RLG00000006050

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
3878814 .. 3881249
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006050

Sequence Viewer

Length: 1845 bp
ATGGATTCCAAGAAGCTAGAGCAGTTTTTCTCACCCAGAAGAAAAGTGGTTTCTGGGTTTAGTTTGGGAATTGGAGCCTCTCTGTTTGTAATCGCCGTACTATTTGTCTCTTACTCCTTAAAGAGTCCTACTGTGGACCAAGGTTTCTATACTGTAAATTCGTCTTTTGTTTCATGGCCTTTCTCGTTTTCAAGCACTGCAAATTCTGTTACTTCAGAAATGCAAGACTCTGTGGACTTGAACAAGACCCAATTGGGGAATTTCACAGAGGAAGTTAAAGATGGAAGCTCTGGGGTTGAAGGAGGAAGGGTGGAGCATAAAGGTGGTGAGTTTGGTTCAAATGAGGGAGGGGGTGTTTTGGGGATTTTCCATTTGGGGAATTCCTCTGAGATTTTGAATAACGGAAGCTTGCATGTTGAAGGTGGAGGTGGGAAAGAGACAGTTTTGGAGAAGACCCAGATGGGGAATTTTACAGAGGCAGTTAAAGACGGAAGCTTTGTGGTTGAGGAAGGAAGAGTTCAACAGAGAGATAATAACTCAGATTCAAGAAATTCCTCTGAGATTTTGAAATTTGAGAGCTTGCATGGTGAAGGTGGGAAGGGAATTGGGAACTTAAGCCTTTCTGGGAAAGAAGATGTGCATGCAGAGAAACCAGTTGAAGGTAGTTTTTCAAAAAATTCTAGTAATGGGGATGGTAAGGTAACAGAAGATCATCAAGGAAATTCAACTCAGAAAAATGAAATCATTGAGCTTGATTCTCAAACTTGGGAAATGCCTAGTGACTCTGATAAAAAATGTGATATTTTTTATGGTAAATGGGTGAGAGATGATTCAAAGCCGTACTATCCTGGTGGTTCTTGTCCACACGTTGATAAGGTTTGGAATTGCCACTCCAATCGAAGGCCAGACAGTGCTTTCCTAAAATGGAAATGGCAGCCAAATGAGTGTGATATCCCAAGTCTGAATGCAACTGATTTTCTGGAGAGGTTGAGAGGAAAGAGGTTGGTTTTTGTGGGGGATTCACTGAATAGGAACATGTGGGAGTCACTTGTGTGCATTCTCCGTCACAGCGTTCGGCACAAGAAAAAGGTATATGAGATTTCGGGAAAGAAGGAATTTAAGAAGAAGGGGATATATGCATTCAGATTTGAGGAGTACAATTGTTCTCTGGATTTTGTGGTTGCTCCATTCCTTGTTAGGGAGTCAACATTCACAGGCAAAAACGGTTCGTTTGAGACATTGAGGTTGGATTTGATGGACCGGACTACAACAACGTATCGTGATGCTGATGTTATAGTTTTTAATACCGGTCATTGGTGGACTCATGATAAAACTTCTAGAGGAGAAGACTATTACCAAGAAGGCAACTATGTGCATCCAAGGCTCAAGGCTCTTGAAGCATACAAGAGAGCTCTCACCACTTGGGCGAGATGGGTGGACAGATACATCAATGCCAACAGGACTCGGGTTTTCTTCAGAGGATATTCAGTCACCCATTTCAGTGGAGGGCAATGGAACTCAGGTGGACAGTGCCACAAAGAAACAGAACCAATCTTTAATGAGACTTATCTTACGCATTACCCTTCGAAAATGAGAGCTCTAGAGAGTGTACTTAAAGAAATGAAAACTCCAGTGACATATCTTAACATTAGCAGGCTTACGGATTATAGAAAAGACGGACACCCTTCCATTTACAGAACGATATACAAGACAAAGGAAGAACAAATTACAGCTGAACAATCTCAGGATTGCAGTCATTGGTGCTTGCCTGGGGTTCCGGATACTTGGAACGAATTGTTATACGCTTTGCTGCTGCAGACCGGATGGGGATCAGAGCAAAAATGA

Protein Analysis

615

Amino Acids

69.57

Weight (kDa)

6.55

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 264 - 317 4.9e-20 PMR5 N terminal Domain
PC-Esterase PF13839 318 - 602 5.8e-101 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1777
AclWI GGATC 1 cut(s) 1837
AcuI CTGAAG 2 cut(s) 198, 1459
AfaI GTAC 4 cut(s) 99, 842, 1157, 1611
AfiI CCNNNNNNNGG 6 cut(s) 255, 462, 659, 900, 1198, 1314
AflII CTTAAG 1 cut(s) 613
AflIII ACRYGT 2 cut(s) 865, 1035
AgeI ACCGGT 1 cut(s) 1307
AjnI CCWGG 2 cut(s) 847, 1768
AleI CACNNNNGTG 1 cut(s) 1051
AluBI AGCT 9 cut(s) 16, 288, 408, 495, 579, 751, 1412, 1598, 1733
AluI AGCT 9 cut(s) 16, 288, 408, 495, 579, 751, 1412, 1598, 1733
Alw21I GWGCWC 2 cut(s) 1414, 1600
Alw26I GTCTC 4 cut(s) 112, 431, 1229, 1556
AlwI GGATC 1 cut(s) 1837
Ama87I CYCGRG 1 cut(s) 1464
Aor13HI TCCGGA 1 cut(s) 1777
AoxI GGCC 2 cut(s) 176, 902
ApeKI GCWGC 3 cut(s) 934, 1810, 1813
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AsiGI ACCGGT 1 cut(s) 1307
AspS9I GGNCC 2 cut(s) 136, 1258
AsuHPI GGTGA 6 cut(s) 24, 338, 599, 832, 1408, 1483
AsuII TTCGAA 1 cut(s) 1586
AvaI CYCGRG 1 cut(s) 1464
AvaII GGWCC 2 cut(s) 136, 1258
BanII GRGCYC 2 cut(s) 1414, 1600
BbsI GAAGAC 2 cut(s) 458, 1353
Bbv12I GWGCWC 2 cut(s) 1414, 1600
BbvI GCAGC 3 cut(s) 946, 1797, 1800
BccI CCATC 6 cut(s) 275, 454, 686, 1249, 1425, 1818
BceAI ACGGC 2 cut(s) 80, 823
BciT130I CCWGG 2 cut(s) 849, 1770
BciVI GTATCC 1 cut(s) 1774
BcoDI GTCTC 4 cut(s) 112, 431, 1229, 1556
BfaI CTAG 5 cut(s) 17, 681, 777, 1338, 1601
BfmI CTRYAG 1 cut(s) 1814
BfrI CTTAAG 1 cut(s) 613
BfuI GTATCC 1 cut(s) 1774
BisI GCNGC 3 cut(s) 935, 1811, 1814
BlsI GCNGC 3 cut(s) 936, 1812, 1815
Bme1390I CCNGG 2 cut(s) 849, 1770
Bme18I GGWCC 2 cut(s) 136, 1258
BmeT110I CYCGRG 1 cut(s) 1464
BmgT120I GGNCC 2 cut(s) 136, 1258
BmiI GGNNCC 2 cut(s) 76, 1776
BmrFI CCNGG 2 cut(s) 849, 1770
BmsI GCATC 2 cut(s) 1273, 1384
BpiI GAAGAC 2 cut(s) 458, 1353
BpmI CTGGAG 2 cut(s) 1001, 1614
Bpu14I TTCGAA 1 cut(s) 1586
BpuEI CTTGAG 1 cut(s) 1370
BsaBI GATNNNNATC 1 cut(s) 1828
BsaJI CCNNGG 3 cut(s) 139, 1379, 1769
BsaWI WCCGGW 4 cut(s) 1260, 1307, 1777, 1820
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 339, 369
Bsc4I CCNNNNNNNGG 6 cut(s) 255, 462, 659, 900, 1198, 1314
Bse118I RCCGGY 1 cut(s) 1307
Bse1I ACTGG 2 cut(s) 653, 1631
Bse3DI GCAATG 1 cut(s) 1517
Bse8I GATNNNNATC 1 cut(s) 1828
BseAI TCCGGA 1 cut(s) 1777
BseBI CCWGG 2 cut(s) 849, 1770
BseDI CCNNGG 3 cut(s) 139, 1379, 1769
BseGI GGATG 3 cut(s) 697, 1375, 1829
BseJI GATNNNNATC 1 cut(s) 1828
BseLI CCNNNNNNNGG 6 cut(s) 255, 462, 659, 900, 1198, 1314
BseMI GCAATG 1 cut(s) 1517
BseMII CTCAG 6 cut(s) 378, 549, 552, 743, 1533, 1757
BseNI ACTGG 2 cut(s) 653, 1631
BseRI GAGGAG 2 cut(s) 1166, 1356
BseXI GCAGC 3 cut(s) 946, 1797, 1800
BshFI GGCC 2 cut(s) 178, 904
BshTI ACCGGT 1 cut(s) 1307
BsiHKAI GWGCWC 2 cut(s) 1414, 1600
BsiHKCI CYCGRG 1 cut(s) 1464
BsiSI CCGG 4 cut(s) 1261, 1308, 1778, 1821
BslI CCNNNNNNNGG 6 cut(s) 255, 462, 659, 900, 1198, 1314
BsmAI GTCTC 4 cut(s) 112, 431, 1229, 1556
BsmI GAATGC 3 cut(s) 970, 1056, 1139
BsnI GGCC 2 cut(s) 178, 904
BsoBI CYCGRG 1 cut(s) 1464
Bsp119I TTCGAA 1 cut(s) 1586
Bsp1286I GDGCHC 2 cut(s) 1414, 1600
Bsp13I TCCGGA 1 cut(s) 1777
Bsp143I GATC 2 cut(s) 709, 1829
BspANI GGCC 2 cut(s) 178, 904
BspCNI CTCAG 6 cut(s) 379, 550, 551, 742, 1532, 1756
BspEI TCCGGA 1 cut(s) 1777
BspHI TCATGA 1 cut(s) 1324
BspLI GGNNCC 2 cut(s) 76, 1776
BspMAI CTGCAG 1 cut(s) 1818
BspPI GGATC 1 cut(s) 1837
BspT104I TTCGAA 1 cut(s) 1586
BspTI CTTAAG 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 1517
BsrFI RCCGGY 1 cut(s) 1307
BsrI ACTGG 2 cut(s) 653, 1631
BssAI RCCGGY 1 cut(s) 1307
BssECI CCNNGG 3 cut(s) 139, 1379, 1769
BssMI GATC 2 cut(s) 709, 1829
BssT1I CCWWGG 2 cut(s) 139, 1379
Bst2UI CCWGG 2 cut(s) 849, 1770
Bst4CI ACNGT 6 cut(s) 133, 154, 442, 911, 1226, 1530
Bst6I CTCTTC 1 cut(s) 508
BstAFI CTTAAG 1 cut(s) 613
BstBI TTCGAA 1 cut(s) 1586
BstC8I GCNNGC 5 cut(s) 410, 581, 642, 1655, 1766
BstDEI CTNAG 6 cut(s) 387, 538, 558, 729, 1519, 1743
BstF5I GGATG 3 cut(s) 697, 1375, 1829
BstKTI GATC 2 cut(s) 712, 1832
BstMAI GTCTC 4 cut(s) 112, 431, 1229, 1556
BstMBI GATC 2 cut(s) 709, 1829
BstMWI GCNNNNNNNGC 2 cut(s) 1381, 1397
BstNI CCWGG 2 cut(s) 849, 1770
BstNSI RCATGY 3 cut(s) 416, 644, 1039
BstSCI CCNGG 2 cut(s) 847, 1768
BstSFI CTRYAG 1 cut(s) 1814
BstV1I GCAGC 3 cut(s) 946, 1797, 1800
BstV2I GAAGAC 2 cut(s) 458, 1353
BstXI CCANNNNNNTGG 1 cut(s) 1502
BsuI GTATCC 1 cut(s) 1774
BsuRI GGCC 2 cut(s) 178, 904
BtsCI GGATG 3 cut(s) 697, 1375, 1829
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 6 cut(s) 195, 916, 1022, 1507, 1535, 1638
Cac8I GCNNGC 5 cut(s) 410, 581, 642, 1655, 1766
CciI TCATGA 1 cut(s) 1324
Cfr10I RCCGGY 1 cut(s) 1307
Cfr13I GGNCC 2 cut(s) 136, 1258
Csp6I GTAC 4 cut(s) 98, 841, 1156, 1610
CspAI ACCGGT 1 cut(s) 1307
CviAII CATG 6 cut(s) 174, 413, 584, 641, 1036, 1325
CviQI GTAC 4 cut(s) 98, 841, 1156, 1610
DdeI CTNAG 6 cut(s) 387, 538, 558, 729, 1519, 1743
DpnI GATC 2 cut(s) 711, 1831
DpnII GATC 2 cut(s) 709, 1829
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
Ecl136II GAGCTC 2 cut(s) 1412, 1598
Eco130I CCWWGG 2 cut(s) 139, 1379
Eco24I GRGCYC 2 cut(s) 1414, 1600
Eco32I GATATC 1 cut(s) 952
Eco47I GGWCC 2 cut(s) 136, 1258
Eco53kI GAGCTC 2 cut(s) 1412, 1598
Eco57I CTGAAG 2 cut(s) 198, 1459
Eco88I CYCGRG 1 cut(s) 1464
EcoICRI GAGCTC 2 cut(s) 1412, 1598
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 847, 1768
EcoRV GATATC 1 cut(s) 952
EcoT14I CCWWGG 2 cut(s) 139, 1379
EcoT22I ATGCAT 1 cut(s) 1141
EcoT38I GRGCYC 2 cut(s) 1414, 1600
ErhI CCWWGG 2 cut(s) 139, 1379
FaeI CATG 6 cut(s) 177, 416, 587, 644, 1039, 1328
FatI CATG 6 cut(s) 173, 412, 583, 640, 1035, 1324
Fnu4HI GCNGC 3 cut(s) 935, 1811, 1814
FokI GGATG 3 cut(s) 704, 1362, 1836
FriOI GRGCYC 2 cut(s) 1414, 1600
Fsp4HI GCNGC 3 cut(s) 935, 1811, 1814
FspBI CTAG 5 cut(s) 17, 681, 777, 1338, 1601
GluI GCNGC 3 cut(s) 935, 1811, 1814
GsuI CTGGAG 2 cut(s) 1001, 1614
HaeIII GGCC 2 cut(s) 178, 904
HapII CCGG 4 cut(s) 1261, 1308, 1778, 1821
Hin1II CATG 6 cut(s) 177, 416, 587, 644, 1039, 1328
HincII GTYRAC 1 cut(s) 1206
HindII GTYRAC 1 cut(s) 1206
HindIII AAGCTT 2 cut(s) 406, 493
HpaII CCGG 4 cut(s) 1261, 1308, 1778, 1821
HphI GGTGA 6 cut(s) 24, 338, 599, 832, 1408, 1483
Hpy166II GTNNAC 8 cut(s) 136, 235, 863, 1206, 1320, 1438, 1526, 1610
Hpy8I GTNNAC 8 cut(s) 136, 235, 863, 1206, 1320, 1438, 1526, 1610
HpyCH4III ACNGT 6 cut(s) 133, 154, 442, 911, 1226, 1530
HpyCH4IV ACGT 2 cut(s) 867, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 1381, 1397
HpyF3I CTNAG 6 cut(s) 387, 538, 558, 729, 1519, 1743
HpySE526I ACGT 2 cut(s) 867, 1274
Hsp92II CATG 6 cut(s) 177, 416, 587, 644, 1039, 1328
Kpn2I TCCGGA 1 cut(s) 1777
Kzo9I GATC 2 cut(s) 709, 1829
LmnI GCTCC 3 cut(s) 74, 313, 1189
Lsp1109I GCAGC 3 cut(s) 946, 1797, 1800
LweI GCATC 2 cut(s) 1273, 1384
MaeI CTAG 5 cut(s) 17, 681, 777, 1338, 1601
MaeII ACGT 2 cut(s) 867, 1274
MaeIII GTNAC 7 cut(s) 208, 700, 779, 1044, 1064, 1489, 1633
MalI GATC 2 cut(s) 711, 1831
MboI GATC 2 cut(s) 709, 1829
MboII GAAGA 9 cut(s) 51, 463, 525, 644, 719, 1135, 1358, 1465, 1730
MfeI CAATTG 2 cut(s) 251, 1159
MhlI GDGCHC 2 cut(s) 1414, 1600
MlyI GAGTC 7 cut(s) 133, 221, 776, 1052, 1211, 1315, 1456
MmeI TCCRAC 1 cut(s) 1227
Mph1103I ATGCAT 1 cut(s) 1141
MroI TCCGGA 1 cut(s) 1777
MseI TTAA 9 cut(s) 119, 276, 483, 614, 1119, 1302, 1557, 1614, 1644
MslI CAYNNNNRTG 3 cut(s) 321, 1051, 1500
MspA1I CMGCKG 1 cut(s) 1733
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 4 cut(s) 1261, 1308, 1778, 1821
MspR9I CCNGG 2 cut(s) 849, 1770
MunI CAATTG 2 cut(s) 251, 1159
Mva1269I GAATGC 3 cut(s) 970, 1056, 1139
MvaI CCWGG 2 cut(s) 849, 1770
MwoI GCNNNNNNNGC 2 cut(s) 1381, 1397
NdeII GATC 2 cut(s) 709, 1829
NlaIII CATG 6 cut(s) 177, 416, 587, 644, 1039, 1328
NlaIV GGNNCC 2 cut(s) 76, 1776
NmuCI GTSAC 5 cut(s) 779, 1044, 1064, 1489, 1633
NsiI ATGCAT 1 cut(s) 1141
NspI RCATGY 3 cut(s) 416, 644, 1039
NspV TTCGAA 1 cut(s) 1586
OliI CACNNNNGTG 1 cut(s) 1051
PaeI GCATGC 1 cut(s) 644
PagI TCATGA 1 cut(s) 1324
PciI ACATGT 1 cut(s) 1035
PctI GAATGC 3 cut(s) 970, 1056, 1139
PfeI GAWTC 5 cut(s) 5, 542, 755, 830, 1019
PinAI ACCGGT 1 cut(s) 1307
PkrI GCNGC 3 cut(s) 936, 1812, 1815
PleI GAGTC 7 cut(s) 132, 221, 776, 1051, 1210, 1315, 1456
PpsI GAGTC 7 cut(s) 132, 221, 776, 1051, 1210, 1315, 1456
PscI ACATGT 1 cut(s) 1035
Psp124BI GAGCTC 2 cut(s) 1414, 1600
Psp6I CCWGG 2 cut(s) 847, 1768
PspGI CCWGG 2 cut(s) 847, 1768
PspN4I GGNNCC 2 cut(s) 76, 1776
PspPI GGNCC 2 cut(s) 136, 1258
PstI CTGCAG 1 cut(s) 1818
PvuII CAGCTG 1 cut(s) 1733
RsaI GTAC 4 cut(s) 99, 842, 1157, 1611
RsaNI GTAC 4 cut(s) 98, 841, 1156, 1610
RseI CAYNNNNRTG 3 cut(s) 321, 1051, 1500
SacI GAGCTC 2 cut(s) 1414, 1600
SaqAI TTAA 9 cut(s) 119, 276, 483, 614, 1119, 1302, 1557, 1614, 1644
SatI GCNGC 3 cut(s) 935, 1811, 1814
Sau3AI GATC 2 cut(s) 709, 1829
Sau96I GGNCC 2 cut(s) 136, 1258
SchI GAGTC 7 cut(s) 133, 221, 776, 1052, 1211, 1315, 1456
ScrFI CCNGG 2 cut(s) 849, 1770
SduI GDGCHC 2 cut(s) 1414, 1600
SfaNI GCATC 2 cut(s) 1273, 1384
SfcI CTRYAG 1 cut(s) 1814
SfuI TTCGAA 1 cut(s) 1586
SinI GGWCC 2 cut(s) 136, 1258
SmiMI CAYNNNNRTG 3 cut(s) 321, 1051, 1500
SmlI CTYRAG 2 cut(s) 613, 1385
SmoI CTYRAG 2 cut(s) 613, 1385
SphI GCATGC 1 cut(s) 644
SspMI CTAG 5 cut(s) 17, 681, 777, 1338, 1601
SstI GAGCTC 2 cut(s) 1414, 1600
StyD4I CCNGG 2 cut(s) 847, 1768
StyI CCWWGG 2 cut(s) 139, 1379
TaaI ACNGT 6 cut(s) 133, 154, 442, 911, 1226, 1530
TaiI ACGT 2 cut(s) 870, 1277
TaqI TCGA 2 cut(s) 898, 1586
TatI WGTACW 2 cut(s) 1155, 1609
TfiI GAWTC 5 cut(s) 5, 542, 755, 830, 1019
Tru1I TTAA 9 cut(s) 119, 276, 483, 614, 1119, 1302, 1557, 1614, 1644
Tru9I TTAA 9 cut(s) 119, 276, 483, 614, 1119, 1302, 1557, 1614, 1644
TscAI CASTG 6 cut(s) 202, 916, 1029, 1507, 1535, 1638
TseFI GTSAC 5 cut(s) 779, 1044, 1064, 1489, 1633
TseI GCWGC 3 cut(s) 934, 1810, 1813
Tsp45I GTSAC 5 cut(s) 779, 1044, 1064, 1489, 1633
TspDTI ATGAA 3 cut(s) 162, 753, 1637
TspGWI ACGGA 5 cut(s) 417, 504, 1052, 1676, 1692
TspRI CASTG 6 cut(s) 202, 916, 1029, 1507, 1535, 1638
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 136, 1258
XbaI TCTAGA 2 cut(s) 1337, 1600
XceI RCATGY 3 cut(s) 416, 644, 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 5 cut(s) 17, 681, 777, 1338, 1601
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.