Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Forward (+)

60800916 .. 60803182

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCAAGACTCTGTGGACTTGAACAAGACCCAATTGGGGAATTTCACAGAGGAAGTTAAAGATGGAAGCTCTGGGGTTGAAGGAGGAAGGGTGGAGCATAAAGATGGTGGAGGTGGGAAAGAGACAGTTTTGGAGAAGACCCAGATGGGGAATTTTACAGAGGCAGTTAAAGATGGAAGCTTTGTGGTTGAGGAAGGAAGAGTTCAACAGAAAGATAATAACTCAGATTCAAGAAATTCCTCGGAGATTTTGAAATTTGAGAGCTTGCATGGTGAAGGTGGGAAGGGAATTGGGAATTTAAGCCTTTCTAAGAAAGAAGATGTGCATGAAGAGAAAACAGTTGAAGGTAGTTTTTCAAAGAATTCTAGTAATGGGGATGGTAAGGTAACAGAAGATCATCAAGGAAATTCAACACAGAAAAATGAAATCATTGAGCTTGATTCTCAAACTTGGGAAATGCCTAGTGACTCTGATAAAAAATGTGATATTTTTGATGGTAAATGGGTGAGAGATGATTCAAAGCCGTACTATCCTGGAGGTTCTTGTCCACACGTTGATAAGGTTTGGAATTGCCACTCCAATCGAAGGCCAGACAGTGCTTTCCTAAAATGGAAATGGCAGCCAAATGGGTGTGATATCCCGAGTTTGAATGCAACTGATTTTCTGGAGAGGTTGAGAGGAAAGAGGTTGGTTTTTGTGGGGGATTCACTGAATAGGAACATGTGGGAGTCTCTTGTGTGCATTCTCCGTCACAGCGTTCCGCACAAGAAAAAGGTATATGAGATTTCGGGAAAGAAGGAATTTAAGAAGAAGGGGATATATGCATTCAGATTTGAGGAGTACAATTGTTCTCTGGATTTTGTGGTTGCTCCATTCCTTGTTAGGGAGTCAACATTCACAGGCAAAAACAGTTCGTTTGAGACATTGAGGTTGGATTTGATGGACCGGACTACAACAACGTATCGTGATGCTGATGTTATAGTTTTTAATACTGGTCATTGGTGGACTCATGAGAAAACTTCTAGAGGAGAAGACTACTACCAAGAAGGCAACTATGTGCATCCAAGGCTCAAGGCTCTTGAAGCATACAAGAGAGCTCTCACCACTTGGGCGAGATGGGTGGACAGATACATCAATGCCAACAGGACTCGCGTTTTCTTCAGAGGATATTCAGTCACCCATTTCAGTGGAGGGCAATGGAACTCAGGTGGACAGTGCCACAAAGAAACAGAACCAATCTTTAATGAGACTTATCTAACGCATTACCCTTCGAAAATGAGAGCTCTAGAGAGTGTACTTAAAGAAATGAAAACTCCAGTGACATATCTTAACATTAGTAGGCTTACGGATTATAGAAAAGACAGACACCCTTCCATTTACAGAACGATATACAAGACAAAGGAAGAACAAATTGCAGCTGAACAATCTCAGGATTGCAGTCATTGGTGCTTGCCTGGGGTTCCGGATACTTGGAATGAATTGTTATACGCTTTGCTGCTGCAGACCGGATGGGGATCAGGGCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

509

Amino Acids

58.39

Weight (kDa)

6.78

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	159 - 212	6.1e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	213 - 497	1.4e-100	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1152
AccIII	TCCGGA	1 cut(s)	1462
AciI	CCGC	1 cut(s)	761
AclWI	GGATC	1 cut(s)	1522
AcsI	RAATTY	8 cut(s)	40, 151, 235, 254, 295, 361, 406, 800
AcuI	CTGAAG	1 cut(s)	1144
AfaI	GTAC	3 cut(s)	527, 842, 1296
AfiI	CCNNNNNNNGG	4 cut(s)	36, 147, 585, 883
AflIII	ACRYGT	2 cut(s)	550, 720
AjnI	CCWGG	2 cut(s)	532, 1453
AluBI	AGCT	7 cut(s)	69, 180, 264, 436, 1097, 1283, 1418
AluI	AGCT	7 cut(s)	69, 180, 264, 436, 1097, 1283, 1418
Alw21I	GWGCWC	2 cut(s)	1099, 1285
Alw26I	GTCTC	4 cut(s)	116, 735, 914, 1241
AlwI	GGATC	1 cut(s)	1522
Ama87I	CYCGRG	1 cut(s)	640
Aor13HI	TCCGGA	1 cut(s)	1462
AoxI	GGCC	1 cut(s)	587
ApeKI	GCWGC	4 cut(s)	619, 1415, 1495, 1498
ApoI	RAATTY	8 cut(s)	40, 151, 235, 254, 295, 361, 406, 800
AspS9I	GGNCC	1 cut(s)	943
AsuHPI	GGTGA	4 cut(s)	284, 517, 1093, 1168
AsuII	TTCGAA	1 cut(s)	1271
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	943
BanII	GRGCYC	2 cut(s)	1099, 1285
BbsI	GAAGAC	2 cut(s)	143, 1038
Bbv12I	GWGCWC	2 cut(s)	1099, 1285
BbvI	GCAGC	4 cut(s)	631, 1427, 1482, 1485
BccI	CCATC	9 cut(s)	56, 98, 139, 167, 371, 488, 934, 1110, 1503
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	534, 1455
BciVI	GTATCC	1 cut(s)	1459
BcoDI	GTCTC	4 cut(s)	116, 735, 914, 1241
BfaI	CTAG	4 cut(s)	366, 462, 1023, 1286
BfmI	CTRYAG	1 cut(s)	1499
BfuI	GTATCC	1 cut(s)	1459
BisI	GCNGC	4 cut(s)	620, 1416, 1496, 1499
BlsI	GCNGC	4 cut(s)	621, 1417, 1497, 1500
Bme1390I	CCNGG	2 cut(s)	534, 1455
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	1 cut(s)	1461
BmrFI	CCNGG	2 cut(s)	534, 1455
BmsI	GCATC	2 cut(s)	958, 1069
BpiI	GAAGAC	2 cut(s)	143, 1038
BpmI	CTGGAG	3 cut(s)	555, 686, 1299
Bpu14I	TTCGAA	1 cut(s)	1271
BpuEI	CTTGAG	1 cut(s)	1055
BsaBI	GATNNNNATC	1 cut(s)	1513
BsaJI	CCNNGG	3 cut(s)	240, 1064, 1454
BsaWI	WCCGGW	3 cut(s)	945, 1462, 1505
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 147, 585, 883
Bse1I	ACTGG	2 cut(s)	997, 1316
Bse3DI	GCAATG	1 cut(s)	1202
Bse8I	GATNNNNATC	1 cut(s)	1513
BseAI	TCCGGA	1 cut(s)	1462
BseBI	CCWGG	2 cut(s)	534, 1455
BseDI	CCNNGG	3 cut(s)	240, 1064, 1454
BseGI	GGATG	3 cut(s)	382, 1060, 1514
BseJI	GATNNNNATC	1 cut(s)	1513
BseLI	CCNNNNNNNGG	4 cut(s)	36, 147, 585, 883
BseMI	GCAATG	1 cut(s)	1202
BseMII	CTCAG	3 cut(s)	237, 1218, 1442
BseNI	ACTGG	2 cut(s)	997, 1316
BseRI	GAGGAG	2 cut(s)	851, 1041
BseXI	GCAGC	4 cut(s)	631, 1427, 1482, 1485
Bsh1236I	CGCG	1 cut(s)	1152
BshFI	GGCC	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	1099, 1285
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	3 cut(s)	946, 1463, 1506
BslI	CCNNNNNNNGG	4 cut(s)	36, 147, 585, 883
BsmAI	GTCTC	4 cut(s)	116, 735, 914, 1241
BsmI	GAATGC	3 cut(s)	655, 741, 824
BsnI	GGCC	1 cut(s)	589
BsoBI	CYCGRG	1 cut(s)	640
Bsp119I	TTCGAA	1 cut(s)	1271
Bsp1286I	GDGCHC	2 cut(s)	1099, 1285
Bsp13I	TCCGGA	1 cut(s)	1462
Bsp143I	GATC	2 cut(s)	394, 1514
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	3 cut(s)	236, 1217, 1441
BspEI	TCCGGA	1 cut(s)	1462
BspFNI	CGCG	1 cut(s)	1152
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	1 cut(s)	1461
BspMAI	CTGCAG	1 cut(s)	1503
BspPI	GGATC	1 cut(s)	1522
BspT104I	TTCGAA	1 cut(s)	1271
BsrDI	GCAATG	1 cut(s)	1202
BsrI	ACTGG	2 cut(s)	997, 1316
BssECI	CCNNGG	3 cut(s)	240, 1064, 1454
BssMI	GATC	2 cut(s)	394, 1514
BssT1I	CCWWGG	1 cut(s)	1064
Bst2UI	CCWGG	2 cut(s)	534, 1455
Bst4CI	ACNGT	5 cut(s)	127, 340, 596, 911, 1215
Bst6I	CTCTTC	2 cut(s)	193, 324
BstBI	TTCGAA	1 cut(s)	1271
BstC8I	GCNNGC	2 cut(s)	266, 1451
BstDEI	CTNAG	4 cut(s)	223, 309, 1204, 1428
BstF5I	GGATG	3 cut(s)	382, 1060, 1514
BstFNI	CGCG	1 cut(s)	1152
BstKTI	GATC	2 cut(s)	397, 1517
BstMAI	GTCTC	4 cut(s)	116, 735, 914, 1241
BstMBI	GATC	2 cut(s)	394, 1514
BstMWI	GCNNNNNNNGC	2 cut(s)	1066, 1082
BstNI	CCWGG	2 cut(s)	534, 1455
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	532, 1453
BstSFI	CTRYAG	1 cut(s)	1499
BstUI	CGCG	1 cut(s)	1152
BstV1I	GCAGC	4 cut(s)	631, 1427, 1482, 1485
BstV2I	GAAGAC	2 cut(s)	143, 1038
BstXI	CCANNNNNNTGG	1 cut(s)	1187
BsuI	GTATCC	1 cut(s)	1459
BsuRI	GGCC	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	382, 1060, 1514
BtsIMutI	CAGTG	5 cut(s)	601, 707, 1192, 1220, 1323
Cac8I	GCNNGC	2 cut(s)	266, 1451
CciI	TCATGA	1 cut(s)	1009
Cfr13I	GGNCC	1 cut(s)	943
Csp6I	GTAC	3 cut(s)	526, 841, 1295
CviAII	CATG	4 cut(s)	269, 326, 721, 1010
CviQI	GTAC	3 cut(s)	526, 841, 1295
DdeI	CTNAG	4 cut(s)	223, 309, 1204, 1428
DpnI	GATC	2 cut(s)	396, 1516
DpnII	GATC	2 cut(s)	394, 1514
Eam1104I	CTCTTC	2 cut(s)	193, 324
EarI	CTCTTC	2 cut(s)	193, 324
Ecl136II	GAGCTC	2 cut(s)	1097, 1283
Eco130I	CCWWGG	1 cut(s)	1064
Eco24I	GRGCYC	2 cut(s)	1099, 1285
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	943
Eco53kI	GAGCTC	2 cut(s)	1097, 1283
Eco57I	CTGAAG	1 cut(s)	1144
Eco88I	CYCGRG	1 cut(s)	640
EcoICRI	GAGCTC	2 cut(s)	1097, 1283
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	532, 1453
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	1064
EcoT22I	ATGCAT	1 cut(s)	826
EcoT38I	GRGCYC	2 cut(s)	1099, 1285
ErhI	CCWWGG	1 cut(s)	1064
FaeI	CATG	4 cut(s)	272, 329, 724, 1013
FatI	CATG	4 cut(s)	268, 325, 720, 1009
Fnu4HI	GCNGC	4 cut(s)	620, 1416, 1496, 1499
FokI	GGATG	3 cut(s)	389, 1047, 1521
FriOI	GRGCYC	2 cut(s)	1099, 1285
Fsp4HI	GCNGC	4 cut(s)	620, 1416, 1496, 1499
FspBI	CTAG	4 cut(s)	366, 462, 1023, 1286
GluI	GCNGC	4 cut(s)	620, 1416, 1496, 1499
GsuI	CTGGAG	3 cut(s)	555, 686, 1299
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	3 cut(s)	946, 1463, 1506
Hin1II	CATG	4 cut(s)	272, 329, 724, 1013
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	178
HpaII	CCGG	3 cut(s)	946, 1463, 1506
HphI	GGTGA	4 cut(s)	284, 517, 1093, 1168
Hpy166II	GTNNAC	7 cut(s)	16, 548, 891, 1005, 1123, 1211, 1295
Hpy188I	TCNGA	5 cut(s)	226, 244, 472, 830, 1163
Hpy8I	GTNNAC	7 cut(s)	16, 548, 891, 1005, 1123, 1211, 1295
HpyCH4III	ACNGT	5 cut(s)	127, 340, 596, 911, 1215
HpyCH4IV	ACGT	2 cut(s)	552, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1066, 1082
HpyF3I	CTNAG	4 cut(s)	223, 309, 1204, 1428
HpySE526I	ACGT	2 cut(s)	552, 959
Hsp92II	CATG	4 cut(s)	272, 329, 724, 1013
Kpn2I	TCCGGA	1 cut(s)	1462
Kzo9I	GATC	2 cut(s)	394, 1514
LmnI	GCTCC	2 cut(s)	94, 874
Lsp1109I	GCAGC	4 cut(s)	631, 1427, 1482, 1485
LweI	GCATC	2 cut(s)	958, 1069
MaeI	CTAG	4 cut(s)	366, 462, 1023, 1286
MaeII	ACGT	2 cut(s)	552, 959
MaeIII	GTNAC	5 cut(s)	385, 464, 749, 1174, 1318
MalI	GATC	2 cut(s)	396, 1516
MboI	GATC	2 cut(s)	394, 1514
MboII	GAAGA	9 cut(s)	148, 210, 329, 341, 404, 820, 1043, 1150, 1415
MfeI	CAATTG	2 cut(s)	32, 844
MhlI	GDGCHC	2 cut(s)	1099, 1285
MlyI	GAGTC	6 cut(s)	2, 461, 737, 896, 1000, 1141
MmeI	TCCRAC	1 cut(s)	912
Mph1103I	ATGCAT	1 cut(s)	826
MroI	TCCGGA	1 cut(s)	1462
MseI	TTAA	8 cut(s)	57, 168, 299, 804, 987, 1242, 1299, 1329
MslI	CAYNNNNRTG	2 cut(s)	102, 1185
MspA1I	CMGCKG	1 cut(s)	1418
MspI	CCGG	3 cut(s)	946, 1463, 1506
MspR9I	CCNGG	2 cut(s)	534, 1455
MunI	CAATTG	2 cut(s)	32, 844
Mva1269I	GAATGC	3 cut(s)	655, 741, 824
MvaI	CCWGG	2 cut(s)	534, 1455
MvnI	CGCG	1 cut(s)	1152
MwoI	GCNNNNNNNGC	2 cut(s)	1066, 1082
NdeII	GATC	2 cut(s)	394, 1514
NlaIII	CATG	4 cut(s)	272, 329, 724, 1013
NlaIV	GGNNCC	1 cut(s)	1461
NmuCI	GTSAC	4 cut(s)	464, 749, 1174, 1318
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	1271
PagI	TCATGA	1 cut(s)	1009
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	3 cut(s)	655, 741, 824
PfeI	GAWTC	4 cut(s)	227, 440, 515, 704
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	621, 1417, 1497, 1500
PleI	GAGTC	6 cut(s)	2, 461, 736, 895, 1000, 1141
PpsI	GAGTC	6 cut(s)	2, 461, 736, 895, 1000, 1141
PscI	ACATGT	1 cut(s)	720
Psp124BI	GAGCTC	2 cut(s)	1099, 1285
Psp6I	CCWGG	2 cut(s)	532, 1453
PspGI	CCWGG	2 cut(s)	532, 1453
PspN4I	GGNNCC	1 cut(s)	1461
PspPI	GGNCC	1 cut(s)	943
PstI	CTGCAG	1 cut(s)	1503
PvuII	CAGCTG	1 cut(s)	1418
RsaI	GTAC	3 cut(s)	527, 842, 1296
RsaNI	GTAC	3 cut(s)	526, 841, 1295
RseI	CAYNNNNRTG	2 cut(s)	102, 1185
SacI	GAGCTC	2 cut(s)	1099, 1285
SaqAI	TTAA	8 cut(s)	57, 168, 299, 804, 987, 1242, 1299, 1329
SatI	GCNGC	4 cut(s)	620, 1416, 1496, 1499
Sau3AI	GATC	2 cut(s)	394, 1514
Sau96I	GGNCC	1 cut(s)	943
SchI	GAGTC	6 cut(s)	2, 461, 737, 896, 1000, 1141
ScrFI	CCNGG	2 cut(s)	534, 1455
SduI	GDGCHC	2 cut(s)	1099, 1285
SfaNI	GCATC	2 cut(s)	958, 1069
SfcI	CTRYAG	1 cut(s)	1499
SfuI	TTCGAA	1 cut(s)	1271
SinI	GGWCC	1 cut(s)	943
SmiMI	CAYNNNNRTG	2 cut(s)	102, 1185
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
SsiI	CCGC	1 cut(s)	761
SspMI	CTAG	4 cut(s)	366, 462, 1023, 1286
SstI	GAGCTC	2 cut(s)	1099, 1285
StyD4I	CCNGG	2 cut(s)	532, 1453
StyI	CCWWGG	1 cut(s)	1064
TaaI	ACNGT	5 cut(s)	127, 340, 596, 911, 1215
TaiI	ACGT	2 cut(s)	555, 962
TaqI	TCGA	2 cut(s)	583, 1271
TatI	WGTACW	2 cut(s)	840, 1294
TfiI	GAWTC	4 cut(s)	227, 440, 515, 704
Tru1I	TTAA	8 cut(s)	57, 168, 299, 804, 987, 1242, 1299, 1329
Tru9I	TTAA	8 cut(s)	57, 168, 299, 804, 987, 1242, 1299, 1329
TscAI	CASTG	5 cut(s)	601, 714, 1192, 1220, 1323
TseFI	GTSAC	4 cut(s)	464, 749, 1174, 1318
TseI	GCWGC	4 cut(s)	619, 1415, 1495, 1498
Tsp45I	GTSAC	4 cut(s)	464, 749, 1174, 1318
TspDTI	ATGAA	4 cut(s)	342, 438, 1322, 1491
TspGWI	ACGGA	2 cut(s)	737, 1361
TspRI	CASTG	5 cut(s)	601, 714, 1192, 1220, 1323
VpaK11BI	GGWCC	1 cut(s)	943
XapI	RAATTY	8 cut(s)	40, 151, 235, 254, 295, 361, 406, 800
XbaI	TCTAGA	2 cut(s)	1022, 1285
XceI	RCATGY	1 cut(s)	724
XspI	CTAG	4 cut(s)	366, 462, 1023, 1286
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.