Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Reverse (-)

55230791 .. 55233115

Gene Structure 2325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG329000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTTTTAAAGAAACTAGAGCAGTTTTTCTCACCAAAAGGAAACTTAATTTCTGGGTTTGTTTTGGGAATTGGAGTCGTTCTCATTGTACTTTTTGTGAGCAGCTCCTTAAAGAGTAGTAGTCCTACACCTACAGTAGAGGAACAGGGGCTTTATAATGTTTTTGTAAATTCCTCTTTTGTTTCAACTACTGCACATTCCATTGCCCCAGAATTGCAGAGTTCTACTGGAGAATCAAATGATTCTGTAATTGCTGGAGTAGACGAAAAATTTGTGGAGGGCAATGAGAATGGTACGATGGTCTTCCAGAAGGCCCAGTTGGGAAATATTACAGAGGAAGTTGACGATAGAATAAGCTTTTGGGTTGAAGAAGAAAGTGTCCAACTGAAAGATGATAGCTTTGATTCATATGAGGAAGGAAGTGTTCTAGGGATTGCCCAGTTGGGGAATGTTACAGAGCAAGTTAAAGGTGAAAGCTTAGGGGTTGAAGAAGGAAGTGTTCGACAAAAAGATGGCAACTTTGATTCAAATGGTGAAGGAGGGATTGCCCATTTGGGGAATTCCTCTGAGATTTTGGAATTTGGAAGATTGCATGGTGCAGGTGGGAAAGCAACAGGGAAATCAAGCGTTGCTGGCAAAGAGGAAAGAGTTGAAGCTAGTTTTTCAAACAATTCTAGGAGTGGGAATGGCATGGTCACAGAAGATGTAAAAATTGAAATGATTGGCATTGATTCTCAAACTTGGGAAATGCAGAGTGATGATGACTCTTATCAGAAATGTGATATTTATGATGGTAAATGGGTAAGAGATGATTCCATGCCATACTATCCTGGAGGTTCTTGTCCGCACATTGATAGGGATTTTAATTGTCACCTCAATCGGAGGCCGGACGATGAGTTTTTAAAATGGAAATGGCAGCCATATGGGTGCGACATCTCAAGTCTGAATGCAACTGATTTTCTGGAGAGGTTGAGGGGAAAGAGGCTGGTTTTTGTGGGAGATTCGCTGAATAGGAACATGTGGGAGTCTCTGGTGTGCATTCTACGCCACAGAGTCCGACAGAAGAAAAAAGTTTATGAGCTTTCAGGAAAGTCGCAATTTAAGAAGAGGGGCATTTATTCATTCAAGTTTGAGGAATACAATTGTTTTGTGGAATGTGTTGGTTCACCATTTCTTGTTAGGCAATCATCATTCGCCGGTAAAGAGACCTTGAGGTTGGATTTGATGGACCAGACCACATCGAAGTATCGTGATGCTGATATTAGTTTTCAACACTGCCCACTGGTGGAATTACTGGAAAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

435

Amino Acids

48.54

Weight (kDa)

4.9

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	258 - 311	3.1e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	314 - 421	7.2e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	1 cut(s)	845
AcsI	RAATTY	4 cut(s)	169, 269, 559, 578
AfaI	GTAC	2 cut(s)	90, 295
AfiI	CCNNNNNNNGG	3 cut(s)	444, 555, 1285
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	9 cut(s)	186, 368, 488, 528, 653, 666, 716, 1126, 1271
AjnI	CCWGG	1 cut(s)	829
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 343, 375
AluBI	AGCT	7 cut(s)	105, 357, 399, 477, 656, 1081, 1305
AluI	AGCT	7 cut(s)	105, 357, 399, 477, 656, 1081, 1305
Alw26I	GTCTC	2 cut(s)	1032, 1199
AoxI	GGCC	2 cut(s)	312, 884
ApeKI	GCWGC	2 cut(s)	102, 916
ApoI	RAATTY	4 cut(s)	169, 269, 559, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	2 cut(s)	313, 1228
AsuHPI	GGTGA	5 cut(s)	24, 482, 545, 863, 1158
AvaII	GGWCC	1 cut(s)	1228
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	114, 928
BccI	CCATC	4 cut(s)	292, 506, 785, 1219
BciT130I	CCWGG	1 cut(s)	831
BcoDI	GTCTC	2 cut(s)	1032, 1199
BfaI	CTAG	5 cut(s)	17, 428, 657, 675, 1306
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	103, 917
BlsI	GCNGC	2 cut(s)	104, 918
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	1 cut(s)	1228
BmgT120I	GGNCC	2 cut(s)	313, 1228
BmrFI	CCNGG	1 cut(s)	831
BmrI	ACTGGG	2 cut(s)	310, 433
BmsI	GCATC	1 cut(s)	1243
BmuI	ACTGGG	2 cut(s)	310, 433
BpiI	GAAGAC	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	4 cut(s)	249, 276, 852, 983
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	2 cut(s)	922, 1231
BsaI	GGTCTC	1 cut(s)	1199
Bsc4I	CCNNNNNNNGG	3 cut(s)	444, 555, 1285
Bse118I	RCCGGY	1 cut(s)	1196
Bse1I	ACTGG	5 cut(s)	232, 316, 439, 1287, 1299
Bse3DI	GCAATG	2 cut(s)	201, 289
BseBI	CCWGG	1 cut(s)	831
BseLI	CCNNNNNNNGG	3 cut(s)	444, 555, 1285
BseMI	GCAATG	2 cut(s)	201, 289
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	5 cut(s)	232, 316, 439, 1287, 1299
BseXI	GCAGC	2 cut(s)	114, 928
BsgI	GTGCAG	2 cut(s)	177, 618
BshFI	GGCC	2 cut(s)	314, 886
BsiSI	CCGG	2 cut(s)	887, 1197
BslI	CCNNNNNNNGG	3 cut(s)	444, 555, 1285
BsmAI	GTCTC	2 cut(s)	1032, 1199
BsmI	GAATGC	2 cut(s)	952, 1038
BsnI	GGCC	2 cut(s)	314, 886
Bso31I	GGTCTC	1 cut(s)	1199
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	2 cut(s)	314, 886
BspCNI	CTCAG	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	1199
BsrDI	GCAATG	2 cut(s)	201, 289
BsrFI	RCCGGY	1 cut(s)	1196
BsrI	ACTGG	5 cut(s)	232, 316, 439, 1287, 1299
BssAI	RCCGGY	1 cut(s)	1196
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	1100
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	2 cut(s)	478, 567
BstMAI	GTCTC	2 cut(s)	1032, 1199
BstMWI	GCNNNNNNNGC	2 cut(s)	633, 1044
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	1 cut(s)	1021
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	114, 928
BstV2I	GAAGAC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	314, 886
BtsI	GCAGTG	1 cut(s)	1273
BtsIMutI	CAGTG	2 cut(s)	1273, 1280
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	634
Cfr10I	RCCGGY	1 cut(s)	1196
Cfr13I	GGNCC	2 cut(s)	313, 1228
Csp6I	GTAC	2 cut(s)	89, 294
CviAII	CATG	4 cut(s)	593, 691, 817, 1018
CviQI	GTAC	2 cut(s)	89, 294
DdeI	CTNAG	2 cut(s)	478, 567
DraI	TTTAAA	2 cut(s)	9, 903
Eam1104I	CTCTTC	1 cut(s)	1100
EarI	CTCTTC	1 cut(s)	1100
Eco31I	GGTCTC	1 cut(s)	1199
Eco47I	GGWCC	1 cut(s)	1228
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	829
FaeI	CATG	4 cut(s)	596, 694, 820, 1021
FatI	CATG	4 cut(s)	592, 690, 816, 1017
FauNDI	CATATG	2 cut(s)	409, 922
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	103, 917
Fsp4HI	GCNGC	2 cut(s)	103, 917
FspBI	CTAG	5 cut(s)	17, 428, 657, 675, 1306
GluI	GCNGC	2 cut(s)	103, 917
GsuI	CTGGAG	4 cut(s)	249, 276, 852, 983
HaeIII	GGCC	2 cut(s)	314, 886
HapII	CCGG	2 cut(s)	887, 1197
Hin1II	CATG	4 cut(s)	596, 694, 820, 1021
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	355, 475
HpaII	CCGG	2 cut(s)	887, 1197
HphI	GGTGA	5 cut(s)	24, 482, 545, 863, 1158
Hpy166II	GTNNAC	3 cut(s)	262, 343, 1166
Hpy188I	TCNGA	5 cut(s)	568, 774, 882, 945, 1058
Hpy188III	TCNNGA	4 cut(s)	307, 962, 1086, 1250
Hpy8I	GTNNAC	3 cut(s)	262, 343, 1166
HpyAV	CCTTC	4 cut(s)	304, 410, 485, 530
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	7 cut(s)	194, 217, 592, 599, 751, 950, 1038
HpyF10VI	GCNNNNNNNGC	2 cut(s)	633, 1044
HpyF3I	CTNAG	2 cut(s)	478, 567
Hsp92II	CATG	4 cut(s)	596, 694, 820, 1021
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	2 cut(s)	114, 928
LweI	GCATC	1 cut(s)	1243
MaeI	CTAG	5 cut(s)	17, 428, 657, 675, 1306
MaeIII	GTNAC	3 cut(s)	451, 694, 869
MboII	GAAGA	8 cut(s)	295, 380, 383, 500, 597, 713, 1075, 1117
MfeI	CAATTG	1 cut(s)	1141
MlyI	GAGTC	4 cut(s)	84, 758, 1034, 1062
MmeI	TCCRAC	3 cut(s)	406, 1081, 1197
MseI	TTAA	7 cut(s)	8, 47, 110, 465, 864, 902, 1101
MslI	CAYNNNNRTG	1 cut(s)	925
MspI	CCGG	2 cut(s)	887, 1197
MspR9I	CCNGG	1 cut(s)	831
MunI	CAATTG	1 cut(s)	1141
Mva1269I	GAATGC	2 cut(s)	952, 1038
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	2 cut(s)	633, 1044
NdeI	CATATG	2 cut(s)	409, 922
NlaIII	CATG	4 cut(s)	596, 694, 820, 1021
NmuCI	GTSAC	2 cut(s)	694, 869
NspI	RCATGY	1 cut(s)	1021
PaqCI	CACCTGC	1 cut(s)	590
PciI	ACATGT	1 cut(s)	1017
PctI	GAATGC	2 cut(s)	952, 1038
PfeI	GAWTC	7 cut(s)	233, 242, 404, 524, 731, 812, 1001
PfoI	TCCNGGA	1 cut(s)	829
PkrI	GCNGC	2 cut(s)	104, 918
PleI	GAGTC	4 cut(s)	83, 758, 1033, 1061
PpsI	GAGTC	4 cut(s)	83, 758, 1033, 1061
PscI	ACATGT	1 cut(s)	1017
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspPI	GGNCC	2 cut(s)	313, 1228
RsaI	GTAC	2 cut(s)	90, 295
RsaNI	GTAC	2 cut(s)	89, 294
RseI	CAYNNNNRTG	1 cut(s)	925
SaqAI	TTAA	7 cut(s)	8, 47, 110, 465, 864, 902, 1101
SatI	GCNGC	2 cut(s)	103, 917
Sau96I	GGNCC	2 cut(s)	313, 1228
SchI	GAGTC	4 cut(s)	84, 758, 1034, 1062
ScrFI	CCNGG	1 cut(s)	831
SfaNI	GCATC	1 cut(s)	1243
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	1228
SmiMI	CAYNNNNRTG	1 cut(s)	925
SmlI	CTYRAG	2 cut(s)	937, 1210
SmoI	CTYRAG	2 cut(s)	937, 1210
SsiI	CCGC	1 cut(s)	845
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	5 cut(s)	17, 428, 657, 675, 1306
StyD4I	CCNGG	1 cut(s)	829
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	502, 1241
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	7 cut(s)	233, 242, 404, 524, 731, 812, 1001
Tru1I	TTAA	7 cut(s)	8, 47, 110, 465, 864, 902, 1101
Tru9I	TTAA	7 cut(s)	8, 47, 110, 465, 864, 902, 1101
TscAI	CASTG	2 cut(s)	1280, 1287
TseFI	GTSAC	2 cut(s)	694, 869
TseI	GCWGC	2 cut(s)	102, 916
Tsp45I	GTSAC	2 cut(s)	694, 869
TspDTI	ATGAA	2 cut(s)	396, 1110
TspRI	CASTG	2 cut(s)	1280, 1287
VpaK11BI	GGWCC	1 cut(s)	1228
XapI	RAATTY	4 cut(s)	169, 269, 559, 578
XceI	RCATGY	1 cut(s)	1021
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	5 cut(s)	17, 428, 657, 675, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.