Rmu_sc0002501.1_g000017

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002501.1
Physical Location & Seq
Reverse (-)
73386 .. 76398
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002501.1_g000017.1.cds

Sequence Viewer

Length: 1992 bp
atgaaggtccaggaggttaagggccgaccacgtgtcggcgggaacccagttcgtatttgtgtcgcccttcggttccggacggttaataaaggaggagacgaaagcttcaccaatctgaccaacgtacccttcacaaaagcaaaagccatggattccaagaagctagagcagtttttctcacccagaagaaaagtggtttctgggtttagtttgggaattggagcctctctgtttgtaatcgccgtactgtttgtctcttactccttaaagagtcctactgtggaccaaggtttctatactgtaaattcctcttttgtttcatggcctttctcgttttcaagcactgcaaattctgttacttcagaaatgcaaggctctgtggacttgaacaagacccaattggggaatttcacagaggaagttaaagatggaagctctggggttgaaggaggaagggtggagcataaagatggtgagtttggttcaaatgagggagggggtgttttggggattttccatttggggaattcctctgagattttgaataatggaagcttgcatgttgaaggtggaggtgggaaagagacagttttggagaagacccagatgaggaattttacagaggcagttaaagatggaagctttgtggttgaggaaggaagagttcaacagaaagataataactcagattcaagaaattcctctgagattttgaaatttgagagcttgcatggtgaaggtgggaagggaattgggaatttaagcctttctaagaaagaagatgtgcatgaagagaaaacagttgaaggtagtttttcaaagaattctagtaatggggatggtaaggtaacagaagatcatcaaggaaattcaacacagaaaaatgagatcattgagcttgattctcaaacttgggaaatgcctagtgactctgataaaaaatgtgatatttttgatggtaaatgggtgagagatgattcaaagccgtactatcctgggggttcttgtccacacgttgataaggtttggaattgccactccaatcgaaggccagacagtgctttcctaaaatggaaatggcagccaaatgggtgtgatatcccaagtttgaatgcaactgattttctggagaggttgagaggaaagaggttggtttttgtgggggattcactgaataggaacatgtgggagtctcttgtgtgcattctccgtcacagcgttccgcacaagaaaaaggtatatgagatttcgggaaagaaggaatttaagaagaaggggatatatgcattcagatttgaggagtacaattgttctctggattttgtggttgctccattccttgttagggagtcaacattcacaggcaaaaacggttcgtttgagacattgaggttggatttgatggaccggactacaacaacgtatcgtgatgctgatatgatagtttttaatactggtcattggtggactcatgagaaaacttctagaggagaagactactaccaagaaggcaactatgtgcatccaaggctcaaggctcttgaagcatacaagagagctctcaccacttgggcgagatgggtggacaaatacatcaatgccaacaggactcgggttttcttcagaggatattcagtcacccatttcagtggagggcaatggaactcaggtggacagtgccacaaagaaacagaaccaatctttaatgagacttatctaacgcattacccttcgaaaatgagagctctagagagtgtacttaaagaaatgaaaactccagtgacatatcttaacattagtaggcttacggattatagaaaagacggacacccttccatttacagaacgatatacaagacaaaggaagaacaaattgcagctgaacaatctcaggattgcagtcattggtgcttgcctggggttccggatacttggaatgaattgttatacgctttgctgctgcagaccggatggggatcagggcaaaaatga

Protein Analysis

663

Amino Acids

74.88

Weight (kDa)

8.3

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 75, 1924
AciI CCGC 2 cut(s) 39, 1223
AclWI GGATC 1 cut(s) 1984
AcuI CTGAAG 2 cut(s) 345, 1606
AcvI CACGTG 1 cut(s) 32
AfaI GTAC 5 cut(s) 126, 246, 989, 1304, 1758
AfiI CCNNNNNNNGG 5 cut(s) 35, 402, 609, 1047, 1345
AflIII ACRYGT 3 cut(s) 31, 1012, 1182
AhdI GACNNNNNGTC 1 cut(s) 32
AjnI CCWGG 3 cut(s) 9, 994, 1915
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw21I GWGCWC 2 cut(s) 1561, 1747
Alw26I GTCTC 6 cut(s) 90, 259, 578, 1197, 1376, 1703
AlwI GGATC 1 cut(s) 1984
Ama87I CYCGRG 1 cut(s) 1611
Aor13HI TCCGGA 2 cut(s) 75, 1924
AoxI GGCC 3 cut(s) 22, 323, 1049
ApeKI GCWGC 4 cut(s) 1081, 1877, 1957, 1960
AspS9I GGNCC 4 cut(s) 7, 22, 283, 1405
AsuHPI GGTGA 7 cut(s) 100, 171, 485, 746, 979, 1555, 1630
AsuII TTCGAA 1 cut(s) 1733
AvaI CYCGRG 1 cut(s) 1611
AvaII GGWCC 3 cut(s) 7, 283, 1405
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanII GRGCYC 2 cut(s) 1561, 1747
BbrPI CACGTG 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 605, 1500
Bbv12I GWGCWC 2 cut(s) 1561, 1747
BbvI GCAGC 4 cut(s) 1093, 1889, 1944, 1947
BccI CCATC 8 cut(s) 422, 464, 629, 833, 950, 1396, 1572, 1965
BceAI ACGGC 2 cut(s) 227, 970
BciT130I CCWGG 3 cut(s) 11, 996, 1917
BciVI GTATCC 1 cut(s) 1921
BcoDI GTCTC 6 cut(s) 90, 259, 578, 1197, 1376, 1703
BfaI CTAG 5 cut(s) 164, 828, 924, 1485, 1748
BfmI CTRYAG 1 cut(s) 1961
BfuI GTATCC 1 cut(s) 1921
BisI GCNGC 4 cut(s) 1082, 1878, 1958, 1961
BlsI GCNGC 4 cut(s) 1083, 1879, 1959, 1962
Bme1390I CCNGG 3 cut(s) 11, 996, 1917
Bme18I GGWCC 3 cut(s) 7, 283, 1405
BmeRI GACNNNNNGTC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 1611
BmgT120I GGNCC 4 cut(s) 7, 22, 283, 1405
BmiI GGNNCC 4 cut(s) 44, 74, 223, 1923
BmrFI CCNGG 3 cut(s) 11, 996, 1917
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 1420, 1531
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 605, 1500
BpmI CTGGAG 2 cut(s) 1148, 1761
Bpu14I TTCGAA 1 cut(s) 1733
BpuEI CTTGAG 1 cut(s) 1517
BsaAI YACGTR 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 1975
BsaJI CCNNGG 5 cut(s) 147, 286, 995, 1526, 1916
BsaWI WCCGGW 4 cut(s) 75, 1407, 1924, 1967
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 486, 516
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 402, 609, 1047, 1345
Bse1I ACTGG 3 cut(s) 47, 1459, 1778
Bse3DI GCAATG 1 cut(s) 1664
Bse8I GATNNNNATC 1 cut(s) 1975
BseAI TCCGGA 2 cut(s) 75, 1924
BseBI CCWGG 3 cut(s) 11, 996, 1917
BseDI CCNNGG 5 cut(s) 147, 286, 995, 1526, 1916
BseGI GGATG 3 cut(s) 844, 1522, 1976
BseJI GATNNNNATC 1 cut(s) 1975
BseLI CCNNNNNNNGG 5 cut(s) 35, 402, 609, 1047, 1345
BseMI GCAATG 1 cut(s) 1664
BseMII CTCAG 5 cut(s) 525, 696, 699, 1680, 1904
BseNI ACTGG 3 cut(s) 47, 1459, 1778
BseRI GAGGAG 3 cut(s) 108, 1313, 1503
BseXI GCAGC 4 cut(s) 1093, 1889, 1944, 1947
BshFI GGCC 3 cut(s) 24, 325, 1051
BsiHKAI GWGCWC 2 cut(s) 1561, 1747
BsiHKCI CYCGRG 1 cut(s) 1611
BsiSI CCGG 4 cut(s) 76, 1408, 1925, 1968
BslI CCNNNNNNNGG 5 cut(s) 35, 402, 609, 1047, 1345
BsmAI GTCTC 6 cut(s) 90, 259, 578, 1197, 1376, 1703
BsmBI CGTCTC 1 cut(s) 90
BsmI GAATGC 3 cut(s) 1117, 1203, 1286
BsnI GGCC 3 cut(s) 24, 325, 1051
BsoBI CYCGRG 1 cut(s) 1611
Bsp119I TTCGAA 1 cut(s) 1733
Bsp1286I GDGCHC 2 cut(s) 1561, 1747
Bsp13I TCCGGA 2 cut(s) 75, 1924
Bsp143I GATC 3 cut(s) 856, 888, 1976
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 39, 1223
BspANI GGCC 3 cut(s) 24, 325, 1051
BspCNI CTCAG 5 cut(s) 526, 697, 698, 1679, 1903
BspEI TCCGGA 2 cut(s) 75, 1924
BspHI TCATGA 1 cut(s) 1471
BspLI GGNNCC 4 cut(s) 44, 74, 223, 1923
BspMAI CTGCAG 1 cut(s) 1965
BspPI GGATC 1 cut(s) 1984
BspT104I TTCGAA 1 cut(s) 1733
BsrDI GCAATG 1 cut(s) 1664
BsrI ACTGG 3 cut(s) 47, 1459, 1778
BssECI CCNNGG 5 cut(s) 147, 286, 995, 1526, 1916
BssMI GATC 3 cut(s) 856, 888, 1976
BssT1I CCWWGG 3 cut(s) 147, 286, 1526
Bst2UI CCWGG 3 cut(s) 11, 996, 1917
Bst4CI ACNGT 9 cut(s) 82, 249, 280, 301, 589, 802, 1058, 1373, 1677
Bst6I CTCTTC 2 cut(s) 655, 786
BstBAI YACGTR 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 1733
BstC8I GCNNGC 3 cut(s) 557, 728, 1913
BstDEI CTNAG 6 cut(s) 534, 685, 705, 771, 1666, 1890
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 844, 1522, 1976
BstKTI GATC 3 cut(s) 859, 891, 1979
BstMAI GTCTC 6 cut(s) 90, 259, 578, 1197, 1376, 1703
BstMBI GATC 3 cut(s) 856, 888, 1976
BstMWI GCNNNNNNNGC 2 cut(s) 1528, 1544
BstNI CCWGG 3 cut(s) 11, 996, 1917
BstNSI RCATGY 2 cut(s) 563, 1186
BstSCI CCNGG 3 cut(s) 9, 994, 1915
BstSFI CTRYAG 1 cut(s) 1961
BstV1I GCAGC 4 cut(s) 1093, 1889, 1944, 1947
BstV2I GAAGAC 2 cut(s) 605, 1500
BstXI CCANNNNNNTGG 1 cut(s) 1649
BsuI GTATCC 1 cut(s) 1921
BsuRI GGCC 3 cut(s) 24, 325, 1051
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 844, 1522, 1976
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 6 cut(s) 342, 1063, 1169, 1654, 1682, 1785
Cac8I GCNNGC 3 cut(s) 557, 728, 1913
CciI TCATGA 1 cut(s) 1471
Cfr13I GGNCC 4 cut(s) 7, 22, 283, 1405
Csp6I GTAC 5 cut(s) 125, 245, 988, 1303, 1757
CviAII CATG 7 cut(s) 148, 321, 560, 731, 788, 1183, 1472
CviQI GTAC 5 cut(s) 125, 245, 988, 1303, 1757
DdeI CTNAG 6 cut(s) 534, 685, 705, 771, 1666, 1890
DpnI GATC 3 cut(s) 858, 890, 1978
DpnII GATC 3 cut(s) 856, 888, 1976
DriI GACNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 2 cut(s) 655, 786
Eam1105I GACNNNNNGTC 1 cut(s) 32
EarI CTCTTC 2 cut(s) 655, 786
Ecl136II GAGCTC 2 cut(s) 1559, 1745
Eco130I CCWWGG 3 cut(s) 147, 286, 1526
Eco24I GRGCYC 2 cut(s) 1561, 1747
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 3 cut(s) 7, 283, 1405
Eco53kI GAGCTC 2 cut(s) 1559, 1745
Eco57I CTGAAG 2 cut(s) 345, 1606
Eco72I CACGTG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 1611
EcoICRI GAGCTC 2 cut(s) 1559, 1745
EcoRI GAATTC 2 cut(s) 526, 823
EcoRII CCWGG 3 cut(s) 9, 994, 1915
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 3 cut(s) 147, 286, 1526
EcoT22I ATGCAT 1 cut(s) 1288
EcoT38I GRGCYC 2 cut(s) 1561, 1747
ErhI CCWWGG 3 cut(s) 147, 286, 1526
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 7 cut(s) 151, 324, 563, 734, 791, 1186, 1475
FatI CATG 7 cut(s) 147, 320, 559, 730, 787, 1182, 1471
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 4 cut(s) 1082, 1878, 1958, 1961
FokI GGATG 3 cut(s) 851, 1509, 1983
FriOI GRGCYC 2 cut(s) 1561, 1747
Fsp4HI GCNGC 4 cut(s) 1082, 1878, 1958, 1961
FspBI CTAG 5 cut(s) 164, 828, 924, 1485, 1748
GluI GCNGC 4 cut(s) 1082, 1878, 1958, 1961
GsuI CTGGAG 2 cut(s) 1148, 1761
HaeIII GGCC 3 cut(s) 24, 325, 1051
HapII CCGG 4 cut(s) 76, 1408, 1925, 1968
Hin1II CATG 7 cut(s) 151, 324, 563, 734, 791, 1186, 1475
HincII GTYRAC 1 cut(s) 1353
HindII GTYRAC 1 cut(s) 1353
HindIII AAGCTT 3 cut(s) 103, 553, 640
HpaII CCGG 4 cut(s) 76, 1408, 1925, 1968
HphI GGTGA 7 cut(s) 100, 171, 485, 746, 979, 1555, 1630
Hpy166II GTNNAC 8 cut(s) 283, 382, 1010, 1353, 1467, 1585, 1673, 1757
Hpy188I TCNGA 8 cut(s) 117, 364, 535, 688, 706, 934, 1292, 1625
Hpy8I GTNNAC 8 cut(s) 283, 382, 1010, 1353, 1467, 1585, 1673, 1757
HpyCH4III ACNGT 9 cut(s) 82, 249, 280, 301, 589, 802, 1058, 1373, 1677
HpyCH4IV ACGT 4 cut(s) 31, 123, 1014, 1421
HpyF10VI GCNNNNNNNGC 2 cut(s) 1528, 1544
HpyF3I CTNAG 6 cut(s) 534, 685, 705, 771, 1666, 1890
HpySE526I ACGT 4 cut(s) 31, 123, 1014, 1421
Hsp92II CATG 7 cut(s) 151, 324, 563, 734, 791, 1186, 1475
Kpn2I TCCGGA 2 cut(s) 75, 1924
Kzo9I GATC 3 cut(s) 856, 888, 1976
LmnI GCTCC 3 cut(s) 221, 460, 1336
Lsp1109I GCAGC 4 cut(s) 1093, 1889, 1944, 1947
LweI GCATC 2 cut(s) 1420, 1531
MaeI CTAG 5 cut(s) 164, 828, 924, 1485, 1748
MaeII ACGT 4 cut(s) 31, 123, 1014, 1421
MaeIII GTNAC 6 cut(s) 355, 847, 926, 1211, 1636, 1780
MalI GATC 3 cut(s) 858, 890, 1978
MboI GATC 3 cut(s) 856, 888, 1976
MfeI CAATTG 2 cut(s) 398, 1306
MhlI GDGCHC 2 cut(s) 1561, 1747
MlyI GAGTC 6 cut(s) 280, 923, 1199, 1358, 1462, 1603
MmeI TCCRAC 1 cut(s) 1374
Mph1103I ATGCAT 1 cut(s) 1288
MroI TCCGGA 2 cut(s) 75, 1924
MslI CAYNNNNRTG 2 cut(s) 468, 1647
MspA1I CMGCKG 1 cut(s) 1880
MspI CCGG 4 cut(s) 76, 1408, 1925, 1968
MspR9I CCNGG 3 cut(s) 11, 996, 1917
MunI CAATTG 2 cut(s) 398, 1306
Mva1269I GAATGC 3 cut(s) 1117, 1203, 1286
MvaI CCWGG 3 cut(s) 11, 996, 1917
MwoI GCNNNNNNNGC 2 cut(s) 1528, 1544
NcoI CCATGG 1 cut(s) 147
NdeII GATC 3 cut(s) 856, 888, 1976
NlaIII CATG 7 cut(s) 151, 324, 563, 734, 791, 1186, 1475
NlaIV GGNNCC 4 cut(s) 44, 74, 223, 1923
NmuCI GTSAC 4 cut(s) 926, 1211, 1636, 1780
NsiI ATGCAT 1 cut(s) 1288
NspI RCATGY 2 cut(s) 563, 1186
NspV TTCGAA 1 cut(s) 1733
PagI TCATGA 1 cut(s) 1471
PciI ACATGT 1 cut(s) 1182
PctI GAATGC 3 cut(s) 1117, 1203, 1286
PfeI GAWTC 5 cut(s) 152, 689, 902, 977, 1166
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 4 cut(s) 1083, 1879, 1959, 1962
PleI GAGTC 6 cut(s) 279, 923, 1198, 1357, 1462, 1603
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
PpsI GAGTC 6 cut(s) 279, 923, 1198, 1357, 1462, 1603
Ppu21I YACGTR 1 cut(s) 32
PscI ACATGT 1 cut(s) 1182
Psp124BI GAGCTC 2 cut(s) 1561, 1747
Psp6I CCWGG 3 cut(s) 9, 994, 1915
PspCI CACGTG 1 cut(s) 32
PspGI CCWGG 3 cut(s) 9, 994, 1915
PspN4I GGNNCC 4 cut(s) 44, 74, 223, 1923
PspPI GGNCC 4 cut(s) 7, 22, 283, 1405
PstI CTGCAG 1 cut(s) 1965
PvuII CAGCTG 1 cut(s) 1880
RsaI GTAC 5 cut(s) 126, 246, 989, 1304, 1758
RsaNI GTAC 5 cut(s) 125, 245, 988, 1303, 1757
RseI CAYNNNNRTG 2 cut(s) 468, 1647
SacI GAGCTC 2 cut(s) 1561, 1747
SatI GCNGC 4 cut(s) 1082, 1878, 1958, 1961
Sau3AI GATC 3 cut(s) 856, 888, 1976
Sau96I GGNCC 4 cut(s) 7, 22, 283, 1405
SchI GAGTC 6 cut(s) 280, 923, 1199, 1358, 1462, 1603
ScrFI CCNGG 3 cut(s) 11, 996, 1917
SduI GDGCHC 2 cut(s) 1561, 1747
SfaNI GCATC 2 cut(s) 1420, 1531
SfcI CTRYAG 1 cut(s) 1961
SfuI TTCGAA 1 cut(s) 1733
SinI GGWCC 3 cut(s) 7, 283, 1405
SmiMI CAYNNNNRTG 2 cut(s) 468, 1647
SmlI CTYRAG 1 cut(s) 1532
SmoI CTYRAG 1 cut(s) 1532
SsiI CCGC 2 cut(s) 39, 1223
SspMI CTAG 5 cut(s) 164, 828, 924, 1485, 1748
SstI GAGCTC 2 cut(s) 1561, 1747
StyD4I CCNGG 3 cut(s) 9, 994, 1915
StyI CCWWGG 3 cut(s) 147, 286, 1526
TaaI ACNGT 9 cut(s) 82, 249, 280, 301, 589, 802, 1058, 1373, 1677
TaiI ACGT 4 cut(s) 34, 126, 1017, 1424
TaqI TCGA 2 cut(s) 1045, 1733
TatI WGTACW 2 cut(s) 1302, 1756
TfiI GAWTC 5 cut(s) 152, 689, 902, 977, 1166
TscAI CASTG 6 cut(s) 349, 1063, 1176, 1654, 1682, 1785
TseFI GTSAC 4 cut(s) 926, 1211, 1636, 1780
TseI GCWGC 4 cut(s) 1081, 1877, 1957, 1960
Tsp45I GTSAC 4 cut(s) 926, 1211, 1636, 1780
TspDTI ATGAA 5 cut(s) 17, 309, 804, 1784, 1953
TspGWI ACGGA 3 cut(s) 1199, 1823, 1839
TspRI CASTG 6 cut(s) 349, 1063, 1176, 1654, 1682, 1785
VpaK11BI GGWCC 3 cut(s) 7, 283, 1405
XbaI TCTAGA 2 cut(s) 1484, 1747
XceI RCATGY 2 cut(s) 563, 1186
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XspI CTAG 5 cut(s) 164, 828, 924, 1485, 1748
Zsp2I ATGCAT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.