FvH4_5g34640

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003948
Physical Location & Seq
Reverse (-)
25352835 .. 25357599
4765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34640.t1

Sequence Viewer

Length: 1170 bp
ATGGCAGGAGGGTTTCTGGCGAGGAAGAAGAAGAGGGCGGAAAAAATACGACAGGTGGAAATTAGCAAAGCGTACGAGGAACGGGAACGGAAGAAGGGTCCCGGGTCTGATCCATTGCTGTATATCTGTACTTTCGAGGAATACAAACGTCACGGTACAGCTGGCTTTTCAGCCGGTTACGGTGTCCACACCATCCGAGTCTCCGATTTGAATGGTTCTGACGATAAGCCAAGGCCCGAGAAGCTACGCGAAGTTGCTAATCTGCAAGGGGAACACCTTCCACTACACATGGGTTTCGCTGTCTTTGGCTCTCGCATTGTTCTGGCCGGCGGCTGGTTTCTGCATCCGAAGATAAAGCATCCGATGCCGACCTATGTTTTGGAGACCGATCCAACTGAGGAACCCAACCCTAGCTTCATCAGCACCACTAGTAGTAGTAGACCCCGCTACATGATTCCGCAGTTGAAAGGACATAAAAAATCTCAGATCTGGCTTCGGGAGATTGACGGTAAGCTGTATGCTCTCTCCGGTACAGACTCGAAACAAATGATTTTTCAGGTATTTGACCCCAAAGCCAAACCTGAATGGGATCGTCTCCCCGCGCCTCCATTCGATGATTGGAGTGCGTTTTATTATTTTTCATCATGTGTAGTTGTGGGCACCAAGATCATTCTCACAACTAAGAAGGAAAGGGAATTCAAGACACTCTGCTTTGACGTGGCTCACCCTAAGGGATGGACTAGCCTTGAAGCACCCTGCTCTGACCCTCTTTGTGTGTCCCCTGAGTTCTACAACCCGGTTTTAGTTTTGGACGTCAAGGAGGATCAGAATGGCTTTGACAAGCTAATGTTTACTTTTGATAATGGTGATAACCAAATTCTAGTCTCCAGAATGAAGTTGTCCGATGAAGGGGTACCTGTTTCTGTTGAATCAGTAGCTGAACTAGATTTGCCCGACAATCGTGACATTGAACCAACTTCATACAATTTTGCCCATCTTGGAGATCAAACAGTATGCTTTGCATTCATGGATATATTCACTCTTCATGTCATCACTTTCAATTTTACCTATGCCCCATTCTCTCACAAATTCCTGGGTCACATGTTCAACAAATTTAACTCGCGTGAGGAACTTTCTTGGATCAACATTAGTGGTTGCTTTGTGCTCTAA

Protein Analysis

390

Amino Acids

44.29

Weight (kDa)

6.47

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 147 - 248 2.6e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 816
Acc65I GGTACC 1 cut(s) 913
AccB1I GGYRCC 2 cut(s) 659, 913
AccI GTMKAC 1 cut(s) 439
AccII CGCG 3 cut(s) 249, 602, 1123
AciI CCGC 5 cut(s) 38, 330, 445, 458, 600
AclWI GGATC 5 cut(s) 104, 383, 597, 831, 1148
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 4 cut(s) 695, 876, 1088, 1112
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 5 cut(s) 74, 130, 157, 532, 915
AfiI CCNNNNNNNGG 2 cut(s) 333, 909
AflIII ACRYGT 1 cut(s) 1101
AgsI TTSAA 8 cut(s) 211, 466, 700, 749, 929, 971, 1060, 1108
AhlI ACTAGT 1 cut(s) 428
AjiI CACGTC 1 cut(s) 718
AjnI CCWGG 1 cut(s) 1092
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 6 cut(s) 161, 244, 414, 514, 844, 938
AluI AGCT 6 cut(s) 161, 244, 414, 514, 844, 938
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 4 cut(s) 205, 377, 599, 889
AlwI GGATC 5 cut(s) 104, 383, 597, 831, 1148
AlwNI CAGNNNCTG 1 cut(s) 938
Ama87I CYCGRG 2 cut(s) 101, 236
AoxI GGCC 2 cut(s) 233, 324
ApoI RAATTY 4 cut(s) 695, 876, 1088, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp700I GAANNNNTTC 1 cut(s) 276
Asp718I GGTACC 1 cut(s) 913
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 2 cut(s) 98, 234
AsuC2I CCSGG 3 cut(s) 102, 103, 797
AsuHPI GGTGA 2 cut(s) 716, 878
AvaI CYCGRG 2 cut(s) 101, 236
AvaII GGWCC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 729
BaeGI GKGCMC 1 cut(s) 662
BanI GGYRCC 2 cut(s) 659, 913
Bbv12I GWGCWC 1 cut(s) 1167
BccI CCATC 3 cut(s) 200, 729, 1002
BciT130I CCWGG 1 cut(s) 1094
BcnI CCSGG 3 cut(s) 102, 103, 797
BcoDI GTCTC 4 cut(s) 205, 377, 599, 889
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 5 cut(s) 411, 429, 741, 881, 944
BglII AGATCT 1 cut(s) 486
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme1390I CCNGG 4 cut(s) 102, 103, 797, 1094
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 2 cut(s) 101, 236
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 2 cut(s) 98, 234
BmiI GGNNCC 5 cut(s) 99, 100, 402, 661, 915
BmrFI CCNGG 4 cut(s) 102, 103, 797, 1094
BmsI GCATC 3 cut(s) 352, 354, 367
BpmI CTGGAG 1 cut(s) 871
BpuMI CCSGG 3 cut(s) 102, 103, 797
BsaHI GRCGYC 1 cut(s) 813
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 101, 230, 1093
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 909
Bse118I RCCGGY 2 cut(s) 173, 326
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 1094
BseDI CCNNGG 3 cut(s) 101, 230, 1093
BseGI GGATG 4 cut(s) 192, 343, 358, 740
BseLI CCNNNNNNNGG 2 cut(s) 333, 909
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 3 cut(s) 387, 497, 774
BseSI GKGCMC 1 cut(s) 662
Bsh1236I CGCG 3 cut(s) 249, 602, 1123
BshFI GGCC 2 cut(s) 235, 326
BshNI GGYRCC 2 cut(s) 659, 913
BsiHKAI GWGCWC 1 cut(s) 1167
BsiHKCI CYCGRG 2 cut(s) 101, 236
BsiSI CCGG 5 cut(s) 102, 174, 327, 528, 797
BsiWI CGTACG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 84, 763
BslI CCNNNNNNNGG 2 cut(s) 333, 909
BsmAI GTCTC 4 cut(s) 205, 377, 599, 889
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 2 cut(s) 84, 763
BsmI GAATGC 1 cut(s) 1022
BsnI GGCC 2 cut(s) 235, 326
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 2 cut(s) 101, 236
Bsp1286I GDGCHC 2 cut(s) 662, 1167
Bsp143I GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
BspACI CCGC 5 cut(s) 38, 330, 445, 458, 600
BspANI GGCC 2 cut(s) 235, 326
BspCNI CTCAG 3 cut(s) 388, 496, 775
BspFNI CGCG 3 cut(s) 249, 602, 1123
BspLI GGNNCC 5 cut(s) 99, 100, 402, 661, 915
BspPI GGATC 5 cut(s) 104, 383, 597, 831, 1148
BspT107I GGYRCC 2 cut(s) 659, 913
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 173, 326
BssAI RCCGGY 2 cut(s) 173, 326
BssECI CCNNGG 3 cut(s) 101, 230, 1093
BssMI GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
BssNI GRCGYC 1 cut(s) 813
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 1094
Bst4CI ACNGT 4 cut(s) 155, 182, 509, 1012
Bst6I CTCTTC 2 cut(s) 26, 1047
BstACI GRCGYC 1 cut(s) 813
BstAPI GCANNNNNTGC 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 163, 328
BstDEI CTNAG 5 cut(s) 396, 483, 681, 729, 783
BstF5I GGATG 4 cut(s) 192, 343, 358, 740
BstFNI CGCG 3 cut(s) 249, 602, 1123
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 8 cut(s) 112, 391, 489, 592, 669, 826, 1006, 1143
BstMAI GTCTC 4 cut(s) 205, 377, 599, 889
BstMBI GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
BstMWI GCNNNNNNNGC 3 cut(s) 241, 364, 420
BstNI CCWGG 1 cut(s) 1094
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 4 cut(s) 100, 101, 795, 1092
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 3 cut(s) 249, 602, 1123
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 729
BsuRI GGCC 2 cut(s) 235, 326
BtrI CACGTC 1 cut(s) 718
BtsCI GGATG 4 cut(s) 192, 343, 358, 740
Cac8I GCNNGC 2 cut(s) 163, 328
CaiI CAGNNNCTG 1 cut(s) 938
CfoI GCGC 1 cut(s) 604
Cfr10I RCCGGY 2 cut(s) 173, 326
Cfr13I GGNCC 2 cut(s) 98, 234
Cfr9I CCCGGG 1 cut(s) 101
Csp6I GTAC 5 cut(s) 73, 129, 156, 531, 914
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 6 cut(s) 289, 451, 645, 1027, 1046, 1102
CviQI GTAC 5 cut(s) 73, 129, 156, 531, 914
DdeI CTNAG 5 cut(s) 396, 483, 681, 729, 783
DpnI GATC 8 cut(s) 111, 390, 488, 591, 668, 825, 1005, 1142
DpnII GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 26, 1047
EarI CTCTTC 2 cut(s) 26, 1047
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 2 cut(s) 101, 236
EcoO109I RGGNCCY 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 1092
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 6 cut(s) 292, 454, 648, 1030, 1049, 1105
FaqI GGGAC 2 cut(s) 84, 763
FatI CATG 6 cut(s) 288, 450, 644, 1026, 1045, 1101
FauI CCCGC 2 cut(s) 452, 607
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 4 cut(s) 179, 330, 345, 747
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 5 cut(s) 411, 429, 741, 881, 944
GlaI GCGC 1 cut(s) 603
GluI GCNGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 871
HaeIII GGCC 2 cut(s) 235, 326
HapII CCGG 5 cut(s) 102, 174, 327, 528, 797
HhaI GCGC 1 cut(s) 604
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 6 cut(s) 292, 454, 648, 1030, 1049, 1105
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 4 cut(s) 198, 454, 536, 929
HpaII CCGG 5 cut(s) 102, 174, 327, 528, 797
HphI GGTGA 2 cut(s) 716, 878
Hpy166II GTNNAC 3 cut(s) 187, 440, 852
Hpy188III TCNNGA 4 cut(s) 497, 700, 888, 962
Hpy8I GTNNAC 3 cut(s) 187, 440, 852
HpyAV CCTTC 4 cut(s) 88, 287, 679, 902
HpyCH4III ACNGT 4 cut(s) 155, 182, 509, 1012
HpyCH4IV ACGT 3 cut(s) 148, 717, 813
HpyCH4V TGCA 3 cut(s) 265, 343, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 364, 420
HpyF3I CTNAG 5 cut(s) 396, 483, 681, 729, 783
HpySE526I ACGT 3 cut(s) 148, 717, 813
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 6 cut(s) 292, 454, 648, 1030, 1049, 1105
HspAI GCGC 1 cut(s) 602
KflI GGGWCCC 1 cut(s) 98
KpnI GGTACC 1 cut(s) 917
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
LweI GCATC 3 cut(s) 352, 354, 367
MaeI CTAG 5 cut(s) 411, 429, 741, 881, 944
MaeII ACGT 3 cut(s) 148, 717, 813
MaeIII GTNAC 4 cut(s) 149, 176, 962, 1097
MalI GATC 8 cut(s) 111, 390, 488, 591, 668, 825, 1005, 1142
MboI GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
MboII GAAGA 6 cut(s) 37, 40, 43, 103, 361, 1034
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 662, 1167
MluCI AATT 7 cut(s) 60, 695, 876, 985, 1060, 1088, 1112
MlyI GAGTC 2 cut(s) 207, 530
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 9 cut(s) 15, 27, 70, 130, 391, 615, 777, 814, 1120
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 1 cut(s) 1116
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 5 cut(s) 102, 174, 327, 528, 797
MspR9I CCNGG 4 cut(s) 102, 103, 797, 1094
Mva1269I GAATGC 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 1094
MvnI CGCG 3 cut(s) 249, 602, 1123
MwoI GCNNNNNNNGC 3 cut(s) 241, 364, 420
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 3 cut(s) 102, 103, 797
NdeII GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 6 cut(s) 292, 454, 648, 1030, 1049, 1105
NlaIV GGNNCC 5 cut(s) 99, 100, 402, 661, 915
NmuCI GTSAC 3 cut(s) 149, 962, 1097
NspI RCATGY 1 cut(s) 1105
PciI ACATGT 1 cut(s) 1101
PctI GAATGC 1 cut(s) 1022
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 454, 929
Pfl23II CGTACG 1 cut(s) 72
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 2 cut(s) 206, 530
PpsI GAGTC 2 cut(s) 206, 530
PpuMI RGGWCCY 1 cut(s) 98
PscI ACATGT 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 1092
PspGI CCWGG 1 cut(s) 1092
PspLI CGTACG 1 cut(s) 72
PspN4I GGNNCC 5 cut(s) 99, 100, 402, 661, 915
PspPI GGNCC 2 cut(s) 98, 234
PspPPI RGGWCCY 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 938
PsuI RGATCY 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 5 cut(s) 74, 130, 157, 532, 915
RsaNI GTAC 5 cut(s) 73, 129, 156, 531, 914
SaqAI TTAA 1 cut(s) 1116
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 8 cut(s) 109, 388, 486, 589, 666, 823, 1003, 1140
Sau96I GGNCC 2 cut(s) 98, 234
SchI GAGTC 2 cut(s) 207, 530
ScrFI CCNGG 4 cut(s) 102, 103, 797, 1094
SduI GDGCHC 2 cut(s) 662, 1167
SfaNI GCATC 3 cut(s) 352, 354, 367
SinI GGWCC 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 7 cut(s) 60, 695, 876, 985, 1060, 1088, 1112
SsiI CCGC 5 cut(s) 38, 330, 445, 458, 600
SspMI CTAG 5 cut(s) 411, 429, 741, 881, 944
StyD4I CCNGG 4 cut(s) 100, 101, 795, 1092
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 4 cut(s) 155, 182, 509, 1012
TaiI ACGT 3 cut(s) 151, 720, 816
TaqI TCGA 3 cut(s) 135, 539, 612
TaqII GACCGA 1 cut(s) 401
TasI AATT 7 cut(s) 60, 695, 876, 985, 1060, 1088, 1112
TatI WGTACW 1 cut(s) 128
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 454, 929
Tru1I TTAA 1 cut(s) 1116
Tru9I TTAA 1 cut(s) 1116
TseFI GTSAC 3 cut(s) 149, 962, 1097
Tsp45I GTSAC 3 cut(s) 149, 962, 1097
TspDTI ATGAA 7 cut(s) 406, 630, 908, 921, 969, 1015, 1034
TspGWI ACGGA 1 cut(s) 103
TspMI CCCGGG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 4 cut(s) 695, 876, 1088, 1112
XceI RCATGY 1 cut(s) 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 615
XmaI CCCGGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 5 cut(s) 411, 429, 741, 881, 944
ZraI GACGTC 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.