Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Reverse (-)

49670619 .. 49673868

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGCATGCATTGTCTTCAGCCATGGTTTTAAAGAAACTAGAGCAGTTTTTCTCACCAAAAAGAAACTTAATTTCTGGGTTTGTTTTGGGAATTGGAGTCTCTCTCATTGTACTAATTTTTGTGAGCAACTCCTTAAAGAGTAGTAGTCCTACTCCTACAGTAGAGGAACAGGGGTTTTATATTGTTTCTGTAAATTCCTCTTTTGTTTCAACTACTGCACATTCCATTGCCCCAGAATTGCAGAGTTCTACTGGAGAATCAAATGAGTCTGTAATTGCATTAGTAGACGAAAAATTTGTGGAGGGCAATGAGAATGGTACGATGGTCTTCGAGAAGGCCCAGTTGGGAAATATTACAGAGGAAGTTGACGATAGAATAAGCTTTTGGGTTGAAGAAGAAAGTGTCCAACTGAAAGATGATAGCTTTGATTCATATGGGGAAGGAAGTGTTCTAGGGATTGCCCAGTTGGGGAATGTTACAGAGCAAGTTAAAGGTGAAAGCTTAGCGGTTGAAGAAGGAAGTGTTCGACAAAAAGATGGCAACTTTGATTCAAACGGTGAAGGAGGGATTGCCCATTTGGGGAATTCCTCTCAGATTTTGGAATTTGGAAGATTGCATGGTGCAGGTGGGAAAGCAACGGGGAAATCAAGCGTTGCTGGCAAAGAGGAAAGCGTTGAAGCTAGTTTTTCAAACAATTCTAGGAGTGGGAATGGCATGGTCACAGAAGATGTAAAAAATGAAATTATTGGCTTTGATTCTCAAACTTGGGAAATGCAGAGTGATGATGACTCTGATCAGAAATGTGATATTTATGATGGTAAATGGGTAAGGGATGATTCAATGCCATACTATCCCGGAGGTTCTTGTCCGCACATTGATAGGGATTTTAATTGTCACCTCAATCGGAGGCCGGACGATGAGTTTTTAAAATGGAAATGGCAGCCATATGGGTGCGACATCTCAAGTCTGAATGCAACTGATTTTCTGGAGAGGTTGAGGGGAAAGAGGCTGGTTTTTGTGGGAGATTCGCTGAATAGGAACATGTGGGAGTCTCTGGTGTGCATTCTACGCCACACCGTCCGACACAAGAATAGAGTTTATGAGCTTTCAGGAAAGTCGCAATTTAAGAAGAGGGGCATTTATTCATTCAAGTTTGAGGAATACGATTGTTTTGTGGAATATGTTGGTTCACCATTCCTTGTTAGGCAATCATCATTCGCCGGTAAAGAGACCTTGAGGTTGGATTTGATGGACCAGACCACATCGAAGTATCGTGATGCTGATATTATAGTTTTCAACACTGCCCACTGGTGGAATTACTGGAAAACAGCTAGAGGGTTAGTGCTTTTTTATTCTTTCCTTGAGTTTCTGATTATAGCCCTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

462

Amino Acids

51.81

Weight (kDa)

4.97

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	266 - 319	3.4e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	322 - 442	1.1e-36	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	506, 869
AcsI	RAATTY	4 cut(s)	193, 293, 583, 602
AfaI	GTAC	2 cut(s)	111, 319
AfiI	CCNNNNNNNGG	3 cut(s)	468, 579, 1311
AflIII	ACRYGT	1 cut(s)	1041
AgsI	TTSAA	9 cut(s)	210, 392, 512, 552, 677, 690, 840, 1150, 1297
AjuI	GAANNNNNNNTTGG	4 cut(s)	326, 358, 367, 399
AluBI	AGCT	6 cut(s)	381, 423, 501, 680, 1105, 1331
AluI	AGCT	6 cut(s)	381, 423, 501, 680, 1105, 1331
Alw26I	GTCTC	3 cut(s)	103, 1056, 1223
AoxI	GGCC	2 cut(s)	336, 908
ApeKI	GCWGC	1 cut(s)	940
ApoI	RAATTY	4 cut(s)	193, 293, 583, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspS9I	GGNCC	2 cut(s)	337, 1252
AsuC2I	CCSGG	1 cut(s)	855
AsuHPI	GGTGA	5 cut(s)	45, 506, 569, 887, 1182
AvaII	GGWCC	1 cut(s)	1252
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BbsI	GAAGAC	2 cut(s)	6, 319
BbvI	GCAGC	1 cut(s)	952
BccI	CCATC	4 cut(s)	316, 530, 809, 1243
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	1 cut(s)	855
BcoDI	GTCTC	3 cut(s)	103, 1056, 1223
BfaI	CTAG	5 cut(s)	38, 452, 681, 699, 1332
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	614
BisI	GCNGC	1 cut(s)	941
BlpI	GCTNAGC	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	942
Bme1390I	CCNGG	1 cut(s)	855
Bme18I	GGWCC	1 cut(s)	1252
BmgT120I	GGNCC	2 cut(s)	337, 1252
BmrFI	CCNGG	1 cut(s)	855
BmrI	ACTGGG	2 cut(s)	334, 457
BmsI	GCATC	1 cut(s)	1267
BmuI	ACTGGG	2 cut(s)	334, 457
BpiI	GAAGAC	2 cut(s)	6, 319
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	2 cut(s)	273, 1007
Bpu1102I	GCTNAGC	1 cut(s)	502
BpuEI	CTTGAG	3 cut(s)	946, 1255, 1382
BpuMI	CCSGG	1 cut(s)	855
BsaI	GGTCTC	1 cut(s)	1223
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 579, 1311
Bse118I	RCCGGY	1 cut(s)	1220
Bse1I	ACTGG	5 cut(s)	256, 340, 463, 1313, 1325
Bse3DI	GCAATG	2 cut(s)	225, 313
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	3 cut(s)	468, 579, 1311
BseMI	GCAATG	2 cut(s)	225, 313
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	5 cut(s)	256, 340, 463, 1313, 1325
BseXI	GCAGC	1 cut(s)	952
BsgI	GTGCAG	2 cut(s)	201, 642
BshFI	GGCC	2 cut(s)	338, 910
BsiSI	CCGG	3 cut(s)	855, 911, 1221
BslI	CCNNNNNNNGG	3 cut(s)	468, 579, 1311
BsmAI	GTCTC	3 cut(s)	103, 1056, 1223
BsmI	GAATGC	2 cut(s)	976, 1062
BsnI	GGCC	2 cut(s)	338, 910
Bso31I	GGTCTC	1 cut(s)	1223
Bsp143I	GATC	1 cut(s)	793
Bsp1720I	GCTNAGC	1 cut(s)	502
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	506, 869
BspANI	GGCC	2 cut(s)	338, 910
BspCNI	CTCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	1223
BsrDI	GCAATG	2 cut(s)	225, 313
BsrFI	RCCGGY	1 cut(s)	1220
BsrI	ACTGG	5 cut(s)	256, 340, 463, 1313, 1325
BssAI	RCCGGY	1 cut(s)	1220
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	793
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	160, 557, 1078
Bst6I	CTCTTC	1 cut(s)	1124
BstC8I	GCNNGC	2 cut(s)	6, 658
BstDEI	CTNAG	2 cut(s)	502, 591
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	838
BstKTI	GATC	1 cut(s)	796
BstMAI	GTCTC	3 cut(s)	103, 1056, 1223
BstMBI	GATC	1 cut(s)	793
BstMWI	GCNNNNNNNGC	2 cut(s)	657, 1068
BstNSI	RCATGY	2 cut(s)	8, 1045
BstSCI	CCNGG	1 cut(s)	853
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	952
BstV2I	GAAGAC	2 cut(s)	6, 319
BsuRI	GGCC	2 cut(s)	338, 910
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	1299
BtsIMutI	CAGTG	2 cut(s)	1299, 1306
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	6, 658
Cfr10I	RCCGGY	1 cut(s)	1220
Cfr13I	GGNCC	2 cut(s)	337, 1252
Csp6I	GTAC	2 cut(s)	110, 318
CviAII	CATG	5 cut(s)	5, 22, 617, 715, 1042
CviQI	GTAC	2 cut(s)	110, 318
DdeI	CTNAG	2 cut(s)	502, 591
DpnI	GATC	1 cut(s)	795
DpnII	GATC	1 cut(s)	793
DraI	TTTAAA	2 cut(s)	30, 927
Eam1104I	CTCTTC	1 cut(s)	1124
EarI	CTCTTC	1 cut(s)	1124
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	1223
Eco47I	GGWCC	1 cut(s)	1252
EcoRI	GAATTC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	2 cut(s)	6, 10
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	8, 25, 620, 718, 1045
FatI	CATG	5 cut(s)	4, 21, 616, 714, 1041
FauNDI	CATATG	2 cut(s)	433, 946
FbaI	TGATCA	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	941
FokI	GGATG	1 cut(s)	845
Fsp4HI	GCNGC	1 cut(s)	941
FspBI	CTAG	5 cut(s)	38, 452, 681, 699, 1332
GluI	GCNGC	1 cut(s)	941
GsuI	CTGGAG	2 cut(s)	273, 1007
HaeIII	GGCC	2 cut(s)	338, 910
HapII	CCGG	3 cut(s)	855, 911, 1221
Hin1II	CATG	5 cut(s)	8, 25, 620, 718, 1045
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	379, 499
HpaII	CCGG	3 cut(s)	855, 911, 1221
HphI	GGTGA	5 cut(s)	45, 506, 569, 887, 1182
Hpy166II	GTNNAC	3 cut(s)	286, 367, 1190
Hpy188I	TCNGA	7 cut(s)	594, 793, 798, 906, 969, 1082, 1371
Hpy188III	TCNNGA	4 cut(s)	331, 986, 1110, 1274
Hpy8I	GTNNAC	3 cut(s)	286, 367, 1190
HpyAV	CCTTC	4 cut(s)	328, 434, 509, 554
HpyCH4III	ACNGT	3 cut(s)	160, 557, 1078
HpyF10VI	GCNNNNNNNGC	2 cut(s)	657, 1068
HpyF3I	CTNAG	2 cut(s)	502, 591
Hsp92II	CATG	5 cut(s)	8, 25, 620, 718, 1045
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	1 cut(s)	793
Lsp1109I	GCAGC	1 cut(s)	952
LweI	GCATC	1 cut(s)	1267
MaeI	CTAG	5 cut(s)	38, 452, 681, 699, 1332
MaeIII	GTNAC	3 cut(s)	475, 718, 893
MalI	GATC	1 cut(s)	795
MboI	GATC	1 cut(s)	793
MboII	GAAGA	8 cut(s)	6, 319, 404, 407, 524, 621, 737, 1141
MlyI	GAGTC	4 cut(s)	105, 275, 782, 1058
MmeI	TCCRAC	3 cut(s)	430, 1105, 1221
Mph1103I	ATGCAT	2 cut(s)	6, 10
MseI	TTAA	8 cut(s)	29, 68, 134, 489, 888, 926, 1125, 1387
MslI	CAYNNNNRTG	1 cut(s)	949
MspI	CCGG	3 cut(s)	855, 911, 1221
MspR9I	CCNGG	1 cut(s)	855
Mva1269I	GAATGC	2 cut(s)	976, 1062
MwoI	GCNNNNNNNGC	2 cut(s)	657, 1068
NciI	CCSGG	1 cut(s)	855
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	433, 946
NdeII	GATC	1 cut(s)	793
NlaIII	CATG	5 cut(s)	8, 25, 620, 718, 1045
NmuCI	GTSAC	2 cut(s)	718, 893
NsiI	ATGCAT	2 cut(s)	6, 10
NspI	RCATGY	2 cut(s)	8, 1045
PaeI	GCATGC	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	614
PciI	ACATGT	1 cut(s)	1041
PctI	GAATGC	2 cut(s)	976, 1062
PfeI	GAWTC	6 cut(s)	257, 428, 548, 755, 836, 1025
PfoI	TCCNGGA	1 cut(s)	853
PkrI	GCNGC	1 cut(s)	942
PleI	GAGTC	4 cut(s)	104, 274, 782, 1057
PpsI	GAGTC	4 cut(s)	104, 274, 782, 1057
PscI	ACATGT	1 cut(s)	1041
PspPI	GGNCC	2 cut(s)	337, 1252
RsaI	GTAC	2 cut(s)	111, 319
RsaNI	GTAC	2 cut(s)	110, 318
RseI	CAYNNNNRTG	1 cut(s)	949
SaqAI	TTAA	8 cut(s)	29, 68, 134, 489, 888, 926, 1125, 1387
SatI	GCNGC	1 cut(s)	941
Sau3AI	GATC	1 cut(s)	793
Sau96I	GGNCC	2 cut(s)	337, 1252
SchI	GAGTC	4 cut(s)	105, 275, 782, 1058
ScrFI	CCNGG	1 cut(s)	855
SfaNI	GCATC	1 cut(s)	1267
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	1252
SmiMI	CAYNNNNRTG	1 cut(s)	949
SmlI	CTYRAG	3 cut(s)	961, 1234, 1361
SmoI	CTYRAG	3 cut(s)	961, 1234, 1361
SphI	GCATGC	1 cut(s)	8
SsiI	CCGC	2 cut(s)	506, 869
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	5 cut(s)	38, 452, 681, 699, 1332
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	160, 557, 1078
TaqI	TCGA	3 cut(s)	330, 526, 1265
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	6 cut(s)	257, 428, 548, 755, 836, 1025
Tru1I	TTAA	8 cut(s)	29, 68, 134, 489, 888, 926, 1125, 1387
Tru9I	TTAA	8 cut(s)	29, 68, 134, 489, 888, 926, 1125, 1387
TscAI	CASTG	2 cut(s)	1306, 1313
TseFI	GTSAC	2 cut(s)	718, 893
TseI	GCWGC	1 cut(s)	940
Tsp45I	GTSAC	2 cut(s)	718, 893
TspDTI	ATGAA	3 cut(s)	420, 753, 1134
TspRI	CASTG	2 cut(s)	1306, 1313
VpaK11BI	GGWCC	1 cut(s)	1252
XapI	RAATTY	4 cut(s)	193, 293, 583, 602
XceI	RCATGY	2 cut(s)	8, 1045
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	5 cut(s)	38, 452, 681, 699, 1332
Zsp2I	ATGCAT	2 cut(s)	6, 10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.