RLG00000006742

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
10133202 .. 10137763
4562 bp
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UTR
Exon/CDS
Intron
RLM00000006742

Sequence Viewer

Length: 1518 bp
ATGGTCTTCGAGAAGGCCCAGTTGGGAAATATTACAGAGGAAGTTGACGATAGAATAAGGTTTTGGGTTGAAGAAGAAAGTGTCCAACTGAAAGATGATAGCCTTGATTCGTATGGGGAAGAAAGTGTTCTAGGGATTGCCCAGTTGGGGAATGTTACAGAGCAAGTTAAAGGTGAAAGCTCAGGGGTTAAAGAAGGAAGCGTTCGACAAAAAGATGGCAACTTTGATTCAAACGGTGAAGGAGGGATTGCCCATTTGGGGAATTCCTCTGAGATTTTGAAATTTGGAAGATTGCATGGTGCAGGTGGGAAAGCAACGGGGAAATCAAGCGTTGCTGGCAAAGAGGAAAGCGTTGAAGTTAGTTTTTCAAACAATTGTAGGAGTGGGAATGGCATGGTCACAGAAGATGTAAAAAATGAAATTATTGGCTTTGATTCTCAAACTTGGGAAATGCAGAGTGATGATGACTCTGATCAGAAATGTGATGTTTATGATGGTAAATGGGTAAGAGATGATTCAATGCCATACTATCCTGGAGGTTCTTGTCCGCACATTGATAGGGATTTTAATTGTCACCTCAATCGAAGGCCGGACGATGAGTTTTTAAAATGGAAATGGCAGCCATATGGGTGCGACATCTCAAGTCTGAATGCAACTGATTTTCTGGAGAGGTTGAGGGGAAAGAGGCTGGTTTTTGTGGGAGATTCACTGAATAGGAACATGTGGGAGTCTCTGGTGTGCATTCTATGCCACGGCGTCCGACACAAGAATAGAGTTTATGAGCTTTCAGGAAAGTCGCAATTTAAGAAGAGGGGCATTTATTCATTCAAGTTTGAGGAATACAATTGTTTTGTGGAATATGTTGGTTCACCATTCCTTGTTAGGCAATCATCATTCGCCGGTAAAGAGACCTTGAGGTTGGATTTGATGGACCAGACCACATTGAAGTATCGTGATGCTGATATTATAGTTTTCAACACTGCCCACTGGTGGAATCACTGGAAAACAGCTAGAGGACTACACTATTACCAAGAAGCCAACTATGTGCACCCAAGGCTAAAGGCTCTTGAAGCATACAAGAGAGCTCTCACCACTTGGGCTAGATGGGTGGACATGAACATCAATCCCAACCGGACTCGGGTTTTCTTCCGAGGATATGCATATTCCCATTACAGTAATGGGCAATGGAACTCAGGAGGACATTGCCACAAAGAAACAGAACCAATCTTTAACGAAGCTCATTTATCGAAGTATCCTTCGAAAATGAGAGCTGTAGAGTCTGTACTTCAAGGAATGAAAACTCCGGTGACGTATCTAAACATAAGTAGACTTACAGATTACAGAAAAGATGCCCACCCTTCCATTTACAGAATGGAATACAAGACAAAAGAAGAAGAAATTGCTGCTAAACGATCTCAGGATTGCAACCATTGGTGCTTGCCGGGGGTTCCGGATACTTGGAACGAATTGTTATATGCTTCGCTTTTGAAGGACGGATGGGAATCAGGGCAAAAATGA

Protein Analysis

506

Amino Acids

58.09

Weight (kDa)

6.18

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 159 - 212 5e-20 PMR5 N terminal Domain
PC-Esterase PF13839 215 - 493 1.7e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 1327
AccIII TCCGGA 1 cut(s) 1450
AciI CCGC 1 cut(s) 548
AcsI RAATTY 2 cut(s) 262, 281
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 1 cut(s) 1284
AfiI CCNNNNNNNGG 4 cut(s) 147, 258, 990, 1138
AflIII ACRYGT 1 cut(s) 720
AjnI CCWGG 1 cut(s) 532
AjuI GAANNNNNNNTTGG 3 cut(s) 37, 46, 78
AluBI AGCT 6 cut(s) 180, 784, 1010, 1085, 1238, 1271
AluI AGCT 6 cut(s) 180, 784, 1010, 1085, 1238, 1271
Alw21I GWGCWC 2 cut(s) 1050, 1087
Alw26I GTCTC 2 cut(s) 735, 902
Alw44I GTGCAC 1 cut(s) 1046
Ama87I CYCGRG 1 cut(s) 1137
Aor13HI TCCGGA 1 cut(s) 1450
AoxI GGCC 2 cut(s) 15, 587
ApaLI GTGCAC 1 cut(s) 1046
ApeKI GCWGC 2 cut(s) 619, 1403
ApoI RAATTY 2 cut(s) 262, 281
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 16, 931
AsuC2I CCSGG 1 cut(s) 1443
AsuHPI GGTGA 6 cut(s) 185, 248, 566, 861, 1081, 1318
AsuII TTCGAA 1 cut(s) 1259
AvaI CYCGRG 1 cut(s) 1137
AvaII GGWCC 1 cut(s) 931
BaeGI GKGCMC 1 cut(s) 1050
BanII GRGCYC 1 cut(s) 1087
Bbv12I GWGCWC 2 cut(s) 1050, 1087
BbvI GCAGC 2 cut(s) 631, 1390
BccI CCATC 5 cut(s) 209, 488, 922, 1098, 1491
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 2 cut(s) 1263, 1447
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 1443
BcoDI GTCTC 2 cut(s) 735, 902
BfaI CTAG 3 cut(s) 131, 1011, 1101
BfmI CTRYAG 1 cut(s) 1272
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 2 cut(s) 1263, 1447
BisI GCNGC 2 cut(s) 620, 1404
BlsI GCNGC 2 cut(s) 621, 1405
Bme1390I CCNGG 2 cut(s) 534, 1443
Bme18I GGWCC 1 cut(s) 931
BmeT110I CYCGRG 1 cut(s) 1137
BmgT120I GGNCC 2 cut(s) 16, 931
BmiI GGNNCC 1 cut(s) 1449
BmrFI CCNGG 2 cut(s) 534, 1443
BmrI ACTGGG 2 cut(s) 13, 136
BmsI GCATC 2 cut(s) 946, 1339
BmuI ACTGGG 2 cut(s) 13, 136
BpmI CTGGAG 2 cut(s) 555, 686
Bpu10I CCTNAGC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 1259
BpuEI CTTGAG 2 cut(s) 625, 934
BpuMI CCSGG 1 cut(s) 1443
BsaBI GATNNNNATC 1 cut(s) 1501
BsaHI GRCGYC 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 4 cut(s) 751, 1052, 1150, 1442
BsaWI WCCGGW 3 cut(s) 1131, 1303, 1450
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 258, 990, 1138
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 4 cut(s) 19, 142, 992, 1004
Bse3DI GCAATG 2 cut(s) 1190, 1201
Bse8I GATNNNNATC 1 cut(s) 1501
BseAI TCCGGA 1 cut(s) 1450
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 4 cut(s) 751, 1052, 1150, 1442
BseGI GGATG 1 cut(s) 1502
BseJI GATNNNNATC 1 cut(s) 1501
BseLI CCNNNNNNNGG 4 cut(s) 147, 258, 990, 1138
BseMI GCAATG 2 cut(s) 1190, 1201
BseMII CTCAG 4 cut(s) 195, 261, 1206, 1430
BseNI ACTGG 4 cut(s) 19, 142, 992, 1004
BseSI GKGCMC 1 cut(s) 1050
BseXI GCAGC 2 cut(s) 631, 1390
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 2 cut(s) 17, 589
BsiHKAI GWGCWC 2 cut(s) 1050, 1087
BsiHKCI CYCGRG 1 cut(s) 1137
BsiSI CCGG 6 cut(s) 590, 900, 1132, 1304, 1442, 1451
BslI CCNNNNNNNGG 4 cut(s) 147, 258, 990, 1138
BsmAI GTCTC 2 cut(s) 735, 902
BsmI GAATGC 2 cut(s) 655, 741
BsnI GGCC 2 cut(s) 17, 589
Bso31I GGTCTC 1 cut(s) 902
BsoBI CYCGRG 1 cut(s) 1137
Bsp119I TTCGAA 1 cut(s) 1259
Bsp1286I GDGCHC 2 cut(s) 1050, 1087
Bsp13I TCCGGA 1 cut(s) 1450
Bsp143I GATC 2 cut(s) 472, 1412
BspACI CCGC 1 cut(s) 548
BspANI GGCC 2 cut(s) 17, 589
BspCNI CTCAG 4 cut(s) 194, 262, 1205, 1429
BspEI TCCGGA 1 cut(s) 1450
BspLI GGNNCC 1 cut(s) 1449
BspMI ACCTGC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 1259
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 2 cut(s) 1190, 1201
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 4 cut(s) 19, 142, 992, 1004
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 4 cut(s) 751, 1052, 1150, 1442
BssMI GATC 2 cut(s) 472, 1412
BssNI GRCGYC 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 1052
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 236, 1175
Bst6I CTCTTC 1 cut(s) 803
BstACI GRCGYC 1 cut(s) 756
BstAPI GCANNNNNTGC 1 cut(s) 747
BstBI TTCGAA 1 cut(s) 1259
BstC8I GCNNGC 2 cut(s) 337, 1439
BstDEI CTNAG 4 cut(s) 181, 270, 1192, 1416
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 1 cut(s) 1502
BstKTI GATC 2 cut(s) 475, 1415
BstMAI GTCTC 2 cut(s) 735, 902
BstMBI GATC 2 cut(s) 472, 1412
BstMWI GCNNNNNNNGC 4 cut(s) 336, 747, 1054, 1070
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 532, 1441
BstSFI CTRYAG 1 cut(s) 1272
BstSLI GKGCMC 1 cut(s) 1050
BstV1I GCAGC 2 cut(s) 631, 1390
BsuI GTATCC 2 cut(s) 1263, 1447
BsuRI GGCC 2 cut(s) 17, 589
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 1 cut(s) 1502
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 4 cut(s) 707, 978, 985, 997
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 337, 1439
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 2 cut(s) 16, 931
CseI GACGC 1 cut(s) 745
Csp6I GTAC 1 cut(s) 1283
CviAII CATG 4 cut(s) 296, 394, 721, 1114
CviQI GTAC 1 cut(s) 1283
DdeI CTNAG 4 cut(s) 181, 270, 1192, 1416
DpnI GATC 2 cut(s) 474, 1414
DpnII GATC 2 cut(s) 472, 1412
DraI TTTAAA 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Ecl136II GAGCTC 1 cut(s) 1085
Eco130I CCWWGG 1 cut(s) 1052
Eco24I GRGCYC 1 cut(s) 1087
Eco31I GGTCTC 1 cut(s) 902
Eco47I GGWCC 1 cut(s) 931
Eco53kI GAGCTC 1 cut(s) 1085
Eco88I CYCGRG 1 cut(s) 1137
EcoICRI GAGCTC 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 1052
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 1087
ErhI CCWWGG 1 cut(s) 1052
FaeI CATG 4 cut(s) 299, 397, 724, 1117
FatI CATG 4 cut(s) 295, 393, 720, 1113
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 1327
Fnu4HI GCNGC 2 cut(s) 620, 1404
FokI GGATG 1 cut(s) 1509
FriOI GRGCYC 1 cut(s) 1087
Fsp4HI GCNGC 2 cut(s) 620, 1404
FspBI CTAG 3 cut(s) 131, 1011, 1101
GluI GCNGC 2 cut(s) 620, 1404
GsuI CTGGAG 2 cut(s) 555, 686
HaeIII GGCC 2 cut(s) 17, 589
HapII CCGG 6 cut(s) 590, 900, 1132, 1304, 1442, 1451
HgaI GACGC 1 cut(s) 745
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 4 cut(s) 299, 397, 724, 1117
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HpaII CCGG 6 cut(s) 590, 900, 1132, 1304, 1442, 1451
HphI GGTGA 6 cut(s) 185, 248, 566, 861, 1081, 1318
Hpy166II GTNNAC 5 cut(s) 46, 869, 1048, 1111, 1328
Hpy188I TCNGA 6 cut(s) 271, 472, 477, 648, 761, 1151
Hpy188III TCNNGA 8 cut(s) 10, 665, 789, 953, 1067, 1194, 1418, 1451
Hpy8I GTNNAC 5 cut(s) 46, 869, 1048, 1111, 1328
HpyAV CCTTC 7 cut(s) 7, 188, 233, 579, 1266, 1368, 1483
HpyCH4III ACNGT 2 cut(s) 236, 1175
HpyCH4IV ACGT 1 cut(s) 1310
HpyCH4V TGCA 8 cut(s) 295, 302, 454, 653, 741, 1048, 1160, 1425
HpyF10VI GCNNNNNNNGC 4 cut(s) 336, 747, 1054, 1070
HpyF3I CTNAG 4 cut(s) 181, 270, 1192, 1416
HpySE526I ACGT 1 cut(s) 1310
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 4 cut(s) 299, 397, 724, 1117
Kpn2I TCCGGA 1 cut(s) 1450
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 2 cut(s) 472, 1412
Lsp1109I GCAGC 2 cut(s) 631, 1390
LweI GCATC 2 cut(s) 946, 1339
MaeI CTAG 3 cut(s) 131, 1011, 1101
MaeII ACGT 1 cut(s) 1310
MaeIII GTNAC 4 cut(s) 154, 397, 572, 1306
MalI GATC 2 cut(s) 474, 1414
MboI GATC 2 cut(s) 472, 1412
MboII GAAGA 9 cut(s) 83, 86, 131, 300, 416, 820, 1138, 1403, 1406
MfeI CAATTG 2 cut(s) 373, 844
MhlI GDGCHC 2 cut(s) 1050, 1087
MluCI AATT 9 cut(s) 262, 281, 373, 420, 568, 800, 844, 1398, 1466
MlyI GAGTC 4 cut(s) 461, 737, 1129, 1286
MmeI TCCRAC 3 cut(s) 109, 784, 900
Mph1103I ATGCAT 1 cut(s) 1162
MroI TCCGGA 1 cut(s) 1450
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 6 cut(s) 168, 189, 567, 605, 804, 1230
MslI CAYNNNNRTG 1 cut(s) 628
MspI CCGG 6 cut(s) 590, 900, 1132, 1304, 1442, 1451
MspR9I CCNGG 2 cut(s) 534, 1443
MunI CAATTG 2 cut(s) 373, 844
Mva1269I GAATGC 2 cut(s) 655, 741
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 336, 747, 1054, 1070
NciI CCSGG 1 cut(s) 1443
NdeI CATATG 1 cut(s) 625
NdeII GATC 2 cut(s) 472, 1412
NlaIII CATG 4 cut(s) 299, 397, 724, 1117
NlaIV GGNNCC 1 cut(s) 1449
NmuCI GTSAC 3 cut(s) 397, 572, 1306
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 1 cut(s) 1259
PaqCI CACCTGC 1 cut(s) 293
PciI ACATGT 1 cut(s) 720
PctI GAATGC 2 cut(s) 655, 741
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 7 cut(s) 107, 227, 434, 515, 704, 994, 1502
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 2 cut(s) 621, 1405
PleI GAGTC 4 cut(s) 461, 736, 1129, 1285
PpsI GAGTC 4 cut(s) 461, 736, 1129, 1285
PscI ACATGT 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 1087
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 1449
PspPI GGNCC 2 cut(s) 16, 931
RsaI GTAC 1 cut(s) 1284
RsaNI GTAC 1 cut(s) 1283
RseI CAYNNNNRTG 1 cut(s) 628
SacI GAGCTC 1 cut(s) 1087
SaqAI TTAA 6 cut(s) 168, 189, 567, 605, 804, 1230
SatI GCNGC 2 cut(s) 620, 1404
Sau3AI GATC 2 cut(s) 472, 1412
Sau96I GGNCC 2 cut(s) 16, 931
SchI GAGTC 4 cut(s) 461, 737, 1129, 1286
ScrFI CCNGG 2 cut(s) 534, 1443
SduI GDGCHC 2 cut(s) 1050, 1087
SfaNI GCATC 2 cut(s) 946, 1339
SfcI CTRYAG 1 cut(s) 1272
SfuI TTCGAA 1 cut(s) 1259
SinI GGWCC 1 cut(s) 931
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 640, 913
SmoI CTYRAG 2 cut(s) 640, 913
Sse9I AATT 9 cut(s) 262, 281, 373, 420, 568, 800, 844, 1398, 1466
SsiI CCGC 1 cut(s) 548
SspI AATATT 1 cut(s) 31
SspMI CTAG 3 cut(s) 131, 1011, 1101
SstI GAGCTC 1 cut(s) 1087
StyD4I CCNGG 2 cut(s) 532, 1441
StyI CCWWGG 1 cut(s) 1052
TaaI ACNGT 2 cut(s) 236, 1175
TaiI ACGT 1 cut(s) 1313
TaqI TCGA 5 cut(s) 9, 205, 583, 1247, 1259
TasI AATT 9 cut(s) 262, 281, 373, 420, 568, 800, 844, 1398, 1466
TatI WGTACW 1 cut(s) 1282
TfiI GAWTC 7 cut(s) 107, 227, 434, 515, 704, 994, 1502
Tru1I TTAA 6 cut(s) 168, 189, 567, 605, 804, 1230
Tru9I TTAA 6 cut(s) 168, 189, 567, 605, 804, 1230
TscAI CASTG 4 cut(s) 714, 985, 992, 1004
TseFI GTSAC 3 cut(s) 397, 572, 1306
TseI GCWGC 2 cut(s) 619, 1403
Tsp45I GTSAC 3 cut(s) 397, 572, 1306
TspDTI ATGAA 4 cut(s) 432, 813, 1130, 1310
TspGWI ACGGA 1 cut(s) 1509
TspRI CASTG 4 cut(s) 714, 985, 992, 1004
VneI GTGCAC 1 cut(s) 1046
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 2 cut(s) 262, 281
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 2 cut(s) 1175, 1369
XmiI GTMKAC 1 cut(s) 1327
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 131, 1011, 1101
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.