, 1094
BspANI	GGCC	2 cut(s)	196, 922
BspCNI	CTCAG	3 cut(s)	397, 568, 569
BspHI	TCATGA	1 cut(s)	1342
BspLI	GGNNCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	1330
BssECI	CCNNGG	3 cut(s)	18, 157, 1185
BssMI	GATC	1 cut(s)	727
BssT1I	CCWWGG	2 cut(s)	18, 157
Bst2UI	CCWGG	2 cut(s)	867, 1187
Bst4CI	ACNGT	6 cut(s)	151, 172, 460, 673, 929, 1244
Bst6I	CTCTTC	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	428, 599, 660
BstDEI	CTNAG	3 cut(s)	405, 556, 576
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	715
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	4 cut(s)	130, 449, 1068, 1247
BstMBI	GATC	1 cut(s)	727
BstNI	CCWGG	2 cut(s)	867, 1187
BstNSI	RCATGY	3 cut(s)	434, 662, 1057
BstSCI	CCNGG	2 cut(s)	865, 1185
BstV1I	GCAGC	1 cut(s)	964
BsuRI	GGCC	2 cut(s)	196, 922
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 934, 1040
Cac8I	GCNNGC	3 cut(s)	428, 599, 660
CciI	TCATGA	1 cut(s)	1342
Cfr13I	GGNCC	2 cut(s)	154, 1276
Csp6I	GTAC	3 cut(s)	116, 859, 1174
CviAII	CATG	7 cut(s)	19, 192, 431, 602, 659, 1054, 1343
CviQI	GTAC	3 cut(s)	116, 859, 1174
DdeI	CTNAG	3 cut(s)	405, 556, 576
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	18, 157
Eco32I	GATATC	1 cut(s)	970
Eco47I	GGWCC	2 cut(s)	154, 1276
Eco57I	CTGAAG	1 cut(s)	216
EcoRI	GAATTC	2 cut(s)	397, 694
EcoRII	CCWGG	2 cut(s)	865, 1185
EcoRV	GATATC	1 cut(s)	970
EcoT14I	CCWWGG	2 cut(s)	18, 157
EcoT22I	ATGCAT	2 cut(s)	6, 1159
ErhI	CCWWGG	2 cut(s)	18, 157
FaeI	CATG	7 cut(s)	22, 195, 434, 605, 662, 1057, 1346
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	7 cut(s)	18, 191, 430, 601, 658, 1053, 1342
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	1 cut(s)	953
FspBI	CTAG	4 cut(s)	35, 699, 795, 1356
GluI	GCNGC	1 cut(s)	953
GsuI	CTGGAG	2 cut(s)	888, 1019
HaeIII	GGCC	2 cut(s)	196, 922
HapII	CCGG	1 cut(s)	1279
Hin1II	CATG	7 cut(s)	22, 195, 434, 605, 662, 1057, 1346
HincII	GTYRAC	1 cut(s)	1224
HindII	GTYRAC	1 cut(s)	1224
HindIII	AAGCTT	2 cut(s)	424, 511
HpaII	CCGG	1 cut(s)	1279
HphI	GGTGA	4 cut(s)	42, 356, 617, 850
Hpy166II	GTNNAC	4 cut(s)	154, 881, 1224, 1338
Hpy188I	TCNGA	6 cut(s)	235, 406, 559, 577, 805, 1163
Hpy188III	TCNNGA	6 cut(s)	564, 998, 1122, 1298, 1343, 1356
Hpy8I	GTNNAC	4 cut(s)	154, 881, 1224, 1338
HpyCH4III	ACNGT	6 cut(s)	151, 172, 460, 673, 929, 1244
HpyCH4IV	ACGT	2 cut(s)	885, 1292
HpyF3I	CTNAG	3 cut(s)	405, 556, 576
HpySE526I	ACGT	2 cut(s)	885, 1292
Hsp92II	CATG	7 cut(s)	22, 195, 434, 605, 662, 1057, 1346
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	92, 331, 1207
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	1 cut(s)	1291
MaeI	CTAG	4 cut(s)	35, 699, 795, 1356
MaeII	ACGT	2 cut(s)	885, 1292
MaeIII	GTNAC	4 cut(s)	226, 718, 797, 1082
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	5 cut(s)	69, 543, 662, 737, 1153
MfeI	CAATTG	2 cut(s)	269, 1177
MlyI	GAGTC	6 cut(s)	151, 239, 794, 1070, 1229, 1333
MmeI	TCCRAC	1 cut(s)	1245
Mph1103I	ATGCAT	2 cut(s)	6, 1159
MseI	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	1279
MspR9I	CCNGG	2 cut(s)	867, 1187
MunI	CAATTG	2 cut(s)	269, 1177
Mva1269I	GAATGC	3 cut(s)	988, 1074, 1157
MvaI	CCWGG	2 cut(s)	867, 1187
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	7 cut(s)	22, 195, 434, 605, 662, 1057, 1346
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	797, 1082
NsiI	ATGCAT	2 cut(s)	6, 1159
NspI	RCATGY	3 cut(s)	434, 662, 1057
PaeI	GCATGC	1 cut(s)	662
PagI	TCATGA	1 cut(s)	1342
PciI	ACATGT	1 cut(s)	1053
PctI	GAATGC	3 cut(s)	988, 1074, 1157
PfeI	GAWTC	5 cut(s)	23, 560, 773, 848, 1037
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	6 cut(s)	150, 239, 794, 1069, 1228, 1333
PpsI	GAGTC	6 cut(s)	150, 239, 794, 1069, 1228, 1333
PscI	ACATGT	1 cut(s)	1053
Psp6I	CCWGG	2 cut(s)	865, 1185
PspGI	CCWGG	2 cut(s)	865, 1185
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	154, 1276
RsaI	GTAC	3 cut(s)	117, 860, 1175
RsaNI	GTAC	3 cut(s)	116, 859, 1174
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	2 cut(s)	154, 1276
SchI	GAGTC	6 cut(s)	151, 239, 794, 1070, 1229, 1333
ScrFI	CCNGG	2 cut(s)	867, 1187
SfaNI	GCATC	1 cut(s)	1291
SinI	GGWCC	2 cut(s)	154, 1276
SmiMI	CAYNNNNRTG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	662
SsiI	CCGC	2 cut(s)	251, 1094
SspMI	CTAG	4 cut(s)	35, 699, 795, 1356
StyD4I	CCNGG	2 cut(s)	865, 1185
StyI	CCWWGG	2 cut(s)	18, 157
TaaI	ACNGT	6 cut(s)	151, 172, 460, 673, 929, 1244
TaiI	ACGT	2 cut(s)	888, 1295
TaqI	TCGA	1 cut(s)	916
TatI	WGTACW	1 cut(s)	1173
TfiI	GAWTC	5 cut(s)	23, 560, 773, 848, 1037
Tru1I	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
Tru9I	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
TscAI	CASTG	3 cut(s)	220, 934, 1047
TseFI	GTSAC	2 cut(s)	797, 1082
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	2 cut(s)	797, 1082
TspDTI	ATGAA	2 cut(s)	180, 771
TspGWI	ACGGA	1 cut(s)	1070
TspRI	CASTG	3 cut(s)	220, 934, 1047
VpaK11BI	GGWCC	2 cut(s)	154, 1276
XbaI	TCTAGA	1 cut(s)	1355
XceI	RCATGY	3 cut(s)	434, 662, 1057
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	4 cut(s)	35, 699, 795, 1356
Zsp2I	ATGCAT	2 cut(s)	6, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.