Rmu_sc0000312.1_g000016

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000312.1
Physical Location & Seq
Reverse (-)
58615 .. 62516
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000312.1_g000016.1.cds

Sequence Viewer

Length: 1815 bp
atggttttaaagaaactagagcagtttttctcaccaaaaagaaacttaatttctgggtttgttttgggaattggagtctctctcattgtactttttgtgagcaactccttaaggagtagtagtcctacacctacagtagaggaacaggggctttataatgtttttgtaaattcttcttttgtttcaactactgcacattccattgccccagaattgcagagttctactggagaatcaaatgagtctgtaattgctggagtagtcgaaaaatttgtggaggacaatgagaatggtacaatggtcttccagaaggcccagttgggaaatattacagaggaagttgacgatagaataagcttttgggttgaagaagaaagtgtccaactgaaagatgatagctttgattcatatggggaaggaagtgttctagggattgcccagttggggaatgttacagagcaagttaaaggtgaaagcttaggggttgaagaaggaagtgttcgacaaaaagatggcaactttgattcaaacggtgaaggagggattgcccatttggggaattcctctgagattttggaatttggaagattgcatggtgcaggtgggaaagcaacggggaaatcaagcgttgctggcaaagaggaaagcgttgaagctagtttttcaaacaattctaggagtgggaatggcatggtctcagaagatgtaaaaattgaaattattggctttgattctcaaacttgggaaatgcagagtgatgatgactctgatcagaaatgtgatatttatgatggtaaatgggtaagagatgattcaatgccatactatcctggaggttcttgtccgcacattgatagggattttaattgtcacctcaatcggaggccggacgatgagtttttgaaatggaaatggcagccatatgggtgcgacatctcaagtctgaatgcaactgattttctggagaggttgaggggaaagaggctggtttttgtgggagattcgctgaataggaacatgtgggagtctctggtgtgcattctacgccacagagtccgacagaagaataaagtttatgagctttcaggaaagtcgcaatttaagaagaggggcatttattcattcaagtttgaggaatacaattgttttgtggaatatgttggttcaccattccttgttaggcaatcatcattcgccggtaaagagaccttgaggttggatttgatggaccagaccacatcgaagtatcgtgatgctgatattatagttttcaacaccgcccactggtggaattactggaaaacagctagaggactacactattaccaagaaggcaactatgtgcacccaaggctaaaggctcttgaagcatacaagagagctctcaccacttgggctagatgggtggacatgaacatcaatcccaaccggactcgggttttcttccgaggatatgcatattcccattacagtaatgggcaatggaactcaggaggacattgccacaaagaaacagaaccaatctttaacgaagctcatttatcgaagtatccttcgaaaatgagagctgtagagtctgtacttcaaggaatgaaaactccggtgacgtatttaaacataagtaggcttacagattacagaaaagatgcccacccttccatttacagaatggaatacaagacaaaagaagaagaaattgctgctgaacgatctcaggattgcaaccattggtgcttgccgggggttccggatacttggaacgaattgctatatgcttcgcttttgaaggacggatgggaatcagggcaaaaatga

Protein Analysis

604

Amino Acids

68.69

Weight (kDa)

5.65

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AarI CACCTGC 1 cut(s) 590
Acc36I ACCTGC 1 cut(s) 590
AccIII TCCGGA 1 cut(s) 1747
AciI CCGC 2 cut(s) 845, 1278
AcsI RAATTY 4 cut(s) 169, 269, 559, 578
AfaI GTAC 3 cut(s) 90, 295, 1581
AfiI CCNNNNNNNGG 5 cut(s) 444, 555, 1284, 1287, 1435
AflII CTTAAG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 1017
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 343, 375
AluBI AGCT 9 cut(s) 357, 399, 477, 656, 1081, 1307, 1382, 1535, 1568
AluI AGCT 9 cut(s) 357, 399, 477, 656, 1081, 1307, 1382, 1535, 1568
Alw21I GWGCWC 2 cut(s) 1347, 1384
Alw26I GTCTC 4 cut(s) 82, 700, 1032, 1199
Alw44I GTGCAC 1 cut(s) 1343
Ama87I CYCGRG 1 cut(s) 1434
Aor13HI TCCGGA 1 cut(s) 1747
AoxI GGCC 2 cut(s) 312, 884
ApaLI GTGCAC 1 cut(s) 1343
ApeKI GCWGC 2 cut(s) 916, 1700
ApoI RAATTY 4 cut(s) 169, 269, 559, 578
AspS9I GGNCC 2 cut(s) 313, 1228
AsuC2I CCSGG 1 cut(s) 1740
AsuHPI GGTGA 7 cut(s) 24, 482, 545, 863, 1158, 1378, 1615
AsuII TTCGAA 1 cut(s) 1556
AvaI CYCGRG 1 cut(s) 1434
AvaII GGWCC 1 cut(s) 1228
BaeGI GKGCMC 1 cut(s) 1347
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanII GRGCYC 1 cut(s) 1384
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 2 cut(s) 1347, 1384
BbvI GCAGC 2 cut(s) 928, 1687
BccI CCATC 5 cut(s) 506, 785, 1219, 1395, 1788
BciT130I CCWGG 1 cut(s) 831
BciVI GTATCC 2 cut(s) 1560, 1744
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 1740
BcoDI GTCTC 4 cut(s) 82, 700, 1032, 1199
BfaI CTAG 6 cut(s) 17, 428, 657, 675, 1308, 1398
BfmI CTRYAG 2 cut(s) 132, 1569
BfrI CTTAAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 590
BfuI GTATCC 2 cut(s) 1560, 1744
BisI GCNGC 2 cut(s) 917, 1701
BlsI GCNGC 2 cut(s) 918, 1702
Bme1390I CCNGG 2 cut(s) 831, 1740
Bme18I GGWCC 1 cut(s) 1228
BmeT110I CYCGRG 1 cut(s) 1434
BmgT120I GGNCC 2 cut(s) 313, 1228
BmiI GGNNCC 1 cut(s) 1746
BmrFI CCNGG 2 cut(s) 831, 1740
BmrI ACTGGG 2 cut(s) 310, 433
BmsI GCATC 2 cut(s) 1243, 1636
BmuI ACTGGG 2 cut(s) 310, 433
BpiI GAAGAC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 4 cut(s) 249, 276, 852, 983
Bpu10I CCTNAGC 1 cut(s) 478
Bpu14I TTCGAA 1 cut(s) 1556
BpuEI CTTGAG 2 cut(s) 922, 1231
BpuMI CCSGG 1 cut(s) 1740
BsaBI GATNNNNATC 1 cut(s) 1798
BsaI GGTCTC 2 cut(s) 700, 1199
BsaJI CCNNGG 3 cut(s) 1349, 1447, 1739
BsaWI WCCGGW 3 cut(s) 1428, 1600, 1747
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 5 cut(s) 444, 555, 1284, 1287, 1435
Bse118I RCCGGY 1 cut(s) 1196
Bse1I ACTGG 5 cut(s) 232, 316, 439, 1289, 1301
Bse3DI GCAATG 3 cut(s) 201, 1487, 1498
Bse8I GATNNNNATC 1 cut(s) 1798
BseAI TCCGGA 1 cut(s) 1747
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 1349, 1447, 1739
BseGI GGATG 1 cut(s) 1799
BseJI GATNNNNATC 1 cut(s) 1798
BseLI CCNNNNNNNGG 5 cut(s) 444, 555, 1284, 1287, 1435
BseMI GCAATG 3 cut(s) 201, 1487, 1498
BseMII CTCAG 4 cut(s) 558, 711, 1503, 1727
BseNI ACTGG 5 cut(s) 232, 316, 439, 1289, 1301
BseSI GKGCMC 1 cut(s) 1347
BseXI GCAGC 2 cut(s) 928, 1687
BsgI GTGCAG 2 cut(s) 177, 618
BshFI GGCC 2 cut(s) 314, 886
BsiHKAI GWGCWC 2 cut(s) 1347, 1384
BsiHKCI CYCGRG 1 cut(s) 1434
BsiSI CCGG 6 cut(s) 887, 1197, 1429, 1601, 1739, 1748
BslI CCNNNNNNNGG 5 cut(s) 444, 555, 1284, 1287, 1435
BsmAI GTCTC 4 cut(s) 82, 700, 1032, 1199
BsmI GAATGC 2 cut(s) 952, 1038
BsnI GGCC 2 cut(s) 314, 886
Bso31I GGTCTC 2 cut(s) 700, 1199
BsoBI CYCGRG 1 cut(s) 1434
Bsp119I TTCGAA 1 cut(s) 1556
Bsp1286I GDGCHC 2 cut(s) 1347, 1384
Bsp13I TCCGGA 1 cut(s) 1747
Bsp143I GATC 2 cut(s) 769, 1709
BspACI CCGC 2 cut(s) 845, 1278
BspANI GGCC 2 cut(s) 314, 886
BspCNI CTCAG 4 cut(s) 559, 710, 1502, 1726
BspEI TCCGGA 1 cut(s) 1747
BspLI GGNNCC 1 cut(s) 1746
BspMI ACCTGC 1 cut(s) 590
BspT104I TTCGAA 1 cut(s) 1556
BspTI CTTAAG 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 700, 1199
BsrDI GCAATG 3 cut(s) 201, 1487, 1498
BsrFI RCCGGY 1 cut(s) 1196
BsrI ACTGG 5 cut(s) 232, 316, 439, 1289, 1301
BssAI RCCGGY 1 cut(s) 1196
BssECI CCNNGG 3 cut(s) 1349, 1447, 1739
BssMI GATC 2 cut(s) 769, 1709
BssT1I CCWWGG 1 cut(s) 1349
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 3 cut(s) 136, 533, 1472
Bst6I CTCTTC 1 cut(s) 1100
BstAFI CTTAAG 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 1556
BstC8I GCNNGC 2 cut(s) 634, 1736
BstDEI CTNAG 5 cut(s) 478, 567, 697, 1489, 1713
BstF5I GGATG 1 cut(s) 1799
BstKTI GATC 2 cut(s) 772, 1712
BstMAI GTCTC 4 cut(s) 82, 700, 1032, 1199
BstMBI GATC 2 cut(s) 769, 1709
BstMWI GCNNNNNNNGC 4 cut(s) 633, 1044, 1351, 1367
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 829, 1738
BstSFI CTRYAG 2 cut(s) 132, 1569
BstSLI GKGCMC 1 cut(s) 1347
BstV1I GCAGC 2 cut(s) 928, 1687
BstV2I GAAGAC 1 cut(s) 295
BsuI GTATCC 2 cut(s) 1560, 1744
BsuRI GGCC 2 cut(s) 314, 886
BtsCI GGATG 1 cut(s) 1799
BtsIMutI CAGTG 1 cut(s) 1282
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 2 cut(s) 634, 1736
Cfr10I RCCGGY 1 cut(s) 1196
Cfr13I GGNCC 2 cut(s) 313, 1228
Csp6I GTAC 3 cut(s) 89, 294, 1580
CviAII CATG 4 cut(s) 593, 691, 1018, 1411
CviQI GTAC 3 cut(s) 89, 294, 1580
DdeI CTNAG 5 cut(s) 478, 567, 697, 1489, 1713
DpnI GATC 2 cut(s) 771, 1711
DpnII GATC 2 cut(s) 769, 1709
DraI TTTAAA 2 cut(s) 9, 1614
Eam1104I CTCTTC 1 cut(s) 1100
EarI CTCTTC 1 cut(s) 1100
Ecl136II GAGCTC 1 cut(s) 1382
Eco130I CCWWGG 1 cut(s) 1349
Eco24I GRGCYC 1 cut(s) 1384
Eco31I GGTCTC 2 cut(s) 700, 1199
Eco47I GGWCC 1 cut(s) 1228
Eco53kI GAGCTC 1 cut(s) 1382
Eco88I CYCGRG 1 cut(s) 1434
EcoICRI GAGCTC 1 cut(s) 1382
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 1349
EcoT22I ATGCAT 1 cut(s) 1459
EcoT38I GRGCYC 1 cut(s) 1384
ErhI CCWWGG 1 cut(s) 1349
FaeI CATG 4 cut(s) 596, 694, 1021, 1414
FatI CATG 4 cut(s) 592, 690, 1017, 1410
FauNDI CATATG 2 cut(s) 409, 922
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 2 cut(s) 917, 1701
FokI GGATG 1 cut(s) 1806
FriOI GRGCYC 1 cut(s) 1384
Fsp4HI GCNGC 2 cut(s) 917, 1701
FspBI CTAG 6 cut(s) 17, 428, 657, 675, 1308, 1398
GluI GCNGC 2 cut(s) 917, 1701
GsuI CTGGAG 4 cut(s) 249, 276, 852, 983
HaeIII GGCC 2 cut(s) 314, 886
HapII CCGG 6 cut(s) 887, 1197, 1429, 1601, 1739, 1748
Hin1II CATG 4 cut(s) 596, 694, 1021, 1414
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 355, 475
HpaII CCGG 6 cut(s) 887, 1197, 1429, 1601, 1739, 1748
HphI GGTGA 7 cut(s) 24, 482, 545, 863, 1158, 1378, 1615
Hpy166II GTNNAC 4 cut(s) 343, 1166, 1345, 1408
Hpy188I TCNGA 8 cut(s) 568, 700, 769, 774, 882, 945, 1058, 1448
Hpy188III TCNNGA 8 cut(s) 307, 962, 1086, 1250, 1364, 1491, 1715, 1748
Hpy8I GTNNAC 4 cut(s) 343, 1166, 1345, 1408
HpyAV CCTTC 8 cut(s) 304, 410, 485, 530, 1325, 1563, 1665, 1780
HpyCH4III ACNGT 3 cut(s) 136, 533, 1472
HpyCH4IV ACGT 1 cut(s) 1607
HpyF10VI GCNNNNNNNGC 4 cut(s) 633, 1044, 1351, 1367
HpyF3I CTNAG 5 cut(s) 478, 567, 697, 1489, 1713
HpySE526I ACGT 1 cut(s) 1607
Hsp92II CATG 4 cut(s) 596, 694, 1021, 1414
Kpn2I TCCGGA 1 cut(s) 1747
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 2 cut(s) 769, 1709
Lsp1109I GCAGC 2 cut(s) 928, 1687
LweI GCATC 2 cut(s) 1243, 1636
MaeI CTAG 6 cut(s) 17, 428, 657, 675, 1308, 1398
MaeII ACGT 1 cut(s) 1607
MaeIII GTNAC 3 cut(s) 451, 869, 1603
MalI GATC 2 cut(s) 771, 1711
MboI GATC 2 cut(s) 769, 1709
MfeI CAATTG 1 cut(s) 1141
MhlI GDGCHC 2 cut(s) 1347, 1384
MlyI GAGTC 7 cut(s) 84, 251, 758, 1034, 1062, 1426, 1583
MmeI TCCRAC 3 cut(s) 406, 1081, 1197
Mph1103I ATGCAT 1 cut(s) 1459
MroI TCCGGA 1 cut(s) 1747
MseI TTAA 8 cut(s) 8, 47, 110, 465, 864, 1101, 1527, 1613
MslI CAYNNNNRTG 1 cut(s) 925
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 6 cut(s) 887, 1197, 1429, 1601, 1739, 1748
MspR9I CCNGG 2 cut(s) 831, 1740
MunI CAATTG 1 cut(s) 1141
Mva1269I GAATGC 2 cut(s) 952, 1038
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 4 cut(s) 633, 1044, 1351, 1367
NciI CCSGG 1 cut(s) 1740
NdeI CATATG 2 cut(s) 409, 922
NdeII GATC 2 cut(s) 769, 1709
NlaIII CATG 4 cut(s) 596, 694, 1021, 1414
NlaIV GGNNCC 1 cut(s) 1746
NmuCI GTSAC 2 cut(s) 869, 1603
NsiI ATGCAT 1 cut(s) 1459
NspI RCATGY 1 cut(s) 1021
NspV TTCGAA 1 cut(s) 1556
PaqCI CACCTGC 1 cut(s) 590
PciI ACATGT 1 cut(s) 1017
PctI GAATGC 2 cut(s) 952, 1038
PfeI GAWTC 7 cut(s) 233, 404, 524, 731, 812, 1001, 1799
PfoI TCCNGGA 1 cut(s) 829
PkrI GCNGC 2 cut(s) 918, 1702
PleI GAGTC 7 cut(s) 83, 250, 758, 1033, 1061, 1426, 1582
PpsI GAGTC 7 cut(s) 83, 250, 758, 1033, 1061, 1426, 1582
PscI ACATGT 1 cut(s) 1017
PsiI TTATAA 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 1384
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 1 cut(s) 1746
PspPI GGNCC 2 cut(s) 313, 1228
RsaI GTAC 3 cut(s) 90, 295, 1581
RsaNI GTAC 3 cut(s) 89, 294, 1580
RseI CAYNNNNRTG 1 cut(s) 925
SacI GAGCTC 1 cut(s) 1384
SaqAI TTAA 8 cut(s) 8, 47, 110, 465, 864, 1101, 1527, 1613
SatI GCNGC 2 cut(s) 917, 1701
Sau3AI GATC 2 cut(s) 769, 1709
Sau96I GGNCC 2 cut(s) 313, 1228
SchI GAGTC 7 cut(s) 84, 251, 758, 1034, 1062, 1426, 1583
ScrFI CCNGG 2 cut(s) 831, 1740
SduI GDGCHC 2 cut(s) 1347, 1384
SfaNI GCATC 2 cut(s) 1243, 1636
SfcI CTRYAG 2 cut(s) 132, 1569
SfuI TTCGAA 1 cut(s) 1556
SinI GGWCC 1 cut(s) 1228
SmiMI CAYNNNNRTG 1 cut(s) 925
SmlI CTYRAG 3 cut(s) 109, 937, 1210
SmoI CTYRAG 3 cut(s) 109, 937, 1210
SsiI CCGC 2 cut(s) 845, 1278
SspI AATATT 1 cut(s) 328
SspMI CTAG 6 cut(s) 17, 428, 657, 675, 1308, 1398
SstI GAGCTC 1 cut(s) 1384
StyD4I CCNGG 2 cut(s) 829, 1738
StyI CCWWGG 1 cut(s) 1349
TaaI ACNGT 3 cut(s) 136, 533, 1472
TaiI ACGT 1 cut(s) 1610
TaqI TCGA 5 cut(s) 264, 502, 1241, 1544, 1556
TatI WGTACW 2 cut(s) 88, 1579
TfiI GAWTC 7 cut(s) 233, 404, 524, 731, 812, 1001, 1799
Tru1I TTAA 8 cut(s) 8, 47, 110, 465, 864, 1101, 1527, 1613
Tru9I TTAA 8 cut(s) 8, 47, 110, 465, 864, 1101, 1527, 1613
TscAI CASTG 1 cut(s) 1289
TseFI GTSAC 2 cut(s) 869, 1603
TseI GCWGC 2 cut(s) 916, 1700
Tsp45I GTSAC 2 cut(s) 869, 1603
TspDTI ATGAA 4 cut(s) 396, 1110, 1427, 1607
TspGWI ACGGA 1 cut(s) 1806
TspRI CASTG 1 cut(s) 1289
Vha464I CTTAAG 1 cut(s) 109
VneI GTGCAC 1 cut(s) 1343
VpaK11BI GGWCC 1 cut(s) 1228
XapI RAATTY 4 cut(s) 169, 269, 559, 578
XceI RCATGY 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 2 cut(s) 1472, 1666
XspI CTAG 6 cut(s) 17, 428, 657, 675, 1308, 1398
Zsp2I ATGCAT 1 cut(s) 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.