Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Reverse (-)

57665888 .. 57667999

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTTTTAAAGAAACTAGAGCAGTTTTTCTCACCAAAAAGAAACTTAATTTCTGGGTTTGTTTTGGGAATTGGAGTCGTTCTCATTGTACTTTTTGTGAGCAGCTCCTTAAAGAGTAGTAGTCCTACACCTACAGTAGAGGAACAGGGTCTTTATAATGTTTTTGTAAATTCCTCTTTTGTTTCAACTACTGCACATTCCATTGCCCCAGAATTGCAGAGTTCTACTGGAGAATCAAATGATTCTGTAATTGCTGGAGTAGACGAAAAATTTGTGGAGGGCAATGAGAATGGTACGATGGTCTTCCAGAAGGCCCAGTTGGGAAATATTACAGAGGAAGTTGACGATAGAATAAGCTTTTGGGTTGAAGAAGAAAGTGTCCAACTGAAAGATGATAGCTTTGATTCATATGAGGAAGGAAGTGTTCTAGGGATTGCCCAGTTGGGGAATGTTACAGAGCAAGTTAAAGGTGGGAAAGCAACGGGGAAATCAAGCGTTGCTGGCAAAGAGGAAAGAGTTGAAGCTAGTTTTTCAAACAATTCTAGGAGTGGGAATGGCATGGTCACAGAAGATGTAAAAATTGAAATGATTGGCATTGATTCTCAAACTTGGGAAATGCAGAGTGATGATGACTCTTATCAGAAATGTGATATTTATGATGGTAAATGGGTAAGAGATGATTCCATGCCATACTATCCTGGAGGTTCTTGTCCGCACATTGATAGGGATTTTAATTGTCACCTCAATCGGAGGCCGGACGATGAGTTTTTAAAATGGAAATGGCAGCCATATGGGTGCGACATCTCAAGTCTGAATGCAACTGATTTTCTGGAGAGGTTGAGGGGAAAGAGGCTGGTTTTTGTGGGAGATTCGCTGAATAGGAACATGTGGGAGTCTCTGGTGTGCATTCTACGCCACAGAGTCCGACAGAAGAATAAAGTTTATGAGCTTTCAGGAAAGTCGCAATTTAAGAAGAGGGGCATTTATTCATTCAAGTTTGAGGCAAGTCTCCAGTTTGATCTCAAGCAATATATACATATATACTATTCTTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

352

Amino Acids

39.71

Weight (kDa)

5.12

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	214 - 267	2.3e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	269 - 334	3.8e-19	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	1 cut(s)	713
AcsI	RAATTY	2 cut(s)	169, 269
AfaI	GTAC	2 cut(s)	90, 295
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	6 cut(s)	186, 368, 521, 534, 584, 994
AjnI	CCWGG	1 cut(s)	697
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 343, 375
AluBI	AGCT	5 cut(s)	105, 357, 399, 524, 949
AluI	AGCT	5 cut(s)	105, 357, 399, 524, 949
Alw26I	GTCTC	2 cut(s)	900, 1013
AoxI	GGCC	2 cut(s)	312, 752
ApeKI	GCWGC	2 cut(s)	102, 784
ApoI	RAATTY	2 cut(s)	169, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	24, 731
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	114, 796
BccI	CCATC	2 cut(s)	292, 653
BciT130I	CCWGG	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	900, 1013
BfaI	CTAG	4 cut(s)	17, 428, 525, 543
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	103, 785
BlsI	GCNGC	2 cut(s)	104, 786
Bme1390I	CCNGG	1 cut(s)	699
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	699
BmrI	ACTGGG	2 cut(s)	310, 433
BmuI	ACTGGG	2 cut(s)	310, 433
BpiI	GAAGAC	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	5 cut(s)	249, 276, 720, 851, 995
BpuEI	CTTGAG	2 cut(s)	790, 1007
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	4 cut(s)	232, 316, 439, 1012
Bse3DI	GCAATG	2 cut(s)	201, 289
BseBI	CCWGG	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	2 cut(s)	201, 289
BseNI	ACTGG	4 cut(s)	232, 316, 439, 1012
BseXI	GCAGC	2 cut(s)	114, 796
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	314, 754
BsiSI	CCGG	1 cut(s)	755
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	900, 1013
BsmI	GAATGC	2 cut(s)	820, 906
BsnI	GGCC	2 cut(s)	314, 754
Bsp143I	GATC	1 cut(s)	1018
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	2 cut(s)	314, 754
BsrDI	GCAATG	2 cut(s)	201, 289
BsrI	ACTGG	4 cut(s)	232, 316, 439, 1012
BssMI	GATC	1 cut(s)	1018
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	968
BstC8I	GCNNGC	1 cut(s)	502
BstKTI	GATC	1 cut(s)	1021
BstMAI	GTCTC	2 cut(s)	900, 1013
BstMBI	GATC	1 cut(s)	1018
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 912
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	114, 796
BstV2I	GAAGAC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	314, 754
Cac8I	GCNNGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	89, 294
CviAII	CATG	3 cut(s)	559, 685, 886
CviJI	RGCY	9 cut(s)	105, 314, 357, 399, 524, 754, 787, 853, 949
CviKI_1	RGCY	9 cut(s)	105, 314, 357, 399, 524, 754, 787, 853, 949
CviQI	GTAC	2 cut(s)	89, 294
DpnI	GATC	1 cut(s)	1020
DpnII	GATC	1 cut(s)	1018
DraI	TTTAAA	2 cut(s)	9, 771
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
EcoRII	CCWGG	1 cut(s)	697
FaeI	CATG	3 cut(s)	562, 688, 889
FatI	CATG	3 cut(s)	558, 684, 885
FauNDI	CATATG	2 cut(s)	409, 790
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	103, 785
Fsp4HI	GCNGC	2 cut(s)	103, 785
FspBI	CTAG	4 cut(s)	17, 428, 525, 543
GluI	GCNGC	2 cut(s)	103, 785
GsuI	CTGGAG	5 cut(s)	249, 276, 720, 851, 995
HaeIII	GGCC	2 cut(s)	314, 754
HapII	CCGG	1 cut(s)	755
Hin1II	CATG	3 cut(s)	562, 688, 889
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	355
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	2 cut(s)	24, 731
Hpy166II	GTNNAC	2 cut(s)	262, 343
Hpy188I	TCNGA	4 cut(s)	642, 750, 813, 926
Hpy188III	TCNNGA	3 cut(s)	307, 830, 954
Hpy8I	GTNNAC	2 cut(s)	262, 343
HpyAV	CCTTC	2 cut(s)	304, 410
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	194, 217, 619, 818, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 912
Hsp92II	CATG	3 cut(s)	562, 688, 889
Kzo9I	GATC	1 cut(s)	1018
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	2 cut(s)	114, 796
MaeI	CTAG	4 cut(s)	17, 428, 525, 543
MaeIII	GTNAC	3 cut(s)	451, 562, 737
MalI	GATC	1 cut(s)	1020
MboI	GATC	1 cut(s)	1018
MboII	GAAGA	7 cut(s)	295, 380, 383, 581, 943, 985, 1041
MlyI	GAGTC	4 cut(s)	84, 626, 902, 930
MmeI	TCCRAC	2 cut(s)	406, 949
MseI	TTAA	7 cut(s)	8, 47, 110, 465, 732, 770, 969
MslI	CAYNNNNRTG	1 cut(s)	793
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	699
Mva1269I	GAATGC	2 cut(s)	820, 906
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	2 cut(s)	501, 912
NdeI	CATATG	2 cut(s)	409, 790
NdeII	GATC	1 cut(s)	1018
NlaIII	CATG	3 cut(s)	562, 688, 889
NmuCI	GTSAC	2 cut(s)	562, 737
NspI	RCATGY	1 cut(s)	889
PciI	ACATGT	1 cut(s)	885
PctI	GAATGC	2 cut(s)	820, 906
PfeI	GAWTC	6 cut(s)	233, 242, 404, 599, 680, 869
PfoI	TCCNGGA	1 cut(s)	697
PkrI	GCNGC	2 cut(s)	104, 786
PleI	GAGTC	4 cut(s)	83, 626, 901, 929
PpsI	GAGTC	4 cut(s)	83, 626, 901, 929
PscI	ACATGT	1 cut(s)	885
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspPI	GGNCC	1 cut(s)	313
RsaI	GTAC	2 cut(s)	90, 295
RsaNI	GTAC	2 cut(s)	89, 294
RseI	CAYNNNNRTG	1 cut(s)	793
SaqAI	TTAA	7 cut(s)	8, 47, 110, 465, 732, 770, 969
SatI	GCNGC	2 cut(s)	103, 785
Sau3AI	GATC	1 cut(s)	1018
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	4 cut(s)	84, 626, 902, 930
ScrFI	CCNGG	1 cut(s)	699
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	793
SmlI	CTYRAG	2 cut(s)	805, 1022
SmoI	CTYRAG	2 cut(s)	805, 1022
SsiI	CCGC	1 cut(s)	713
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	4 cut(s)	17, 428, 525, 543
StyD4I	CCNGG	1 cut(s)	697
TaaI	ACNGT	1 cut(s)	136
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	6 cut(s)	233, 242, 404, 599, 680, 869
Tru1I	TTAA	7 cut(s)	8, 47, 110, 465, 732, 770, 969
Tru9I	TTAA	7 cut(s)	8, 47, 110, 465, 732, 770, 969
TseFI	GTSAC	2 cut(s)	562, 737
TseI	GCWGC	2 cut(s)	102, 784
Tsp45I	GTSAC	2 cut(s)	562, 737
TspDTI	ATGAA	2 cut(s)	396, 978
XapI	RAATTY	2 cut(s)	169, 269
XceI	RCATGY	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	4 cut(s)	17, 428, 525, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.