Rh1AG440300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003948
Physical Location & Seq
Reverse (-)
66281054 .. 66282271
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG440300.1

Sequence Viewer

Length: 969 bp
ATGGGTGGAGGAGCAAGGTCTCGGGCGAGGGCCAAGAAGAGGGCGGAGGAGAGTAGGAAAGCCTACGAGGCTCGGGAAAGGAAGAAACCCGACGAGGCTGAACCATTGCTGTATCTATGCACTTTCGAGATCTACCGTGGAGGTTTAGCCGGATACCGTGTCCAGAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAGGTACTCCTAATCCTAAACCCCACTATATGATTCCGGAATTGGAACCGGAAAAACGTCGTCCCTGGATGCGGGAGATCGACGGTAGGCTATACGCTCTCTCTGGCGATGACATGGGATATGCGGCTTTTGAGGTATTTGACCCCAAAACCGACCATGTATGGGCTGCTCTCCCCAAGCTTCCAATTGGGATTGACGGGCTTTCTTTATCCTCGTGTGCCGTTGTGGGCACCAAGATCTTGGTCACACTTCCGTTAAAGTCTAGGGTGGGAGTAGTCAAGATACTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTACACTTGAAGAACCACCCTGGTGGCAGTTTAATAGTGTTTTCCCCGATTTTTACAACGAGGTTTTAGTTTTAGACTTGGAGGATGACGACTGTGAGAAGCTACTGTTTACTTATGATTTTGAATATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGAAGGTGAACCTAAGTGTATTCAACCGCTAGATGAGATAGATTTGCCTGATGAGTTTAAGAACTTGGATGATTTTTTAGCAACTTCATACAGCTGTGCTCATCTTGGAGGTCGAAGAGTATGCTTTTCATTCGTGCATTTGCTGACTCTTTTTGTGTTCACCTTCGAATTTTCCTATTCGATTTCTGGAATATTCTCTGTCAAAGCCCTGGGTCATCGCCTGTTCGAGTACTACTCGAATGAGGAACTTCGTTCTATCGATTTGGGTGGTTGCTTTGTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

36.83

Weight (kDa)

5.34

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 4 cut(s) 44, 271, 323, 710
AcsI RAATTY 1 cut(s) 851
AfaI GTAC 2 cut(s) 205, 914
AfiI CCNNNNNNNGG 5 cut(s) 39, 169, 183, 270, 361
AgsI TTSAA 3 cut(s) 530, 644, 707
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 4 cut(s) 182, 263, 539, 891
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AleI CACNNNNGTG 1 cut(s) 541
AluBI AGCT 4 cut(s) 379, 622, 676, 777
AluI AGCT 4 cut(s) 379, 622, 676, 777
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 2 cut(s) 24, 667
Ama87I CYCGRG 2 cut(s) 21, 72
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 851
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 494, 701, 835
AsuII TTCGAA 1 cut(s) 849
AvaI CYCGRG 2 cut(s) 21, 72
BaeGI GKGCMC 1 cut(s) 431
BanI GGYRCC 1 cut(s) 428
BauI CACGAG 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 786, 820
BciT130I CCWGG 4 cut(s) 184, 265, 541, 893
BciVI GTATCC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 24, 667
BfaI CTAG 2 cut(s) 462, 713
BfuI GTATCC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 129, 435
BisI GCNGC 2 cut(s) 324, 366
BlsI GCNGC 2 cut(s) 325, 367
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 4 cut(s) 184, 265, 541, 893
BmeT110I CYCGRG 2 cut(s) 21, 72
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 174, 246, 430
BmrFI CCNGG 4 cut(s) 184, 265, 541, 893
BmsI GCATC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BpmI CTGGAG 1 cut(s) 649
Bpu14I TTCGAA 1 cut(s) 849
Bsa29I ATCGAT 1 cut(s) 942
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 6 cut(s) 136, 182, 263, 539, 891, 892
BsaWI WCCGGW 2 cut(s) 235, 247
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 169, 183, 270, 361
Bse3DI GCAATG 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 4 cut(s) 184, 265, 541, 893
BseCI ATCGAT 1 cut(s) 942
BseDI CCNNGG 6 cut(s) 136, 182, 263, 539, 891, 892
BseGI GGATG 3 cut(s) 273, 610, 757
BseLI CCNNNNNNNGG 5 cut(s) 39, 169, 183, 270, 361
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 498
BseRI GAGGAG 2 cut(s) 24, 62
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 942
BsiHKAI GWGCWC 1 cut(s) 784
BsiHKCI CYCGRG 2 cut(s) 21, 72
BsiSI CCGG 3 cut(s) 150, 236, 248
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 5 cut(s) 39, 169, 183, 270, 361
BsmAI GTCTC 2 cut(s) 24, 667
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 2 cut(s) 21, 72
Bsp119I TTCGAA 1 cut(s) 849
Bsp1286I GDGCHC 2 cut(s) 431, 784
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 4 cut(s) 129, 276, 435, 512
BspACI CCGC 4 cut(s) 44, 271, 323, 710
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 499
BspDI ATCGAT 1 cut(s) 942
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 174, 246, 430
BspT104I TTCGAA 1 cut(s) 849
BspT107I GGYRCC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 104
BssECI CCNNGG 6 cut(s) 136, 182, 263, 539, 891, 892
BssMI GATC 4 cut(s) 129, 276, 435, 512
BssSI CACGAG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 4 cut(s) 184, 265, 541, 893
Bst4CI ACNGT 5 cut(s) 137, 158, 284, 614, 627
Bst6I CTCTTC 2 cut(s) 32, 793
BstBI TTCGAA 1 cut(s) 849
BstDEI CTNAG 2 cut(s) 507, 696
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 3 cut(s) 273, 610, 757
BstKTI GATC 4 cut(s) 132, 279, 438, 515
BstMAI GTCTC 2 cut(s) 24, 667
BstMBI GATC 4 cut(s) 129, 276, 435, 512
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 4 cut(s) 184, 265, 541, 893
BstSCI CCNGG 4 cut(s) 182, 263, 539, 891
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 2 cut(s) 129, 435
BstXI CCANNNNNNTGG 2 cut(s) 439, 543
BstYI RGATCY 2 cut(s) 129, 435
Bsu15I ATCGAT 1 cut(s) 942
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 32
BsuTUI ATCGAT 1 cut(s) 942
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 2 cut(s) 321, 884
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 273, 610, 757
Cfr13I GGNCC 1 cut(s) 30
ClaI ATCGAT 1 cut(s) 942
Csp6I GTAC 2 cut(s) 204, 913
CviAII CATG 4 cut(s) 313, 356, 516, 670
CviQI GTAC 2 cut(s) 204, 913
DdeI CTNAG 2 cut(s) 507, 696
DpnI GATC 4 cut(s) 131, 278, 437, 514
DpnII GATC 4 cut(s) 129, 276, 435, 512
Eam1104I CTCTTC 2 cut(s) 32, 793
EarI CTCTTC 2 cut(s) 32, 793
EciI GGCGGA 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 21, 72
EcoRII CCWGG 4 cut(s) 182, 263, 539, 891
FaeI CATG 4 cut(s) 316, 359, 519, 673
FaqI GGGAC 1 cut(s) 246
FatI CATG 4 cut(s) 312, 355, 515, 669
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 324, 366
FokI GGATG 3 cut(s) 280, 617, 764
Fsp4HI GCNGC 2 cut(s) 324, 366
FspBI CTAG 2 cut(s) 462, 713
GluI GCNGC 2 cut(s) 324, 366
GsuI CTGGAG 1 cut(s) 649
HaeIII GGCC 1 cut(s) 32
HapII CCGG 3 cut(s) 150, 236, 248
Hin1II CATG 4 cut(s) 316, 359, 519, 673
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 232, 660, 829
HpaII CCGG 3 cut(s) 150, 236, 248
HphI GGTGA 3 cut(s) 494, 701, 835
Hpy166II GTNNAC 3 cut(s) 630, 692, 843
Hpy188III TCNNGA 6 cut(s) 74, 127, 163, 236, 478, 870
Hpy8I GTNNAC 3 cut(s) 630, 692, 843
Hpy99I CGWCG 4 cut(s) 95, 261, 284, 497
HpyAV CCTTC 2 cut(s) 680, 856
HpyCH4III ACNGT 5 cut(s) 137, 158, 284, 614, 627
HpyCH4IV ACGT 2 cut(s) 256, 495
HpyCH4V TGCA 2 cut(s) 120, 820
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 507, 696
HpySE526I ACGT 2 cut(s) 256, 495
Hsp92II CATG 4 cut(s) 316, 359, 519, 673
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 4 cut(s) 129, 276, 435, 512
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 462, 713
MaeII ACGT 2 cut(s) 256, 495
MaeIII GTNAC 1 cut(s) 442
MalI GATC 4 cut(s) 131, 278, 437, 514
MboI GATC 4 cut(s) 129, 276, 435, 512
MboII GAAGA 4 cut(s) 49, 94, 542, 810
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 129, 435
MhlI GDGCHC 2 cut(s) 431, 784
MluCI AATT 3 cut(s) 239, 384, 851
MlyI GAGTC 2 cut(s) 669, 823
MroI TCCGGA 1 cut(s) 235
MseI TTAA 3 cut(s) 455, 552, 741
MslI CAYNNNNRTG 1 cut(s) 541
MspA1I CMGCKG 1 cut(s) 777
MspI CCGG 3 cut(s) 150, 236, 248
MspR9I CCNGG 4 cut(s) 184, 265, 541, 893
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 4 cut(s) 184, 265, 541, 893
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 4 cut(s) 129, 276, 435, 512
NlaIII CATG 4 cut(s) 316, 359, 519, 673
NlaIV GGNNCC 3 cut(s) 174, 246, 430
NmuCI GTSAC 1 cut(s) 442
NspV TTCGAA 1 cut(s) 849
OliI CACNNNNGTG 1 cut(s) 541
PasI CCCWGGG 1 cut(s) 892
PfeI GAWTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 2 cut(s) 325, 367
PleI GAGTC 2 cut(s) 668, 823
PpsI GAGTC 2 cut(s) 668, 823
Psp6I CCWGG 4 cut(s) 182, 263, 539, 891
PspGI CCWGG 4 cut(s) 182, 263, 539, 891
PspN4I GGNNCC 3 cut(s) 174, 246, 430
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 2 cut(s) 129, 435
PvuII CAGCTG 1 cut(s) 777
RsaI GTAC 2 cut(s) 205, 914
RsaNI GTAC 2 cut(s) 204, 913
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 3 cut(s) 455, 552, 741
SatI GCNGC 2 cut(s) 324, 366
Sau3AI GATC 4 cut(s) 129, 276, 435, 512
Sau96I GGNCC 1 cut(s) 30
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 2 cut(s) 669, 823
ScrFI CCNGG 4 cut(s) 184, 265, 541, 893
SduI GDGCHC 2 cut(s) 431, 784
SfaNI GCATC 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 541
Sse9I AATT 3 cut(s) 239, 384, 851
SsiI CCGC 4 cut(s) 44, 271, 323, 710
SspI AATATT 2 cut(s) 647, 876
SspMI CTAG 2 cut(s) 462, 713
StyD4I CCNGG 4 cut(s) 182, 263, 539, 891
TaaI ACNGT 5 cut(s) 137, 158, 284, 614, 627
TaiI ACGT 2 cut(s) 259, 498
TaqI TCGA 9 cut(s) 126, 279, 492, 796, 849, 863, 909, 920, 942
TasI AATT 3 cut(s) 239, 384, 851
TatI WGTACW 1 cut(s) 912
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 3 cut(s) 455, 552, 741
Tru9I TTAA 3 cut(s) 455, 552, 741
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 5 cut(s) 178, 686, 699, 759, 801
TspGWI ACGGA 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 851
XspI CTAG 2 cut(s) 462, 713
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.