Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003948

Physical Location & Seq

Genomic Coordinates Reverse (-)

51897430 .. 51900283

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0415800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTCTCGCTCTCTTTGGGTCGACTGGTTGCGGTTTCACCTATAATAAATCGCTATGGATCGTATAGTTTGCATAGCTACGGCTCCAGATTTAACCAGAAATCAAGCTTCAGATTGCGATCGATGGCGTCCGAGTCTGACCCTTCTTCTTTTGCTCAATCTGTGGATTCTGATTCAGCTGAAACAAACCCTGCTGGATTCTGTATTATAGAGGGGCCGGAAACAGTGCAAGACTTTGCCAAAATGGAACTGCAAGAGATTCAGGATAATATTCGGAGTCGTCGCAACAAAATTTTCTTGCATATGGAAGAGGTTCGCAGGCTGAGGATACAACAGAGGATTAAAAACGCAGAGCTCGGAATGTCAAGTGAAGAGCAAGAAAATGAACTTCCGAACTTTCCATCATTCATTCCATTCTTGCCTCCCTTGACTTCAGCAAACCTTAAGCAGTATTATGCTGTTTGTTTTTCTCTTATTGCGGGAATCATCCTTTTCGGTGGCCTCCTAGCACCCACTTTAGAGTTGAGGCTGGGAATAGGAGGCACATCGTATGAAGACTTCATAAGTAGTATGCATCTGCCTATGCAGTTGAGTGAAGTTGATCCCATAGTTGCATCCTTCTCGGGAGGAGCAGTTGGAGTGATCTCTTCACTGATGGTAGTTGAAATAAACAATGTAAAACTGCAGGAGGATAAGAGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGGTGTTCAAGCACAGGAACCCTCATGCTTGCTGAAGCAGTATCAACCATTGATGGTGGAGAACAGCCTTTATCACTACCGAAAACCGAAAGATGTTCAAACTGCTCAGGATCCGGAAAGGTTATGTGCCCTACATGCCTTTGCACTGGGATGGCCATGGCAAGCGAGCACGACCCTCGAATCGATCCCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.0

Weight (kDa)

5.28

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36820 FvH4_5g06100 FvH4_5g34640 FvH4_5g34640 FvH4_5g34640 FvH4_6g28541 FvH4_6g28610 FvH4_6g50450
rosa_chinensis	RchiOBHm_Chr1g0379901 RchiOBHm_Chr1g0379941
rosa_laevigata	RLG00000026347
rosa_multiflora	Rmu_co8345317.1_g000001 Rmu_sc0004184.1_g000019 Rmu_sc0004184.1_g000023 Rmu_sc0035510.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279840 Rroxscaffold_4G00279850
rosa_rugosa	Rorug01G0410600 Rorug01G0415700 Rorug01G0415800
rosa_samantha	Rh1AG432900 Rh1AG433100 Rh1AG433300 Rh1AG440000 Rh1AG440300 Rh1BG391100 Rh1BG395900 Rh1BG396100 Rh1CG403800 Rh1CG409200 Rh1DG422200 Rh1DG426900 Rh7DG344800
rosa_wichuraiana	Rw1G038280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	851
AciI	CCGC	2 cut(s)	32, 479
AclWI	GGATC	5 cut(s)	67, 596, 843, 856, 917
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	3 cut(s)	94, 417, 792
AcyI	GRCGYC	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	665, 747, 837
AluBI	AGCT	4 cut(s)	78, 108, 179, 355
AluI	AGCT	4 cut(s)	78, 108, 179, 355
Alw21I	GWGCWC	3 cut(s)	357, 739, 909
AlwI	GGATC	5 cut(s)	67, 596, 843, 856, 917
Ama87I	CYCGRG	1 cut(s)	622
Aor13HI	TCCGGA	1 cut(s)	851
AoxI	GGCC	3 cut(s)	215, 499, 891
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	869
BalI	TGGCCA	1 cut(s)	893
BamHI	GGATCC	1 cut(s)	848
BanII	GRGCYC	1 cut(s)	357
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	3 cut(s)	357, 739, 909
BbvCI	CCTCAGC	1 cut(s)	323
BccI	CCATC	5 cut(s)	118, 409, 649, 785, 883
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	4 cut(s)	603, 637, 896, 930
BciVI	GTATCC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	683
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	4 cut(s)	85, 216, 757, 850
BmrI	ACTGGG	1 cut(s)	894
BmsI	GCATC	3 cut(s)	583, 623, 689
BmuI	ACTGGG	1 cut(s)	894
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	323, 844
Bsa29I	ATCGAT	2 cut(s)	122, 921
BsaBI	GATNNNNATC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	894
BsaWI	WCCGGW	1 cut(s)	851
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bse1I	ACTGG	3 cut(s)	30, 724, 889
Bse8I	GATNNNNATC	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	851
BseCI	ATCGAT	2 cut(s)	122, 921
BseDI	CCNNGG	1 cut(s)	894
BseGI	GGATG	3 cut(s)	486, 614, 894
BseJI	GATNNNNATC	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	314, 858
BseNI	ACTGG	3 cut(s)	30, 724, 889
BseRI	GAGGAG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	869
BseYI	CCCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	217, 501, 893
BshVI	ATCGAT	2 cut(s)	122, 921
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	3 cut(s)	357, 739, 909
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	218, 852
BsnI	GGCC	3 cut(s)	217, 501, 893
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	4 cut(s)	357, 739, 869, 909
Bsp13I	TCCGGA	1 cut(s)	851
Bsp143I	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	2 cut(s)	32, 479
BspANI	GGCC	3 cut(s)	217, 501, 893
BspCNI	CTCAG	2 cut(s)	315, 857
BspDI	ATCGAT	2 cut(s)	122, 921
BspEI	TCCGGA	1 cut(s)	851
BspLI	GGNNCC	4 cut(s)	85, 216, 757, 850
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	5 cut(s)	67, 596, 843, 856, 917
BspQI	GCTCTTC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	30, 724, 889
BssECI	CCNNGG	1 cut(s)	894
BssMI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	894
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	3 cut(s)	303, 366, 652
BstACI	GRCGYC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	320, 768, 901, 905
BstDEI	CTNAG	2 cut(s)	323, 844
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	3 cut(s)	486, 614, 894
BstKTI	GATC	6 cut(s)	62, 122, 604, 645, 851, 925
BstMBI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	873
BstNSI	RCATGY	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	869
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	848
BstYI	RGATCY	1 cut(s)	848
Bsu15I	ATCGAT	2 cut(s)	122, 921
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	217, 501, 893
BsuTUI	ATCGAT	2 cut(s)	122, 921
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	3 cut(s)	486, 614, 894
BtsIMutI	CAGTG	3 cut(s)	231, 650, 882
Cac8I	GCNNGC	4 cut(s)	320, 768, 901, 905
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	2 cut(s)	122, 921
CseI	GACGC	1 cut(s)	117
CviAII	CATG	3 cut(s)	763, 873, 895
DdeI	CTNAG	2 cut(s)	323, 844
DpnI	GATC	6 cut(s)	61, 121, 603, 644, 850, 924
DpnII	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	3 cut(s)	303, 366, 652
EarI	CTCTTC	3 cut(s)	303, 366, 652
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	894
Eco24I	GRGCYC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	94, 417, 792
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	894
EcoT22I	ATGCAT	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	3 cut(s)	766, 876, 898
FatI	CATG	3 cut(s)	762, 872, 894
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	22
FokI	GGATG	3 cut(s)	473, 601, 901
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	506
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	217, 501, 893
HapII	CCGG	2 cut(s)	218, 852
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	766, 876, 898
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	8 cut(s)	134, 167, 173, 198, 259, 277, 483, 918
HpaII	CCGG	2 cut(s)	218, 852
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	7 cut(s)	113, 133, 139, 172, 276, 359, 393
Hpy188III	TCNNGA	5 cut(s)	87, 263, 624, 846, 852
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	153, 628
HpyCH4III	ACNGT	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	873
HpyF3I	CTNAG	2 cut(s)	323, 844
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	766, 876, 898
Kpn2I	TCCGGA	1 cut(s)	851
Kzo9I	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	89, 629
LweI	GCATC	3 cut(s)	583, 623, 689
MaeI	CTAG	1 cut(s)	506
MalI	GATC	6 cut(s)	61, 121, 603, 644, 850, 924
MboI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
MboII	GAAGA	5 cut(s)	138, 320, 383, 566, 639
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	4 cut(s)	357, 739, 869, 909
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	2 cut(s)	143, 286
MmeI	TCCRAC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	893
Mph1103I	ATGCAT	1 cut(s)	576
MroI	TCCGGA	1 cut(s)	851
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	4 cut(s)	93, 342, 444, 934
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	2 cut(s)	218, 852
MwoI	GCNNNNNNNGC	1 cut(s)	873
NcoI	CCATGG	1 cut(s)	894
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
NlaIII	CATG	3 cut(s)	766, 876, 898
NlaIV	GGNNCC	4 cut(s)	85, 216, 757, 850
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	6 cut(s)	167, 173, 198, 259, 483, 918
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	2 cut(s)	142, 285
PpsI	GAGTC	2 cut(s)	142, 285
Psp124BI	GAGCTC	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	529
PspN4I	GGNNCC	4 cut(s)	85, 216, 757, 850
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	848
PvuI	CGATCG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	887
SacI	GAGCTC	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	93, 342, 444, 934
Sau3AI	GATC	6 cut(s)	59, 119, 601, 642, 848, 922
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	143, 286
SduI	GDGCHC	4 cut(s)	357, 739, 869, 909
SetI	ASST	8 cut(s)	43, 80, 110, 181, 315, 357, 444, 861
SfaNI	GCATC	3 cut(s)	583, 623, 689
SfcI	CTRYAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	2 cut(s)	32, 479
SspI	AATATT	2 cut(s)	271, 707
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	4 cut(s)	22, 122, 916, 921
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	6 cut(s)	167, 173, 198, 259, 483, 918
Tru1I	TTAA	4 cut(s)	93, 342, 444, 934
Tru9I	TTAA	4 cut(s)	93, 342, 444, 934
TscAI	CASTG	3 cut(s)	231, 657, 889
TspDTI	ATGAA	4 cut(s)	397, 399, 550, 567
TspRI	CASTG	3 cut(s)	231, 657, 889
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	876
XmiI	GTMKAC	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.