Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

65937817 .. 65938242

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG433300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCGGGAGATCGACGGTAAGCTATACGCTCTCTCTGGCTATTACATGGGAGTTGCGGCTTTTGAGGTATTTGACCCCAAAACCAATCATGTGTGGGCTCCTCTCCCCAGTCTTCCAATTGGGAATGATAGGCCTCCCTGGGAAGCGCTTTCTTCATCCTCCTGTTCAGTTGTAGGCACCAAGATCTTGGTCACACTTACGTTAGACTCTAGGGAGACAGTAGTGAAGATACTCTGCTTCGACGGGTGGCAGTTTCATAGTTCTATCCCCGAATTTTACAACGAGGTTTTAGTGTTGGACTTGGAGGATGACGACTGTGAGAAGCTATTGTTTACGTATGATTTTGATTATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGATGGTGAACCTAATTGTATTCAACAGCTAGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.98

Weight (kDa)

4.45

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	2 cut(s)	4, 56
AcsI	RAATTY	1 cut(s)	272
AfeI	AGCGCT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	5 cut(s)	22, 325, 379, 415, 419
AluI	AGCT	5 cut(s)	22, 325, 379, 415, 419
Alw26I	GTCTC	2 cut(s)	209, 370
Aor51HI	AGCGCT	1 cut(s)	147
AoxI	GGCC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	404
AsuNHI	GCTAGC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	104
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	209, 370
BfaI	CTAG	3 cut(s)	210, 416, 420
BfoI	RGCGCY	1 cut(s)	149
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	99, 178
BmrFI	CCNGG	1 cut(s)	139
BmrI	ACTGGG	1 cut(s)	102
BmtI	GCTAGC	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	137, 138
Bse1I	ACTGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	2 cut(s)	155, 313
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	209, 370
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	9, 183
BspACI	CCGC	2 cut(s)	4, 56
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	99, 178
BspOI	GCTAGC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	2 cut(s)	9, 183
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	17, 220, 317
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	155, 313
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	12, 186
BstMAI	GTCTC	2 cut(s)	209, 370
BstMBI	GATC	2 cut(s)	9, 183
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	155, 313
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	148
CviAII	CATG	3 cut(s)	46, 89, 373
CviJI	RGCY	9 cut(s)	22, 39, 59, 98, 133, 325, 379, 415, 419
CviKI_1	RGCY	9 cut(s)	22, 39, 59, 98, 133, 325, 379, 415, 419
DpnI	GATC	2 cut(s)	11, 185
DpnII	GATC	2 cut(s)	9, 183
Eco105I	TACGTA	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	100
Eco47III	AGCGCT	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	3 cut(s)	49, 92, 376
FaiI	YATR	6 cut(s)	25, 47, 90, 258, 339, 374
FatI	CATG	3 cut(s)	45, 88, 372
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	142, 320
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	3 cut(s)	210, 416, 420
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	49, 92, 376
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	206, 363
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	333, 395
Hpy8I	GTNNAC	2 cut(s)	333, 395
Hpy99I	CGWCG	2 cut(s)	17, 245
HpyCH4III	ACNGT	3 cut(s)	17, 220, 317
HpyCH4IV	ACGT	2 cut(s)	200, 335
HpySE526I	ACGT	2 cut(s)	200, 335
Hsp92II	CATG	3 cut(s)	49, 92, 376
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	9, 183
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	21, 121, 124, 151, 175, 382
MaeI	CTAG	3 cut(s)	210, 416, 420
MaeII	ACGT	2 cut(s)	200, 335
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	11, 185
MboI	GATC	2 cut(s)	9, 183
MboII	GAAGA	3 cut(s)	104, 144, 238
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	3 cut(s)	117, 272, 400
MlyI	GAGTC	2 cut(s)	200, 372
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	58, 111, 144, 169, 277, 298
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	9, 183
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	49, 92, 376
NlaIV	GGNNCC	2 cut(s)	99, 178
NmuCI	GTSAC	1 cut(s)	190
PasI	CCCWGGG	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	200, 371
PpsI	GAGTC	2 cut(s)	200, 371
Ppu21I	YACGTR	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	99, 178
PsuI	RGATCY	1 cut(s)	183
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	9, 183
SchI	GAGTC	2 cut(s)	200, 372
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	100
SnaBI	TACGTA	1 cut(s)	336
Sse9I	AATT	3 cut(s)	117, 272, 400
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	2 cut(s)	4, 56
SspMI	CTAG	3 cut(s)	210, 416, 420
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	17, 220, 317
TaiI	ACGT	2 cut(s)	203, 338
TaqI	TCGA	2 cut(s)	12, 240
TasI	AATT	3 cut(s)	117, 272, 400
TauI	GCSGC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	144, 245, 389
XapI	RAATTY	1 cut(s)	272
XspI	CTAG	3 cut(s)	210, 416, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.