Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Forward (+)

61294509 .. 61297342

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCATTGTGTTTCAGCCATGGATTCCAAGAAGCTAGAGCAGTTTTTCTCACCCAGAAGAAAAGTGGTTTCTGGGTTTAGTTTCGGAATTGGAGCCTCTCTGTTTGTAATCGCCGTACTGTTTGTCTCTTACTCCTTAAAGAGTCCTACTGTGGACCAAGGTTTCTATACTGTAAATTCCTCTTTTGTTTCTTGGCCTTTCTCGTTTTCAAGCACTGCAAATGCTGTTACTTCAGAAATGCAGGACTCTGTGGACTTGAACAAGACCCAATTGGGGAATTTCACAGAGGAAGTTAAAGATGGAAGCTCTGGGGTTGAAGGAGGAAGGGTGGAGCATAAAGATGGTGAGTTTGGTTCAAATGAGGGAGGGGGTGTTTTGGGGATTTTCCATTTGGGGAATTCCTCTGAGATTTTGAATAATGGAAGCTTGCATGTTGAAGGTGGAGGTGGGAAAGAGACAGTTTTGGAGAAGACCCAGATGGGGAATTTTACAGAGGCAGTTAAAGATGGAAGCTTTGTGGTTGAGGAAGGAAGAGTTCAACAGAAAGATAATAACTCAGATTCAAGAAACTCCTCTGAGATTTTGAAATTTGAGAGCTTGCATGGTGAAGGTGGGAAGGGAATTGGGAATTTAAGCCTTTCTAAGAAAGAAGATGTGCATGAAGAGAAAACAGTTGAAGGTAGTTTTTCAAAGAATTCTAGTAATGGGGATGGTAAGGTAACAGAAGATCATCAAGGAAATTCAACACAGAAAAATGAAATCATTGAGCTTGATTCTCAAACTTGGGAAATGCCTAGTGACTCTGATAAAAAATGTGATATTTTTGATGGTAAATGGGTGAGAGATGATTCAAAGCCGTACTATCCTGGAGGTTCTTGTCCACACGTTGATAAGGTTTGGAATTGCCACTCCAATCGAAGGCCAGACAGTGCTTTCCTAAAATGGAAATGGCAGCCAAATGGGTGTGATATCCCAAGTTTGAATGCAACTGATTTTCTGGAGAGGTTGAGAGGAAAGAGGTTGGTTTTTGTGGGGGATTCACTGAATAGGAACATGTGGGAGTCTCTTGTGTGCATTCTCCGTCACAGCGTTCCGCACAAGAAAAAGGTATATGAGATTTCGGGAAAGAAGGAATTTAAGAAGAAGGGGATATATGCATTCAGATTTGAGGAGTACAATTGTTCTCTGGATTTTGTGGTTGCTCCATTCCTTGTTAGGGAGTCAACATTCACAGGCAAAAACGGTTCGTTTGAGACATTGAGGTTGGATTTGATGGACCGGACTACAACAACGTATCGTGATGCTGATGTTATAGTTTTTAATACTGGTCATTGGTGGACTCATGAGAAAACTTCTAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

454

Amino Acids

50.64

Weight (kDa)

5.96

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	270 - 323	5.2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	324 - 451	9.8e-41	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1094
AcsI	RAATTY	9 cut(s)	175, 277, 397, 484, 587, 628, 694, 739, 1133
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	117, 860, 1175
AfiI	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
AflIII	ACRYGT	2 cut(s)	883, 1053
AjnI	CCWGG	1 cut(s)	865
AluBI	AGCT	6 cut(s)	34, 306, 426, 513, 597, 769
AluI	AGCT	6 cut(s)	34, 306, 426, 513, 597, 769
Alw26I	GTCTC	4 cut(s)	130, 449, 1068, 1247
AoxI	GGCC	2 cut(s)	194, 920
ApeKI	GCWGC	1 cut(s)	952
ApoI	RAATTY	9 cut(s)	175, 277, 397, 484, 587, 628, 694, 739, 1133
AspS9I	GGNCC	2 cut(s)	154, 1276
AsuHPI	GGTGA	4 cut(s)	42, 356, 617, 850
AvaII	GGWCC	2 cut(s)	154, 1276
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	7 cut(s)	293, 335, 472, 500, 704, 821, 1267
BceAI	ACGGC	2 cut(s)	98, 841
BciT130I	CCWGG	1 cut(s)	867
BcoDI	GTCTC	4 cut(s)	130, 449, 1068, 1247
BfaI	CTAG	4 cut(s)	35, 699, 795, 1356
BisI	GCNGC	1 cut(s)	953
BlsI	GCNGC	1 cut(s)	954
Bme1390I	CCNGG	1 cut(s)	867
Bme18I	GGWCC	2 cut(s)	154, 1276
BmgT120I	GGNCC	2 cut(s)	154, 1276
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	867
BmsI	GCATC	1 cut(s)	1291
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	2 cut(s)	888, 1019
BsaJI	CCNNGG	2 cut(s)	18, 157
BsaWI	WCCGGW	1 cut(s)	1278
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 357, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
Bse1I	ACTGG	1 cut(s)	1330
BseBI	CCWGG	1 cut(s)	867
BseDI	CCNNGG	2 cut(s)	18, 157
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
BseMII	CTCAG	3 cut(s)	396, 567, 570
BseNI	ACTGG	1 cut(s)	1330
BseRI	GAGGAG	2 cut(s)	562, 1184
BseXI	GCAGC	1 cut(s)	964
BshFI	GGCC	2 cut(s)	196, 922
BsiSI	CCGG	1 cut(s)	1279
BslI	CCNNNNNNNGG	4 cut(s)	273, 480, 918, 1216
BsmAI	GTCTC	4 cut(s)	130, 449, 1068, 1247
BsmI	GAATGC	3 cut(s)	988, 1074, 1157
BsnI	GGCC	2 cut(s)	196, 922
Bsp143I	GATC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	1 cut(s)	1094
BspANI	GGCC	2 cut(s)	196, 922
BspCNI	CTCAG	3 cut(s)	397, 568, 569
BspHI	TCATGA	1 cut(s)	1342
BspLI	GGNNCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	1330
BssECI	CCNNGG	2 cut(s)	18, 157
BssMI	GATC	1 cut(s)	727
BssT1I	CCWWGG	2 cut(s)	18, 157
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	7 cut(s)	120, 151, 172, 460, 673, 929, 1244
Bst6I	CTCTTC	2 cut(s)	526, 657
BstC8I	GCNNGC	2 cut(s)	428, 599
BstDEI	CTNAG	4 cut(s)	405, 556, 576, 642
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	715
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	4 cut(s)	130, 449, 1068, 1247
BstMBI	GATC	1 cut(s)	727
BstNI	CCWGG	1 cut(s)	867
BstNSI	RCATGY	2 cut(s)	434, 1057
BstSCI	CCNGG	1 cut(s)	865
BstV1I	GCAGC	1 cut(s)	964
BstV2I	GAAGAC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	196, 922
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 934, 1040
Cac8I	GCNNGC	2 cut(s)	428, 599
CciI	TCATGA	1 cut(s)	1342
Cfr13I	GGNCC	2 cut(s)	154, 1276
Csp6I	GTAC	3 cut(s)	116, 859, 1174
CviAII	CATG	6 cut(s)	19, 431, 602, 659, 1054, 1343
CviQI	GTAC	3 cut(s)	116, 859, 1174
DdeI	CTNAG	4 cut(s)	405, 556, 576, 642
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
Eam1104I	CTCTTC	2 cut(s)	526, 657
EarI	CTCTTC	2 cut(s)	526, 657
Eco130I	CCWWGG	2 cut(s)	18, 157
Eco32I	GATATC	1 cut(s)	970
Eco47I	GGWCC	2 cut(s)	154, 1276
Eco57I	CTGAAG	1 cut(s)	216
EcoRI	GAATTC	2 cut(s)	397, 694
EcoRII	CCWGG	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	970
EcoT14I	CCWWGG	2 cut(s)	18, 157
EcoT22I	ATGCAT	2 cut(s)	6, 1159
ErhI	CCWWGG	2 cut(s)	18, 157
FaeI	CATG	6 cut(s)	22, 434, 605, 662, 1057, 1346
FatI	CATG	6 cut(s)	18, 430, 601, 658, 1053, 1342
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	1 cut(s)	953
FspBI	CTAG	4 cut(s)	35, 699, 795, 1356
GluI	GCNGC	1 cut(s)	953
GsuI	CTGGAG	2 cut(s)	888, 1019
HaeIII	GGCC	2 cut(s)	196, 922
HapII	CCGG	1 cut(s)	1279
Hin1II	CATG	6 cut(s)	22, 434, 605, 662, 1057, 1346
HincII	GTYRAC	1 cut(s)	1224
HindII	GTYRAC	1 cut(s)	1224
HindIII	AAGCTT	2 cut(s)	424, 511
HpaII	CCGG	1 cut(s)	1279
HphI	GGTGA	4 cut(s)	42, 356, 617, 850
Hpy166II	GTNNAC	5 cut(s)	154, 253, 881, 1224, 1338
Hpy188I	TCNGA	7 cut(s)	86, 235, 406, 559, 577, 805, 1163
Hpy188III	TCNNGA	7 cut(s)	564, 998, 1122, 1187, 1298, 1343, 1356
Hpy8I	GTNNAC	5 cut(s)	154, 253, 881, 1224, 1338
HpyCH4III	ACNGT	7 cut(s)	120, 151, 172, 460, 673, 929, 1244
HpyCH4IV	ACGT	2 cut(s)	885, 1292
HpyCH4V	TGCA	9 cut(s)	4, 218, 241, 430, 601, 658, 986, 1074, 1157
HpyF3I	CTNAG	4 cut(s)	405, 556, 576, 642
HpySE526I	ACGT	2 cut(s)	885, 1292
Hsp92II	CATG	6 cut(s)	22, 434, 605, 662, 1057, 1346
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	92, 331, 1207
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	1 cut(s)	1291
MaeI	CTAG	4 cut(s)	35, 699, 795, 1356
MaeII	ACGT	2 cut(s)	885, 1292
MaeIII	GTNAC	4 cut(s)	226, 718, 797, 1082
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	7 cut(s)	69, 481, 543, 662, 674, 737, 1153
MfeI	CAATTG	2 cut(s)	269, 1177
MlyI	GAGTC	6 cut(s)	151, 239, 794, 1070, 1229, 1333
MmeI	TCCRAC	1 cut(s)	1245
Mph1103I	ATGCAT	2 cut(s)	6, 1159
MseI	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	1279
MspR9I	CCNGG	1 cut(s)	867
MunI	CAATTG	2 cut(s)	269, 1177
Mva1269I	GAATGC	3 cut(s)	988, 1074, 1157
MvaI	CCWGG	1 cut(s)	867
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	6 cut(s)	22, 434, 605, 662, 1057, 1346
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	797, 1082
NsiI	ATGCAT	2 cut(s)	6, 1159
NspI	RCATGY	2 cut(s)	434, 1057
PagI	TCATGA	1 cut(s)	1342
PciI	ACATGT	1 cut(s)	1053
PctI	GAATGC	3 cut(s)	988, 1074, 1157
PfeI	GAWTC	5 cut(s)	23, 560, 773, 848, 1037
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	6 cut(s)	150, 239, 794, 1069, 1228, 1333
PpsI	GAGTC	6 cut(s)	150, 239, 794, 1069, 1228, 1333
PscI	ACATGT	1 cut(s)	1053
Psp6I	CCWGG	1 cut(s)	865
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	154, 1276
RsaI	GTAC	3 cut(s)	117, 860, 1175
RsaNI	GTAC	3 cut(s)	116, 859, 1174
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	2 cut(s)	154, 1276
SchI	GAGTC	6 cut(s)	151, 239, 794, 1070, 1229, 1333
ScrFI	CCNGG	1 cut(s)	867
SfaNI	GCATC	1 cut(s)	1291
SinI	GGWCC	2 cut(s)	154, 1276
SmiMI	CAYNNNNRTG	1 cut(s)	339
SsiI	CCGC	1 cut(s)	1094
SspMI	CTAG	4 cut(s)	35, 699, 795, 1356
StyD4I	CCNGG	1 cut(s)	865
StyI	CCWWGG	2 cut(s)	18, 157
TaaI	ACNGT	7 cut(s)	120, 151, 172, 460, 673, 929, 1244
TaiI	ACGT	2 cut(s)	888, 1295
TaqI	TCGA	1 cut(s)	916
TatI	WGTACW	1 cut(s)	1173
TfiI	GAWTC	5 cut(s)	23, 560, 773, 848, 1037
Tru1I	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
Tru9I	TTAA	6 cut(s)	137, 294, 501, 632, 1137, 1320
TscAI	CASTG	3 cut(s)	220, 934, 1047
TseFI	GTSAC	2 cut(s)	797, 1082
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	2 cut(s)	797, 1082
TspDTI	ATGAA	2 cut(s)	675, 771
TspGWI	ACGGA	1 cut(s)	1070
TspRI	CASTG	3 cut(s)	220, 934, 1047
VpaK11BI	GGWCC	2 cut(s)	154, 1276
XapI	RAATTY	9 cut(s)	175, 277, 397, 484, 587, 628, 694, 739, 1133
XbaI	TCTAGA	1 cut(s)	1355
XceI	RCATGY	2 cut(s)	434, 1057
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	4 cut(s)	35, 699, 795, 1356
Zsp2I	ATGCAT	2 cut(s)	6, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.