Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008304.1

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1950

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008304.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 874 bp

tctgaatgcaactgattttctggagaggttgaggggaaagaggctggtttttgtgggagattcgctgaataggaacatgtgggagtctctggtgtgcattctacgccacagagtccgacagaagaataaagtttatgagctttcaggaaagtcgcaatttaagaagaggggcatttattcattcaagtttgaggaatacaattgttttgtggaatatgttggttcaccattccttgttaggcaatcatcattcgccggtaaagagaccttgaggttggatttgatggaccagaccacatcgaagtatcgtgatgctgatattatagttttcaacaccgcccactggtggaattactggaaaacagctagaggactacactattaccaagaaggcaactatgtgcacccaaggctaaaggctcttgaagcatacaagagagctctcaccacttgggctagatgggtggacatgaacatcaatcccaaccggactcgggttttcttccgaggatatgcatattcccattacagtaatgggcaatggaactcaggaggacattgccacaaagaaacagaaccaatctttaacgaagctcatttatcgaagtatccttcgaaaatgagagctgtagagtctgtacttcaaggaatgaaaactccggtgacgtatttaaacataagtaggcttacagattacagaaaagatgcccacccttccatttacagaatggaatacaagacaaaagaagaagaaattgctgctgaacgatctcaggattgcaaccattggtgcttgccgggggttccggatacttggaacgaattgctatatgcttcgcttttgaaggacggatgggaatcagggcaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

290

Amino Acids

34.38

Weight (kDa)

9.36

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	1 cut(s)	337
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	3 cut(s)	343, 346, 494
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	185, 332, 426, 645, 845
AluBI	AGCT	5 cut(s)	140, 366, 441, 594, 627
AluI	AGCT	5 cut(s)	140, 366, 441, 594, 627
Alw21I	GWGCWC	2 cut(s)	406, 443
Alw26I	GTCTC	2 cut(s)	91, 258
Alw44I	GTGCAC	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	493
Aor13HI	TCCGGA	1 cut(s)	806
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	759
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	3 cut(s)	217, 437, 674
AsuII	TTCGAA	1 cut(s)	615
AvaI	CYCGRG	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	406, 443
BbvI	GCAGC	1 cut(s)	746
BccI	CCATC	3 cut(s)	278, 454, 847
BciVI	GTATCC	2 cut(s)	619, 803
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	91, 258
BfaI	CTAG	2 cut(s)	367, 457
BfmI	CTRYAG	1 cut(s)	628
BfuI	GTATCC	2 cut(s)	619, 803
BisI	GCNGC	1 cut(s)	760
BlsI	GCNGC	1 cut(s)	761
Bme1390I	CCNGG	1 cut(s)	799
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	805
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	2 cut(s)	302, 695
BpmI	CTGGAG	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	408, 506, 798
BsaWI	WCCGGW	3 cut(s)	487, 659, 806
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 346, 494
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	348, 360
Bse3DI	GCAATG	2 cut(s)	546, 557
Bse8I	GATNNNNATC	1 cut(s)	857
BseAI	TCCGGA	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	408, 506, 798
BseGI	GGATG	1 cut(s)	858
BseJI	GATNNNNATC	1 cut(s)	857
BseLI	CCNNNNNNNGG	3 cut(s)	343, 346, 494
BseMI	GCAATG	2 cut(s)	546, 557
BseMII	CTCAG	2 cut(s)	562, 786
BseNI	ACTGG	2 cut(s)	348, 360
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	746
BsiHKAI	GWGCWC	2 cut(s)	406, 443
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	5 cut(s)	256, 488, 660, 798, 807
BslI	CCNNNNNNNGG	3 cut(s)	343, 346, 494
BsmAI	GTCTC	2 cut(s)	91, 258
BsmI	GAATGC	2 cut(s)	11, 97
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	406, 443
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	1 cut(s)	768
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	561, 785
BspEI	TCCGGA	1 cut(s)	806
BspLI	GGNNCC	1 cut(s)	805
BspT104I	TTCGAA	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	546, 557
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	348, 360
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	408, 506, 798
BssMI	GATC	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	2 cut(s)	548, 772
BstF5I	GGATG	1 cut(s)	858
BstKTI	GATC	1 cut(s)	771
BstMAI	GTCTC	2 cut(s)	91, 258
BstMBI	GATC	1 cut(s)	768
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 410, 426
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	1 cut(s)	628
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	746
BsuI	GTATCC	2 cut(s)	619, 803
BtsCI	GGATG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	795
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	2 cut(s)	77, 470
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	2 cut(s)	548, 772
DpnI	GATC	1 cut(s)	770
DpnII	GATC	1 cut(s)	768
DraI	TTTAAA	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	80, 473
FatI	CATG	2 cut(s)	76, 469
Fnu4HI	GCNGC	1 cut(s)	760
FokI	GGATG	1 cut(s)	865
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	760
FspBI	CTAG	2 cut(s)	367, 457
GluI	GCNGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	42
HapII	CCGG	5 cut(s)	256, 488, 660, 798, 807
Hin1II	CATG	2 cut(s)	80, 473
HinfI	GANTC	6 cut(s)	60, 84, 112, 491, 633, 858
HpaII	CCGG	5 cut(s)	256, 488, 660, 798, 807
HphI	GGTGA	3 cut(s)	217, 437, 674
Hpy166II	GTNNAC	3 cut(s)	225, 404, 467
Hpy188I	TCNGA	3 cut(s)	4, 117, 507
Hpy188III	TCNNGA	7 cut(s)	21, 145, 309, 423, 550, 774, 807
Hpy8I	GTNNAC	3 cut(s)	225, 404, 467
HpyAV	CCTTC	4 cut(s)	384, 622, 724, 839
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	5 cut(s)	9, 97, 404, 516, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 410, 426
HpyF3I	CTNAG	2 cut(s)	548, 772
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	2 cut(s)	80, 473
Kpn2I	TCCGGA	1 cut(s)	806
Kzo9I	GATC	1 cut(s)	768
Lsp1109I	GCAGC	1 cut(s)	746
LweI	GCATC	2 cut(s)	302, 695
MaeI	CTAG	2 cut(s)	367, 457
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	1 cut(s)	770
MboI	GATC	1 cut(s)	768
MboII	GAAGA	5 cut(s)	134, 176, 494, 759, 762
MfeI	CAATTG	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	406, 443
MluCI	AATT	5 cut(s)	156, 200, 350, 754, 822
MlyI	GAGTC	4 cut(s)	93, 121, 485, 642
MmeI	TCCRAC	2 cut(s)	140, 256
MnlI	CCTC	9 cut(s)	19, 25, 34, 160, 185, 265, 363, 501, 546
Mph1103I	ATGCAT	1 cut(s)	518
MroI	TCCGGA	1 cut(s)	806
MseI	TTAA	3 cut(s)	160, 586, 672
MspI	CCGG	5 cut(s)	256, 488, 660, 798, 807
MspR9I	CCNGG	1 cut(s)	799
MunI	CAATTG	1 cut(s)	200
Mva1269I	GAATGC	2 cut(s)	11, 97
MwoI	GCNNNNNNNGC	3 cut(s)	103, 410, 426
NciI	CCSGG	1 cut(s)	799
NdeII	GATC	1 cut(s)	768
NlaIII	CATG	2 cut(s)	80, 473
NlaIV	GGNNCC	1 cut(s)	805
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	615
PciI	ACATGT	1 cut(s)	76
PctI	GAATGC	2 cut(s)	11, 97
PfeI	GAWTC	2 cut(s)	60, 858
PkrI	GCNGC	1 cut(s)	761
PleI	GAGTC	4 cut(s)	92, 120, 485, 641
PpsI	GAGTC	4 cut(s)	92, 120, 485, 641
PscI	ACATGT	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	805
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	160, 586, 672
SatI	GCNGC	1 cut(s)	760
Sau3AI	GATC	1 cut(s)	768
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	4 cut(s)	93, 121, 485, 642
ScrFI	CCNGG	1 cut(s)	799
SduI	GDGCHC	2 cut(s)	406, 443
SetI	ASST	9 cut(s)	30, 142, 270, 276, 368, 443, 596, 629, 669
SfaNI	GCATC	2 cut(s)	302, 695
SfcI	CTRYAG	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	615
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	156, 200, 350, 754, 822
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	2 cut(s)	367, 457
SstI	GAGCTC	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	3 cut(s)	300, 603, 615
TasI	AATT	5 cut(s)	156, 200, 350, 754, 822
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	2 cut(s)	60, 858
Tru1I	TTAA	3 cut(s)	160, 586, 672
Tru9I	TTAA	3 cut(s)	160, 586, 672
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	759
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	3 cut(s)	169, 486, 666
TspGWI	ACGGA	1 cut(s)	865
TspRI	CASTG	1 cut(s)	348
VneI	GTGCAC	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	2 cut(s)	531, 725
XspI	CTAG	2 cut(s)	367, 457
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.