RchiOBHm_Chr4g0442021

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
63740918 .. 63744008
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40980

Sequence Viewer

Length: 1863 bp
ATGCATTGTGTTTCAGCCATGGATTCCAAGAAGCTAGAGCAGTTTTTCTCACCCAGAAGAAAAGTGGTTTCTGGGTTTAGTTTCGGAATTGGAGCCTCTCTGTTTGTAATCGCCGTACTGTTTGTCTCTTACTCCTTAAAGAGTCCTACTGTGGACCAAGGTTTCTATACTGTAAATTCCTCTTTTGTTTCTTGGCCTTTCTCGTTTTCAAGCACTGCAAATGCTGTTACTTCAGAAATGCAGGACTCTGTGGACTTGAACAAGACCCAATTGGGGAATTTCACAGAGGAAGTTAAAGATGGAAGCTCTGGGGTTGAAGGAGGAAGGGTGGAGCATAAAGATGGTGAGTTTGGTTCAAATGAGGGAGGGGGTGTTTTGGGGATTTTCCATTTGGGGAATTCCTCTGAGATTTTGAATAATGGAAGCTTGCATGTTGAAGGTGGAGGTGGGAAAGAGACAGTTTTGGAGAAGACCCAGATGGGGAATTTTACAGAGGCAGTTAAAGATGGAAGCTTTGTGGTTGAGGAAGGAAGAGTTCAACAGAAAGATAATAACTCAGATTCAAGAAACTCCTCTGAGATTTTGAAATTTGAGAGCTTGCATGGTGAAGGTGGGAAGGGAATTGGGAATTTAAGCCTTTCTAAGAAAGAAGATGTGCATGAAGAGAAAACAGTTGAAGGTAGTTTTTCAAAGAATTCTAGTAATGGGGATGGTAAGGTAACAGAAGATCATCAAGGAAATTCAACACAGAAAAATGAAATCATTGAGCTTGATTCTCAAACTTGGGAAATGCCTAGTGACTCTGATAAAAAATGTGATATTTTTGATGGTAAATGGGTGAGAGATGATTCAAAGCCGTACTATCCTGGAGGTTCTTGTCCACACGTTGATAAGGTTTGGAATTGCCACTCCAATCGAAGGCCAGACAGTGCTTTCCTAAAATGGAAATGGCAGCCAAATGGGTGTGATATCCCAAGTTTGAATGCAACTGATTTTCTGGAGAGGTTGAGAGGAAAGAGGTTGGTTTTTGTGGGGGATTCACTGAATAGGAACATGTGGGAGTCTCTTGTGTGCATTCTCCGTCACAGCGTTCCGCACAAGAAAAAGGTATATGAGATTTCGGGAAAGAAGGAATTTAAGAAGAAGGGGATATATGCATTCAGATTTGAGGAGTACAATTGTTCTCTGGATTTTGTGGTTGCTCCATTCCTTGTTAGGGAGTCAACATTCACAGGCAAAAACGGTTCGTTTGAGACATTGAGGTTGGATTTGATGGACCGGACTACAACAACGTATCGTGATGCTGATGTTATAGTTTTTAATACTGGTCATTGGTGGACTCATGAGAAAACTTCTAGAGGAGAAGACTACTACCAAGAAGGCAACTATGTGCATCCAAGGCTCAAGGCTCTTGAAGCATACAAGAGAGCTCTCACCACTTGGGCGAGATGGGTGGACAGATACATCAATGCCAACAGGACTCGGGTTTTCTTCAGAGGATATTCAGTCACCCATTTCAGTGGAGGGCAATGGAACTCAGGTGGACAGTGCCACAAAGAAACAGAACCAATCTTTAATGAGACTTATCTAACGCATTACCCTTCGAAAATGAGAGCTCTAGAGAGTGTACTTAAAGAAATGAAAACTCCAGTGACATATCTTAACATTAGTAGGCTTACGGATTATAGAAAAGACGGACACCCTTCCATTTACAGAACGATATACAAGACAAAGGAAGAACAAATTGCAGCTGAACAATCTCAGGATTGCAGTCATTGGTGCTTGCCTGGGGTTCCGGATACTTGGAATGAATTGTTATACGCTTTGCTGCTGCAGACCGGATGGGGATCAGGGCAAAAATGA

Protein Analysis

620

Amino Acids

70.11

Weight (kDa)

6.46

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 270 - 323 8e-21 PMR5 N terminal Domain
PC-Esterase PF13839 324 - 608 2.3e-101 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1795
AciI CCGC 1 cut(s) 1094
AclWI GGATC 1 cut(s) 1855
AcsI RAATTY 9 cut(s) 175, 277, 397, 484, 587, 628, 694, 739, 1133
AcuI CTGAAG 2 cut(s) 216, 1477
AfaI GTAC 4 cut(s) 117, 860, 1175, 1629
AfiI CCNNNNNNNGG 4 cut(s) 273, 480, 918, 1216
AflIII ACRYGT 2 cut(s) 883, 1053
AjnI CCWGG 2 cut(s) 865, 1786
AluBI AGCT 9 cut(s) 34, 306, 426, 513, 597, 769, 1430, 1616, 1751
AluI AGCT 9 cut(s) 34, 306, 426, 513, 597, 769, 1430, 1616, 1751
Alw21I GWGCWC 2 cut(s) 1432, 1618
Alw26I GTCTC 5 cut(s) 130, 449, 1068, 1247, 1574
AlwI GGATC 1 cut(s) 1855
Ama87I CYCGRG 1 cut(s) 1482
Aor13HI TCCGGA 1 cut(s) 1795
AoxI GGCC 2 cut(s) 194, 920
ApeKI GCWGC 4 cut(s) 952, 1748, 1828, 1831
ApoI RAATTY 9 cut(s) 175, 277, 397, 484, 587, 628, 694, 739, 1133
AspS9I GGNCC 2 cut(s) 154, 1276
AsuHPI GGTGA 6 cut(s) 42, 356, 617, 850, 1426, 1501
AsuII TTCGAA 1 cut(s) 1604
AvaI CYCGRG 1 cut(s) 1482
AvaII GGWCC 2 cut(s) 154, 1276
BanII GRGCYC 2 cut(s) 1432, 1618
BbsI GAAGAC 2 cut(s) 476, 1371
Bbv12I GWGCWC 2 cut(s) 1432, 1618
BbvI GCAGC 4 cut(s) 964, 1760, 1815, 1818
BccI CCATC 9 cut(s) 293, 335, 472, 500, 704, 821, 1267, 1443, 1836
BceAI ACGGC 2 cut(s) 98, 841
BciT130I CCWGG 2 cut(s) 867, 1788
BciVI GTATCC 1 cut(s) 1792
BcoDI GTCTC 5 cut(s) 130, 449, 1068, 1247, 1574
BfaI CTAG 5 cut(s) 35, 699, 795, 1356, 1619
BfmI CTRYAG 1 cut(s) 1832
BfuI GTATCC 1 cut(s) 1792
BisI GCNGC 4 cut(s) 953, 1749, 1829, 1832
BlsI GCNGC 4 cut(s) 954, 1750, 1830, 1833
Bme1390I CCNGG 2 cut(s) 867, 1788
Bme18I GGWCC 2 cut(s) 154, 1276
BmeT110I CYCGRG 1 cut(s) 1482
BmgT120I GGNCC 2 cut(s) 154, 1276
BmiI GGNNCC 2 cut(s) 94, 1794
BmrFI CCNGG 2 cut(s) 867, 1788
BmsI GCATC 2 cut(s) 1291, 1402
BpiI GAAGAC 2 cut(s) 476, 1371
BpmI CTGGAG 3 cut(s) 888, 1019, 1632
Bpu14I TTCGAA 1 cut(s) 1604
BpuEI CTTGAG 1 cut(s) 1388
BsaBI GATNNNNATC 1 cut(s) 1846
BsaJI CCNNGG 4 cut(s) 18, 157, 1397, 1787
BsaWI WCCGGW 3 cut(s) 1278, 1795, 1838
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 357, 387
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 480, 918, 1216
Bse1I ACTGG 2 cut(s) 1330, 1649
Bse3DI GCAATG 1 cut(s) 1535
Bse8I GATNNNNATC 1 cut(s) 1846
BseAI TCCGGA 1 cut(s) 1795
BseBI CCWGG 2 cut(s) 867, 1788
BseDI CCNNGG 4 cut(s) 18, 157, 1397, 1787
BseGI GGATG 3 cut(s) 715, 1393, 1847
BseJI GATNNNNATC 1 cut(s) 1846
BseLI CCNNNNNNNGG 4 cut(s) 273, 480, 918, 1216
BseMI GCAATG 1 cut(s) 1535
BseMII CTCAG 5 cut(s) 396, 567, 570, 1551, 1775
BseNI ACTGG 2 cut(s) 1330, 1649
BseRI GAGGAG 3 cut(s) 562, 1184, 1374
BseXI GCAGC 4 cut(s) 964, 1760, 1815, 1818
BshFI GGCC 2 cut(s) 196, 922
BsiHKAI GWGCWC 2 cut(s) 1432, 1618
BsiHKCI CYCGRG 1 cut(s) 1482
BsiSI CCGG 3 cut(s) 1279, 1796, 1839
BslI CCNNNNNNNGG 4 cut(s) 273, 480, 918, 1216
BsmAI GTCTC 5 cut(s) 130, 449, 1068, 1247, 1574
BsmI GAATGC 3 cut(s) 988, 1074, 1157
BsnI GGCC 2 cut(s) 196, 922
BsoBI CYCGRG 1 cut(s) 1482
Bsp119I TTCGAA 1 cut(s) 1604
Bsp1286I GDGCHC 2 cut(s) 1432, 1618
Bsp13I TCCGGA 1 cut(s) 1795
Bsp143I GATC 2 cut(s) 727, 1847
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 1094
BspANI GGCC 2 cut(s) 196, 922
BspCNI CTCAG 5 cut(s) 397, 568, 569, 1550, 1774
BspEI TCCGGA 1 cut(s) 1795
BspHI TCATGA 1 cut(s) 1342
BspLI GGNNCC 2 cut(s) 94, 1794
BspMAI CTGCAG 1 cut(s) 1836
BspPI GGATC 1 cut(s) 1855
BspT104I TTCGAA 1 cut(s) 1604
BsrDI GCAATG 1 cut(s) 1535
BsrI ACTGG 2 cut(s) 1330, 1649
BssECI CCNNGG 4 cut(s) 18, 157, 1397, 1787
BssMI GATC 2 cut(s) 727, 1847
BssT1I CCWWGG 3 cut(s) 18, 157, 1397
Bst2UI CCWGG 2 cut(s) 867, 1788
Bst4CI ACNGT 8 cut(s) 120, 151, 172, 460, 673, 929, 1244, 1548
Bst6I CTCTTC 2 cut(s) 526, 657
BstBI TTCGAA 1 cut(s) 1604
BstC8I GCNNGC 3 cut(s) 428, 599, 1784
BstDEI CTNAG 6 cut(s) 405, 556, 576, 642, 1537, 1761
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 3 cut(s) 715, 1393, 1847
BstKTI GATC 2 cut(s) 730, 1850
BstMAI GTCTC 5 cut(s) 130, 449, 1068, 1247, 1574
BstMBI GATC 2 cut(s) 727, 1847
BstMWI GCNNNNNNNGC 2 cut(s) 1399, 1415
BstNI CCWGG 2 cut(s) 867, 1788
BstNSI RCATGY 2 cut(s) 434, 1057
BstSCI CCNGG 2 cut(s) 865, 1786
BstSFI CTRYAG 1 cut(s) 1832
BstV1I GCAGC 4 cut(s) 964, 1760, 1815, 1818
BstV2I GAAGAC 2 cut(s) 476, 1371
BstXI CCANNNNNNTGG 1 cut(s) 1520
BsuI GTATCC 1 cut(s) 1792
BsuRI GGCC 2 cut(s) 196, 922
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 3 cut(s) 715, 1393, 1847
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 6 cut(s) 213, 934, 1040, 1525, 1553, 1656
Cac8I GCNNGC 3 cut(s) 428, 599, 1784
CciI TCATGA 1 cut(s) 1342
Cfr13I GGNCC 2 cut(s) 154, 1276
Csp6I GTAC 4 cut(s) 116, 859, 1174, 1628
CviAII CATG 6 cut(s) 19, 431, 602, 659, 1054, 1343
CviQI GTAC 4 cut(s) 116, 859, 1174, 1628
DdeI CTNAG 6 cut(s) 405, 556, 576, 642, 1537, 1761
DpnI GATC 2 cut(s) 729, 1849
DpnII GATC 2 cut(s) 727, 1847
Eam1104I CTCTTC 2 cut(s) 526, 657
EarI CTCTTC 2 cut(s) 526, 657
Ecl136II GAGCTC 2 cut(s) 1430, 1616
Eco130I CCWWGG 3 cut(s) 18, 157, 1397
Eco24I GRGCYC 2 cut(s) 1432, 1618
Eco32I GATATC 1 cut(s) 970
Eco47I GGWCC 2 cut(s) 154, 1276
Eco53kI GAGCTC 2 cut(s) 1430, 1616
Eco57I CTGAAG 2 cut(s) 216, 1477
Eco88I CYCGRG 1 cut(s) 1482
EcoICRI GAGCTC 2 cut(s) 1430, 1616
EcoRI GAATTC 2 cut(s) 397, 694
EcoRII CCWGG 2 cut(s) 865, 1786
EcoRV GATATC 1 cut(s) 970
EcoT14I CCWWGG 3 cut(s) 18, 157, 1397
EcoT22I ATGCAT 2 cut(s) 6, 1159
EcoT38I GRGCYC 2 cut(s) 1432, 1618
ErhI CCWWGG 3 cut(s) 18, 157, 1397
FaeI CATG 6 cut(s) 22, 434, 605, 662, 1057, 1346
FatI CATG 6 cut(s) 18, 430, 601, 658, 1053, 1342
Fnu4HI GCNGC 4 cut(s) 953, 1749, 1829, 1832
FokI GGATG 3 cut(s) 722, 1380, 1854
FriOI GRGCYC 2 cut(s) 1432, 1618
Fsp4HI GCNGC 4 cut(s) 953, 1749, 1829, 1832
FspBI CTAG 5 cut(s) 35, 699, 795, 1356, 1619
GluI GCNGC 4 cut(s) 953, 1749, 1829, 1832
GsuI CTGGAG 3 cut(s) 888, 1019, 1632
HaeIII GGCC 2 cut(s) 196, 922
HapII CCGG 3 cut(s) 1279, 1796, 1839
Hin1II CATG 6 cut(s) 22, 434, 605, 662, 1057, 1346
HincII GTYRAC 1 cut(s) 1224
HindII GTYRAC 1 cut(s) 1224
HindIII AAGCTT 2 cut(s) 424, 511
HpaII CCGG 3 cut(s) 1279, 1796, 1839
HphI GGTGA 6 cut(s) 42, 356, 617, 850, 1426, 1501
Hpy166II GTNNAC 8 cut(s) 154, 253, 881, 1224, 1338, 1456, 1544, 1628
Hpy188I TCNGA 8 cut(s) 86, 235, 406, 559, 577, 805, 1163, 1496
Hpy8I GTNNAC 8 cut(s) 154, 253, 881, 1224, 1338, 1456, 1544, 1628
HpyCH4III ACNGT 8 cut(s) 120, 151, 172, 460, 673, 929, 1244, 1548
HpyCH4IV ACGT 2 cut(s) 885, 1292
HpyF10VI GCNNNNNNNGC 2 cut(s) 1399, 1415
HpyF3I CTNAG 6 cut(s) 405, 556, 576, 642, 1537, 1761
HpySE526I ACGT 2 cut(s) 885, 1292
Hsp92II CATG 6 cut(s) 22, 434, 605, 662, 1057, 1346
Kpn2I TCCGGA 1 cut(s) 1795
Kzo9I GATC 2 cut(s) 727, 1847
LmnI GCTCC 3 cut(s) 92, 331, 1207
Lsp1109I GCAGC 4 cut(s) 964, 1760, 1815, 1818
LweI GCATC 2 cut(s) 1291, 1402
MaeI CTAG 5 cut(s) 35, 699, 795, 1356, 1619
MaeII ACGT 2 cut(s) 885, 1292
MaeIII GTNAC 6 cut(s) 226, 718, 797, 1082, 1507, 1651
MalI GATC 2 cut(s) 729, 1849
MboI GATC 2 cut(s) 727, 1847
MfeI CAATTG 2 cut(s) 269, 1177
MhlI GDGCHC 2 cut(s) 1432, 1618
MlyI GAGTC 7 cut(s) 151, 239, 794, 1070, 1229, 1333, 1474
MmeI TCCRAC 1 cut(s) 1245
Mph1103I ATGCAT 2 cut(s) 6, 1159
MroI TCCGGA 1 cut(s) 1795
MseI TTAA 9 cut(s) 137, 294, 501, 632, 1137, 1320, 1575, 1632, 1662
MslI CAYNNNNRTG 2 cut(s) 339, 1518
MspA1I CMGCKG 1 cut(s) 1751
MspI CCGG 3 cut(s) 1279, 1796, 1839
MspR9I CCNGG 2 cut(s) 867, 1788
MunI CAATTG 2 cut(s) 269, 1177
Mva1269I GAATGC 3 cut(s) 988, 1074, 1157
MvaI CCWGG 2 cut(s) 867, 1788
MwoI GCNNNNNNNGC 2 cut(s) 1399, 1415
NcoI CCATGG 1 cut(s) 18
NdeII GATC 2 cut(s) 727, 1847
NlaIII CATG 6 cut(s) 22, 434, 605, 662, 1057, 1346
NlaIV GGNNCC 2 cut(s) 94, 1794
NmuCI GTSAC 4 cut(s) 797, 1082, 1507, 1651
NsiI ATGCAT 2 cut(s) 6, 1159
NspI RCATGY 2 cut(s) 434, 1057
NspV TTCGAA 1 cut(s) 1604
PagI TCATGA 1 cut(s) 1342
PciI ACATGT 1 cut(s) 1053
PctI GAATGC 3 cut(s) 988, 1074, 1157
PfeI GAWTC 5 cut(s) 23, 560, 773, 848, 1037
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 4 cut(s) 954, 1750, 1830, 1833
PleI GAGTC 7 cut(s) 150, 239, 794, 1069, 1228, 1333, 1474
PpsI GAGTC 7 cut(s) 150, 239, 794, 1069, 1228, 1333, 1474
PscI ACATGT 1 cut(s) 1053
Psp124BI GAGCTC 2 cut(s) 1432, 1618
Psp6I CCWGG 2 cut(s) 865, 1786
PspGI CCWGG 2 cut(s) 865, 1786
PspN4I GGNNCC 2 cut(s) 94, 1794
PspPI GGNCC 2 cut(s) 154, 1276
PstI CTGCAG 1 cut(s) 1836
PvuII CAGCTG 1 cut(s) 1751
RsaI GTAC 4 cut(s) 117, 860, 1175, 1629
RsaNI GTAC 4 cut(s) 116, 859, 1174, 1628
RseI CAYNNNNRTG 2 cut(s) 339, 1518
SacI GAGCTC 2 cut(s) 1432, 1618
SaqAI TTAA 9 cut(s) 137, 294, 501, 632, 1137, 1320, 1575, 1632, 1662
SatI GCNGC 4 cut(s) 953, 1749, 1829, 1832
Sau3AI GATC 2 cut(s) 727, 1847
Sau96I GGNCC 2 cut(s) 154, 1276
SchI GAGTC 7 cut(s) 151, 239, 794, 1070, 1229, 1333, 1474
ScrFI CCNGG 2 cut(s) 867, 1788
SduI GDGCHC 2 cut(s) 1432, 1618
SfaNI GCATC 2 cut(s) 1291, 1402
SfcI CTRYAG 1 cut(s) 1832
SfuI TTCGAA 1 cut(s) 1604
SinI GGWCC 2 cut(s) 154, 1276
SmiMI CAYNNNNRTG 2 cut(s) 339, 1518
SmlI CTYRAG 1 cut(s) 1403
SmoI CTYRAG 1 cut(s) 1403
SsiI CCGC 1 cut(s) 1094
SspMI CTAG 5 cut(s) 35, 699, 795, 1356, 1619
SstI GAGCTC 2 cut(s) 1432, 1618
StyD4I CCNGG 2 cut(s) 865, 1786
StyI CCWWGG 3 cut(s) 18, 157, 1397
TaaI ACNGT 8 cut(s) 120, 151, 172, 460, 673, 929, 1244, 1548
TaiI ACGT 2 cut(s) 888, 1295
TaqI TCGA 2 cut(s) 916, 1604
TatI WGTACW 2 cut(s) 1173, 1627
TfiI GAWTC 5 cut(s) 23, 560, 773, 848, 1037
Tru1I TTAA 9 cut(s) 137, 294, 501, 632, 1137, 1320, 1575, 1632, 1662
Tru9I TTAA 9 cut(s) 137, 294, 501, 632, 1137, 1320, 1575, 1632, 1662
TscAI CASTG 6 cut(s) 220, 934, 1047, 1525, 1553, 1656
TseFI GTSAC 4 cut(s) 797, 1082, 1507, 1651
TseI GCWGC 4 cut(s) 952, 1748, 1828, 1831
Tsp45I GTSAC 4 cut(s) 797, 1082, 1507, 1651
TspDTI ATGAA 4 cut(s) 675, 771, 1655, 1824
TspGWI ACGGA 3 cut(s) 1070, 1694, 1710
TspRI CASTG 6 cut(s) 220, 934, 1047, 1525, 1553, 1656
VpaK11BI GGWCC 2 cut(s) 154, 1276
XapI RAATTY 9 cut(s) 175, 277, 397, 484, 587, 628, 694, 739, 1133
XbaI TCTAGA 2 cut(s) 1355, 1618
XceI RCATGY 2 cut(s) 434, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 5 cut(s) 35, 699, 795, 1356, 1619
Zsp2I ATGCAT 2 cut(s) 6, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.