Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339215.1

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 938

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 937 bp

atggttttaaagaaactagagcagtttttctcaccaaaaagaaacttaatttctgggtttgttttgggaattggagtctctctcattgtactttttgtgagcaactccttaaggagtagtagtcctacacctacagtagaggaacaggggctttataatgtttttgtaaattcttcttttgtttcaactactgcacattccattgccccagaattgcagagttctactggagaatcaaatgagtctgtaattgctggagtagtcgaaaaatttgtggaggacaatgagaatggtacaatggtcttccagaaggcccagttgggaaatattacagaggaagttgacgatagaataagcttttgggttgaagaagaaagtgtccaactgaaagatgatagctttgattcatatggggaaggaagtgttctagggattgcccagttggggaatgttacagagcaagttaaaggtgaaagcttcggggttgaagaaggaagtgttcgacaaaaagatggcaactttgattcaaacggtgaaggagggattgcccatttggggaattcctctgagattttggaatttggaagattgcatggtgcaggtgggaaagcaacggggaaatcaagcgttgctggcaaagaggaaagcgttgaagctagtttttcaaacaattctaggagtgggaatggcatggtctcagaagatgtaaaaattgaaattattggctttgattctcaaacttgggaaatgcagagtgatgatgactctgatcagaaatgtgatatttatgatggtaaatgggtaagagatgattcaatgccatactatcctggaggttcttgtccgcacattgatagggattttaattgtcacctcaatcggaggccggacgatgagtttttgaaatggaaatggcagccatatgggtgcgacatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

312

Amino Acids

34.19

Weight (kDa)

4.45

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	590
AciI	CCGC	1 cut(s)	845
AcsI	RAATTY	4 cut(s)	169, 269, 559, 578
AfaI	GTAC	2 cut(s)	90, 295
AfiI	CCNNNNNNNGG	2 cut(s)	444, 555
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	9 cut(s)	186, 368, 488, 528, 653, 666, 716, 816, 904
AjnI	CCWGG	1 cut(s)	829
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 343, 375
AluBI	AGCT	4 cut(s)	357, 399, 477, 656
AluI	AGCT	4 cut(s)	357, 399, 477, 656
Alw26I	GTCTC	2 cut(s)	82, 700
AoxI	GGCC	2 cut(s)	312, 884
ApeKI	GCWGC	1 cut(s)	916
ApoI	RAATTY	4 cut(s)	169, 269, 559, 578
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	4 cut(s)	24, 482, 545, 863
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	928
BccI	CCATC	2 cut(s)	506, 785
BciT130I	CCWGG	1 cut(s)	831
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	82, 700
BfaI	CTAG	4 cut(s)	17, 428, 657, 675
BfmI	CTRYAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	1 cut(s)	917
BlsI	GCNGC	1 cut(s)	918
Bme1390I	CCNGG	1 cut(s)	831
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	831
BmrI	ACTGGG	2 cut(s)	310, 433
BmuI	ACTGGG	2 cut(s)	310, 433
BpiI	GAAGAC	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	3 cut(s)	249, 276, 852
BsaI	GGTCTC	1 cut(s)	700
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 555
Bse1I	ACTGG	3 cut(s)	232, 316, 439
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	444, 555
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	558, 711
BseNI	ACTGG	3 cut(s)	232, 316, 439
BseXI	GCAGC	1 cut(s)	928
BsgI	GTGCAG	2 cut(s)	177, 618
BshFI	GGCC	2 cut(s)	314, 886
BsiSI	CCGG	1 cut(s)	887
BslI	CCNNNNNNNGG	2 cut(s)	444, 555
BsmAI	GTCTC	2 cut(s)	82, 700
BsnI	GGCC	2 cut(s)	314, 886
Bso31I	GGTCTC	1 cut(s)	700
Bsp143I	GATC	1 cut(s)	769
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	2 cut(s)	314, 886
BspCNI	CTCAG	2 cut(s)	559, 710
BspMI	ACCTGC	1 cut(s)	590
BspTI	CTTAAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	3 cut(s)	232, 316, 439
BssMI	GATC	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	2 cut(s)	136, 533
BstAFI	CTTAAG	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	2 cut(s)	567, 697
BstKTI	GATC	1 cut(s)	772
BstMAI	GTCTC	2 cut(s)	82, 700
BstMBI	GATC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	1 cut(s)	633
BstNI	CCWGG	1 cut(s)	831
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	928
BstV2I	GAAGAC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	314, 886
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	89, 294
CviAII	CATG	2 cut(s)	593, 691
CviJI	RGCY	9 cut(s)	151, 314, 357, 399, 477, 656, 726, 886, 919
CviKI_1	RGCY	9 cut(s)	151, 314, 357, 399, 477, 656, 726, 886, 919
CviQI	GTAC	2 cut(s)	89, 294
DdeI	CTNAG	2 cut(s)	567, 697
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
DraI	TTTAAA	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	829
FaeI	CATG	2 cut(s)	596, 694
FaiI	YATR	9 cut(s)	156, 409, 411, 594, 692, 789, 823, 922, 924
FatI	CATG	2 cut(s)	592, 690
FauNDI	CATATG	2 cut(s)	409, 922
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	1 cut(s)	917
Fsp4HI	GCNGC	1 cut(s)	917
FspBI	CTAG	4 cut(s)	17, 428, 657, 675
GluI	GCNGC	1 cut(s)	917
GsuI	CTGGAG	3 cut(s)	249, 276, 852
HaeIII	GGCC	2 cut(s)	314, 886
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	2 cut(s)	596, 694
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	355, 475
HinfI	GANTC	8 cut(s)	75, 233, 242, 404, 524, 731, 764, 812
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	4 cut(s)	24, 482, 545, 863
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	5 cut(s)	568, 700, 769, 774, 882
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	4 cut(s)	304, 410, 485, 530
HpyCH4III	ACNGT	2 cut(s)	136, 533
HpyCH4V	TGCA	5 cut(s)	194, 217, 592, 599, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	633
HpyF3I	CTNAG	2 cut(s)	567, 697
Hsp92II	CATG	2 cut(s)	596, 694
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	1 cut(s)	769
Lsp1109I	GCAGC	1 cut(s)	928
MaeI	CTAG	4 cut(s)	17, 428, 657, 675
MaeIII	GTNAC	2 cut(s)	451, 869
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MboII	GAAGA	7 cut(s)	165, 295, 380, 383, 500, 597, 713
MlyI	GAGTC	3 cut(s)	84, 251, 758
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	9 cut(s)	133, 271, 328, 533, 574, 634, 827, 876, 884
MseI	TTAA	5 cut(s)	8, 47, 110, 465, 864
MslI	CAYNNNNRTG	1 cut(s)	925
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	1 cut(s)	831
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	1 cut(s)	633
NdeI	CATATG	2 cut(s)	409, 922
NdeII	GATC	1 cut(s)	769
NlaIII	CATG	2 cut(s)	596, 694
NmuCI	GTSAC	1 cut(s)	869
PaqCI	CACCTGC	1 cut(s)	590
PfeI	GAWTC	5 cut(s)	233, 404, 524, 731, 812
PfoI	TCCNGGA	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	918
PleI	GAGTC	3 cut(s)	83, 250, 758
PpsI	GAGTC	3 cut(s)	83, 250, 758
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspPI	GGNCC	1 cut(s)	313
RsaI	GTAC	2 cut(s)	90, 295
RsaNI	GTAC	2 cut(s)	89, 294
RseI	CAYNNNNRTG	1 cut(s)	925
SaqAI	TTAA	5 cut(s)	8, 47, 110, 465, 864
SatI	GCNGC	1 cut(s)	917
Sau3AI	GATC	1 cut(s)	769
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	3 cut(s)	84, 251, 758
ScrFI	CCNGG	1 cut(s)	831
SetI	ASST	9 cut(s)	133, 359, 401, 472, 479, 604, 658, 838, 876
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	925
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SsiI	CCGC	1 cut(s)	845
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	4 cut(s)	17, 428, 657, 675
StyD4I	CCNGG	1 cut(s)	829
TaaI	ACNGT	2 cut(s)	136, 533
TaqI	TCGA	2 cut(s)	264, 502
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	5 cut(s)	233, 404, 524, 731, 812
Tru1I	TTAA	5 cut(s)	8, 47, 110, 465, 864
Tru9I	TTAA	5 cut(s)	8, 47, 110, 465, 864
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	1 cut(s)	916
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	4 cut(s)	169, 269, 559, 578
XspI	CTAG	4 cut(s)	17, 428, 657, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.