Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003624

Physical Location & Seq

Genomic Coordinates Forward (+)

51166137 .. 51167048

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0338000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGCTTTCATTTTGTTTCTCGCATCCAATCCAACAGTACCTTCACAATTCTCAATCCTCAATCATTCCCTTTTATCCAAATCCTCTACACCCTCTGTGAATTGAGCTCTACTCTGCTCACATTTACCAACCATGACTTCGTGATTATATGGGTTTTAGGGATGTGGCATCAGAGTGGAAGGGCTTTACCCAAATTTGGCGAGTGGGATGTGAATGATCCAGCCTCAGCTGAAGGATTTACTATCATTTTCAACAAGGCCAGAGCTGACAAGAAAAATGGTGGAAGTTTACTTACTGCTGTGGAATCATCAAGCAACTGTGAATCCCGTAAAGAAAATAATACGCAGAAGTATCCCAAAAGGCTACTGGATCAATTTAAACTGAAAATCTACATTTTGGATGCAGAACAAGTGGCTTTGCATGGGTTGTTAATTAAGCCCCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

149

Amino Acids

16.94

Weight (kDa)

7.8

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	60 - 92	5.2e-18	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60790
fragaria_vesca	FvH4_4g33000 FvH4_4g33000
malus_domestica	MD13G1095600.v1.1 MD16G1097100.v1.1
prunus_persica	Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1 Prupe.1G249700_v2.0.a1
pyrus_communis	pycom13g08330
rosa_chinensis	RchiOBHm_Chr4g0433581 RchiOBHm_Chr4g0433591 RchiOBHm_Chr4g0442021
rosa_laevigata	RLG00000006050 RLG00000006742
rosa_multiflora	Rmu_co8339215.1_g000001 Rmu_sc0000312.1_g000016 Rmu_sc0002501.1_g000017 Rmu_sc0008304.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375070 Rroxscaffold_5G00382910
rosa_rugosa	Rorug04G0269800 Rorug04G0338000
rosa_samantha	Rh4AG324800 Rh4AG389800 Rh4BG332500 Rh4BG403200 Rh4CG347800 Rh4CG418300 Rh4DG329000 Rh4DG396400
rosa_wichuraiana	Rw4G028110 Rw4G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	212, 378
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 122, 154
AluBI	AGCT	3 cut(s)	108, 230, 266
AluI	AGCT	3 cut(s)	108, 230, 266
Alw21I	GWGCWC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	212, 378
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	277, 309
Bbv12I	GWGCWC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	363
BmsI	GCATC	3 cut(s)	33, 178, 391
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
Bpu10I	CCTNAGC	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	372
BseGI	GGATG	4 cut(s)	24, 168, 214, 406
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	217, 370
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	239
BspPI	GGATC	2 cut(s)	212, 378
BsrI	ACTGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	217, 370
Bst4CI	ACNGT	2 cut(s)	38, 320
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	4 cut(s)	24, 168, 214, 406
BstKTI	GATC	2 cut(s)	220, 373
BstMBI	GATC	2 cut(s)	217, 370
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	24, 168, 214, 406
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	134, 422
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	2 cut(s)	219, 372
DpnII	GATC	2 cut(s)	217, 370
DraI	TTTAAA	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	110
FaeI	CATG	2 cut(s)	137, 425
FaiI	YATR	4 cut(s)	135, 149, 151, 423
FatI	CATG	2 cut(s)	133, 421
FokI	GGATG	4 cut(s)	11, 175, 221, 413
FriOI	GRGCYC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	137, 425
HinfI	GANTC	2 cut(s)	305, 323
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	52, 174, 227
HpyCH4III	ACNGT	2 cut(s)	38, 320
HpyCH4V	TGCA	2 cut(s)	404, 421
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	137, 425
Kzo9I	GATC	2 cut(s)	217, 370
LpnPI	CCDG	3 cut(s)	234, 274, 353
LweI	GCATC	3 cut(s)	33, 178, 391
MalI	GATC	2 cut(s)	219, 372
MboI	GATC	2 cut(s)	217, 370
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	5 cut(s)	48, 101, 194, 374, 432
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	69, 95, 104, 235
MseI	TTAA	3 cut(s)	378, 431, 435
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	230
NdeII	GATC	2 cut(s)	217, 370
NlaIII	CATG	2 cut(s)	137, 425
PacI	TTAATTAA	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	305, 323
Psp124BI	GAGCTC	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	378, 431, 435
Sau3AI	GATC	2 cut(s)	217, 370
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	4 cut(s)	44, 110, 232, 268
SfaNI	GCATC	3 cut(s)	33, 178, 391
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	5 cut(s)	48, 101, 194, 374, 432
SstI	GAGCTC	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	38, 320
TasI	AATT	5 cut(s)	48, 101, 194, 374, 432
TfiI	GAWTC	2 cut(s)	305, 323
Tru1I	TTAA	3 cut(s)	378, 431, 435
Tru9I	TTAA	3 cut(s)	378, 431, 435
XapI	RAATTY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.