Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Forward (+)

33573474 .. 33574812

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTTAGAATAGGTACGGAAACACTGCCGAGGCCGAGATTGGCCCCCCGGGAGAGGGAGAAATCGGACGAGGGTGAAGCGAAACTGTACGTTTGTACTTACGAGTACCATTTTGTTTATGTCAAAGAATTCAATCGATACCGTGTCCACGCCATCAAATTGAGCGAACTGTTCTCTTTTGACCTTACCCCGATTCCCATGTTTTCTTCTCAATCCGATTCCAAGCTAAAACAAGTTTCTTCTCAATCCAATTCCGACCTACAACAAGTTGCTGTTCTAGAGGGAAAAGCCGTTCCCATCAATATGGGTATTGGTGTCTTTGGCTCTCGAATCATTCTGGCCGGCGGCTGCTATAAAGTCCCCCTGCACGAACCTATGTTTTGGAGACTGATCAAAGTGTGGAACCCAACCCCAGGTTCATCAGCTGCAGATGTATTCCAGGATTGCCAGGAGGACAGAAATTTCGTCCCTGGCTGGGGGAGATCGACGGAAGGTCCGGCTTTCCAAGTATTTGACCCCAAAACAAGAACATGGGCTTCTCTCCTAAGTCTTCCAACTGGAGACGACCTTTCCTGGCAAGCCATTCGTCCATCCAATGTTGCTGTTGTGCGCACCAAGATCTTTGTCACACTTCCCACAAAGGAGGACACAGAAGGCCAGCTACTCTGCTTTGACGTGGCTGACCCCAAGGCAACATGGTCTGATCGTGAAGCCCGCATTCGGGACGATATGGGTGTTTTCCCAGAAATTTTCAACAAGGTTTTAGTCGTGGACTCGCAGGAGGAGGATGAGAAGCTAATCTTTAGCTTTGATTATGAAAACATACTAGTCTCCCGCATGGTGCTGTCCGCTCAGGGTGAAACTGATTGTATTGAACTAGTAGCTGAGATAAGTCTGTCTGGTGAACTTGAAGGATTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.68

Weight (kDa)

4.95

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	611
AccBSI	CCGCTC	1 cut(s)	851
AciI	CCGC	4 cut(s)	345, 715, 835, 849
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	3 cut(s)	128, 460, 747
AfaI	GTAC	4 cut(s)	16, 89, 97, 107
AfiI	CCNNNNNNNGG	7 cut(s)	54, 55, 413, 475, 476, 720, 721
AgsI	TTSAA	4 cut(s)	133, 754, 875, 911
AhdI	GACNNNNNGTC	1 cut(s)	492
AhlI	ACTAGT	2 cut(s)	826, 877
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	5 cut(s)	412, 438, 447, 469, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	6 cut(s)	226, 425, 661, 796, 807, 884
AluI	AGCT	6 cut(s)	226, 425, 661, 796, 807, 884
Alw26I	GTCTC	3 cut(s)	379, 555, 835
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	4 cut(s)	32, 42, 339, 655
ApeKI	GCWGC	2 cut(s)	348, 425
ApoI	RAATTY	3 cut(s)	128, 460, 747
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	43, 494
AsuC2I	CCSGG	2 cut(s)	49, 50
AsuHPI	GGTGA	3 cut(s)	86, 869, 914
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
BbsI	GAAGAC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	335, 412
BccI	CCATC	3 cut(s)	161, 305, 598
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	5 cut(s)	414, 440, 449, 471, 574
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	2 cut(s)	49, 50
BcoDI	GTCTC	3 cut(s)	379, 555, 835
BcuI	ACTAGT	2 cut(s)	826, 877
BfaI	CTAG	3 cut(s)	278, 827, 878
BfmI	CTRYAG	1 cut(s)	426
BglII	AGATCT	1 cut(s)	618
BisI	GCNGC	3 cut(s)	346, 349, 426
BlsI	GCNGC	3 cut(s)	347, 350, 427
Bme1390I	CCNGG	7 cut(s)	49, 50, 414, 440, 449, 471, 574
Bme18I	GGWCC	1 cut(s)	494
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	43, 494
BmiI	GGNNCC	2 cut(s)	45, 404
BmrFI	CCNGG	7 cut(s)	49, 50, 414, 440, 449, 471, 574
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	852
BpuMI	CCSGG	2 cut(s)	49, 50
Bsa29I	ATCGAT	1 cut(s)	136
BsaJI	CCNNGG	6 cut(s)	29, 47, 48, 412, 469, 687
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 55, 413, 475, 476, 720, 721
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	5 cut(s)	414, 440, 449, 471, 574
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	6 cut(s)	29, 47, 48, 412, 469, 687
BseGI	GGATG	2 cut(s)	590, 793
BseLI	CCNNNNNNNGG	7 cut(s)	54, 55, 413, 475, 476, 720, 721
BseMII	CTCAG	2 cut(s)	866, 876
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	335, 412
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	4 cut(s)	34, 44, 341, 657
BshVI	ATCGAT	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	49, 342, 497
BslFI	GGGAC	3 cut(s)	344, 452, 737
BslI	CCNNNNNNNGG	7 cut(s)	54, 55, 413, 475, 476, 720, 721
BsmAI	GTCTC	3 cut(s)	379, 555, 835
BsmBI	CGTCTC	1 cut(s)	555
BsmFI	GGGAC	3 cut(s)	344, 452, 737
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	4 cut(s)	34, 44, 341, 657
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	390, 482, 618, 703
BspACI	CCGC	4 cut(s)	345, 715, 835, 849
BspANI	GGCC	4 cut(s)	34, 44, 341, 657
BspCNI	CTCAG	2 cut(s)	865, 877
BspDI	ATCGAT	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	45, 404
BspMAI	CTGCAG	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	851
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	6 cut(s)	29, 47, 48, 412, 469, 687
BssMI	GATC	4 cut(s)	390, 482, 618, 703
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	5 cut(s)	414, 440, 449, 471, 574
Bst4CI	ACNGT	3 cut(s)	87, 143, 171
BstC8I	GCNNGC	4 cut(s)	343, 579, 659, 715
BstDEI	CTNAG	3 cut(s)	545, 852, 885
BstF5I	GGATG	2 cut(s)	590, 793
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	4 cut(s)	393, 485, 621, 706
BstMAI	GTCTC	3 cut(s)	379, 555, 835
BstMBI	GATC	4 cut(s)	390, 482, 618, 703
BstNI	CCWGG	5 cut(s)	414, 440, 449, 471, 574
BstSCI	CCNGG	7 cut(s)	47, 48, 412, 438, 447, 469, 572
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	335, 412
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	618
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	618
Bsu15I	ATCGAT	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	34, 44, 341, 657
BsuTUI	ATCGAT	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	590, 793
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	4 cut(s)	343, 579, 659, 715
CfoI	GCGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	43, 494
Cfr9I	CCCGGG	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	15, 88, 96, 106
CviAII	CATG	4 cut(s)	199, 531, 696, 838
CviQI	GTAC	4 cut(s)	15, 88, 96, 106
DdeI	CTNAG	3 cut(s)	545, 852, 885
DpnI	GATC	4 cut(s)	392, 484, 620, 705
DpnII	GATC	4 cut(s)	390, 482, 618, 703
DraI	TTTAAA	1 cut(s)	919
DriI	GACNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	5 cut(s)	412, 438, 447, 469, 572
EcoT14I	CCWWGG	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	687
Esp3I	CGTCTC	1 cut(s)	555
FaeI	CATG	4 cut(s)	202, 534, 699, 841
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	3 cut(s)	344, 452, 737
FatI	CATG	4 cut(s)	198, 530, 695, 837
FauI	CCCGC	2 cut(s)	722, 842
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	346, 349, 426
FokI	GGATG	2 cut(s)	577, 800
Fsp4HI	GCNGC	3 cut(s)	346, 349, 426
FspAI	RTGCGCAY	1 cut(s)	611
FspBI	CTAG	3 cut(s)	278, 827, 878
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	3 cut(s)	346, 349, 426
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	34, 44, 341, 657
HapII	CCGG	3 cut(s)	49, 342, 497
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	202, 534, 699, 841
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	193, 218, 330, 773
HpaII	CCGG	3 cut(s)	49, 342, 497
HphI	GGTGA	3 cut(s)	86, 869, 914
Hpy166II	GTNNAC	3 cut(s)	148, 772, 905
Hpy188I	TCNGA	4 cut(s)	67, 217, 256, 703
Hpy188III	TCNNGA	4 cut(s)	278, 327, 707, 722
Hpy8I	GTNNAC	3 cut(s)	148, 772, 905
Hpy99I	CGWCG	1 cut(s)	490
HpyAV	CCTTC	3 cut(s)	485, 647, 905
HpyCH4III	ACNGT	3 cut(s)	87, 143, 171
HpyCH4IV	ACGT	2 cut(s)	90, 675
HpyCH4V	TGCA	2 cut(s)	367, 428
HpyF3I	CTNAG	3 cut(s)	545, 852, 885
HpySE526I	ACGT	2 cut(s)	90, 675
Hsp92II	CATG	4 cut(s)	202, 534, 699, 841
HspAI	GCGC	1 cut(s)	610
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	390, 482, 618, 703
Lsp1109I	GCAGC	2 cut(s)	335, 412
MaeI	CTAG	3 cut(s)	278, 827, 878
MaeII	ACGT	2 cut(s)	90, 675
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	4 cut(s)	392, 484, 620, 705
MbiI	CCGCTC	1 cut(s)	851
MboI	GATC	4 cut(s)	390, 482, 618, 703
MboII	GAAGA	3 cut(s)	198, 231, 542
MflI	RGATCY	1 cut(s)	618
MluCI	AATT	5 cut(s)	128, 158, 250, 460, 747
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	2 cut(s)	279, 578
MnlI	CCTC	8 cut(s)	24, 48, 64, 274, 445, 637, 775, 778
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	1 cut(s)	918
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	49, 342, 497
MspR9I	CCNGG	7 cut(s)	49, 50, 414, 440, 449, 471, 574
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	5 cut(s)	414, 440, 449, 471, 574
NaeI	GCCGGC	1 cut(s)	343
NciI	CCSGG	2 cut(s)	49, 50
NdeII	GATC	4 cut(s)	390, 482, 618, 703
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	4 cut(s)	202, 534, 699, 841
NlaIV	GGNNCC	2 cut(s)	45, 404
NmeAIII	GCCGAG	2 cut(s)	54, 60
NmuCI	GTSAC	1 cut(s)	625
NsbI	TGCGCA	1 cut(s)	611
PctI	GAATGC	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	193, 218, 330
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	347, 350, 427
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
Psp6I	CCWGG	5 cut(s)	412, 438, 447, 469, 572
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	5 cut(s)	412, 438, 447, 469, 572
PspN4I	GGNNCC	2 cut(s)	45, 404
PspPI	GGNCC	2 cut(s)	43, 494
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	618
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	16, 89, 97, 107
RsaNI	GTAC	4 cut(s)	15, 88, 96, 106
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	3 cut(s)	346, 349, 426
Sau3AI	GATC	4 cut(s)	390, 482, 618, 703
Sau96I	GGNCC	2 cut(s)	43, 494
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	7 cut(s)	49, 50, 414, 440, 449, 471, 574
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	494
SmaI	CCCGGG	1 cut(s)	50
SmiI	ATTTAAAT	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	302
SpeI	ACTAGT	2 cut(s)	826, 877
Sse9I	AATT	5 cut(s)	128, 158, 250, 460, 747
SsiI	CCGC	4 cut(s)	345, 715, 835, 849
SspMI	CTAG	3 cut(s)	278, 827, 878
StyD4I	CCNGG	7 cut(s)	47, 48, 412, 438, 447, 469, 572
StyI	CCWWGG	1 cut(s)	687
SwaI	ATTTAAAT	1 cut(s)	919
TaaI	ACNGT	3 cut(s)	87, 143, 171
TaiI	ACGT	2 cut(s)	93, 678
TaqI	TCGA	3 cut(s)	136, 328, 485
TasI	AATT	5 cut(s)	128, 158, 250, 460, 747
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	193, 218, 330
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	2 cut(s)	348, 425
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	2 cut(s)	408, 831
TspGWI	ACGGA	2 cut(s)	32, 503
TspMI	CCCGGG	1 cut(s)	48
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	3 cut(s)	128, 460, 747
XbaI	TCTAGA	1 cut(s)	277
XmaI	CCCGGG	1 cut(s)	48
XspI	CTAG	3 cut(s)	278, 827, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.